RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 LINC00575Q6W349 94 aa1.83□□□□□ -2.12
CCDC54-201ENST00000261058 RPS27P42677 84 aaKnown RBP1.82□□□□□ -2.12
CCDC54-201ENST00000261058 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.82□□□□□ -2.12
CCDC54-201ENST00000261058 ICE1Q9Y2F5 2266 aa1.82□□□□□ -2.12
CCDC54-201ENST00000261058 MED13LQ71F56 2210 aa1.82□□□□□ -2.12
CCDC54-201ENST00000261058 BAHCC1Q9P281 2608 aa1.81□□□□□ -2.12
CCDC54-201ENST00000261058 PRCDQ00LT1 54 aa1.81□□□□□ -2.12
CCDC54-201ENST00000261058 PRB3Q04118 309 aaPredicted RBP1.81□□□□□ -2.12
CCDC54-201ENST00000261058 PIGYQ3MUY2 71 aa1.81□□□□□ -2.12
CCDC54-201ENST00000261058 Q6ZRN7 208 aaPredicted RBP1.81□□□□□ -2.12
CCDC54-201ENST00000261058 Q6ZRX8 168 aa1.81□□□□□ -2.12
CCDC54-201ENST00000261058 PLAC4Q8WY50 150 aa1.81□□□□□ -2.12
CCDC54-201ENST00000261058 CCL22O00626 93 aa1.8□□□□□ -2.12
CCDC54-201ENST00000261058 RPL39P62891 51 aaKnown RBP1.8□□□□□ -2.12
CCDC54-201ENST00000261058 SPINK9Q5DT21 86 aa1.8□□□□□ -2.12
CCDC54-201ENST00000261058 TP53AIP1Q9HCN2 124 aa1.8□□□□□ -2.12
CCDC54-201ENST00000261058 LYNX1G3V0Z9 82 aa1.79□□□□□ -2.12
CCDC54-201ENST00000261058 G3V318 75 aa1.79□□□□□ -2.12
CCDC54-201ENST00000261058 RPL39LQ96EH5 51 aaKnown RBP1.79□□□□□ -2.12
CCDC54-201ENST00000261058 F5P12259 2224 aa1.79□□□□□ -2.12
CCDC54-201ENST00000261058 CACNA1CQ13936 2221 aa1.78□□□□□ -2.12
CCDC54-201ENST00000261058 DEFB106AQ8N104 65 aa1.78□□□□□ -2.12
CCDC54-201ENST00000261058 PRO3102Q9H379 93 aa1.78□□□□□ -2.12
CCDC54-201ENST00000261058 A0A096LNT2 108 aa1.77□□□□□ -2.13
CCDC54-201ENST00000261058 GVQW2A0A096LPI5 108 aaPredicted RBP1.77□□□□□ -2.13
CCDC54-201ENST00000261058 C10orf99Q6UWK7 81 aa1.77□□□□□ -2.13
CCDC54-201ENST00000261058 CRIPTQ9P021 101 aa1.76□□□□□ -2.13
CCDC54-201ENST00000261058 CADP27708 2225 aa1.76□□□□□ -2.13
CCDC54-201ENST00000261058 MINOS1Q5TGZ0 78 aa1.75□□□□□ -2.13
CCDC54-201ENST00000261058 SORL1Q92673 2214 aa1.75□□□□□ -2.13
CCDC54-201ENST00000261058 ANKRD17O75179 2603 aaKnown RBP1.75□□□□□ -2.13
CCDC54-201ENST00000261058 PDE4DIPQ5VU43 2346 aa1.75□□□□□ -2.13
CCDC54-201ENST00000261058 TECTAO75443 2155 aa1.75□□□□□ -2.13
CCDC54-201ENST00000261058 IGLV5-48A0A075B6I7 105 aa1.74□□□□□ -2.13
CCDC54-201ENST00000261058 I3L2K1 104 aa1.74□□□□□ -2.13
CCDC54-201ENST00000261058 K7EQZ3 153 aa1.74□□□□□ -2.13
CCDC54-201ENST00000261058 COX6B2Q6YFQ2 88 aa1.74□□□□□ -2.13
CCDC54-201ENST00000261058 C6orf48Q9UBA6 75 aa1.74□□□□□ -2.13
CCDC54-201ENST00000261058 LEAP2Q969E1 77 aa1.74□□□□□ -2.13
CCDC54-201ENST00000261058 KNTC1P50748 2209 aa1.73□□□□□ -2.13
CCDC54-201ENST00000261058 PCOTHQ58A44 107 aa1.73□□□□□ -2.13
CCDC54-201ENST00000261058 UNQ6190/PRO20217Q6UXQ8 127 aa1.73□□□□□ -2.13
CCDC54-201ENST00000261058 URB1O60287 2271 aaKnown RBP1.72□□□□□ -2.13
CCDC54-201ENST00000261058 M0QY20 66 aa1.72□□□□□ -2.13
CCDC54-201ENST00000261058 SPINK13Q1W4C9 94 aa1.72□□□□□ -2.13
CCDC54-201ENST00000261058 BPTFQ12830 3046 aa1.72□□□□□ -2.13
CCDC54-201ENST00000261058 WFDC10BQ8IUB3 73 aa1.71□□□□□ -2.14
CCDC54-201ENST00000261058 WFDC13Q8IUB5 93 aa1.71□□□□□ -2.14
CCDC54-201ENST00000261058 USMG5Q96IX5 58 aa1.71□□□□□ -2.14
CCDC54-201ENST00000261058 MRPL34Q9BQ48 92 aaKnown RBP1.71□□□□□ -2.14
CCDC54-201ENST00000261058 ABCA1O95477 2261 aa1.7□□□□□ -2.14
CCDC54-201ENST00000261058 UBE2DNLQ8IWF7 75 aa1.7□□□□□ -2.14
CCDC54-201ENST00000261058 TMEM167AQ8TBQ9 72 aa1.7□□□□□ -2.14
CCDC54-201ENST00000261058 COX6A2Q02221 97 aa1.69□□□□□ -2.14
CCDC54-201ENST00000261058 KRTAP21-2Q3LI59 83 aa1.69□□□□□ -2.14
CCDC54-201ENST00000261058 KRTAP13-4Q3LI77 160 aa1.69□□□□□ -2.14
CCDC54-201ENST00000261058 PTPRQQ9UMZ3 2332 aa1.68□□□□□ -2.14
CCDC54-201ENST00000261058 KRTAP12-1P59990 96 aa1.68□□□□□ -2.14
CCDC54-201ENST00000261058 AHCTF1Q8WYP5 2266 aa1.67□□□□□ -2.14
CCDC54-201ENST00000261058 H0YAA0 97 aa1.67□□□□□ -2.14
CCDC54-201ENST00000261058 J3QKU1 62 aa1.67□□□□□ -2.14
CCDC54-201ENST00000261058 DEFB131AP59861 70 aa1.67□□□□□ -2.14
CCDC54-201ENST00000261058 RPL37P61927 97 aaKnown RBP1.67□□□□□ -2.14
CCDC54-201ENST00000261058 WT1-ASQ06250 92 aa1.67□□□□□ -2.14
CCDC54-201ENST00000261058 K7EIM0 57 aa1.66□□□□□ -2.14
CCDC54-201ENST00000261058 OTOGLQ3ZCN5 2332 aa1.66□□□□□ -2.14
CCDC54-201ENST00000261058 ASCC3Q8N3C0 2202 aaKnown RBP1.66□□□□□ -2.14
CCDC54-201ENST00000261058 ASXL3Q9C0F0 2248 aa1.66□□□□□ -2.14
CCDC54-201ENST00000261058 CNOT1A5YKK6 2376 aaKnown RBP1.66□□□□□ -2.14
CCDC54-201ENST00000261058 DEFB103AP81534 67 aa1.66□□□□□ -2.14
CCDC54-201ENST00000261058 RPL39P5Q59GN2 51 aa1.66□□□□□ -2.14
CCDC54-201ENST00000261058 Q6ZSA8 131 aa1.66□□□□□ -2.14
CCDC54-201ENST00000261058 MUC6Q6W4X9 2439 aa1.65□□□□□ -2.15
CCDC54-201ENST00000261058 DEFB123Q8N688 67 aa1.65□□□□□ -2.15
CCDC54-201ENST00000261058 KAAG1Q9UBP8 84 aa1.65□□□□□ -2.15
CCDC54-201ENST00000261058 CACNA1EQ15878 2313 aa1.64□□□□□ -2.15
CCDC54-201ENST00000261058 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.64□□□□□ -2.15
CCDC54-201ENST00000261058 KNL1Q8NG31 2342 aa1.64□□□□□ -2.15
CCDC54-201ENST00000261058 LYNX1P0DP58 116 aa1.64□□□□□ -2.15
CCDC54-201ENST00000261058 TOMM7Q9P0U1 55 aa1.64□□□□□ -2.15
CCDC54-201ENST00000261058 USF3Q68DE3 2245 aa1.64□□□□□ -2.15
CCDC54-201ENST00000261058 MMP24-AS1A0A0U1RRL7 71 aa1.63□□□□□ -2.15
CCDC54-201ENST00000261058 DEFB108AA8MXU0 73 aa1.63□□□□□ -2.15
CCDC54-201ENST00000261058 H1FX-AS1Q4G0G2 97 aa1.63□□□□□ -2.15
CCDC54-201ENST00000261058 DOPEY2Q9Y3R5 2298 aa1.62□□□□□ -2.15
CCDC54-201ENST00000261058 DEFB130BP0DP73 79 aa1.61□□□□□ -2.15
CCDC54-201ENST00000261058 DEFB130AP0DP74 79 aa1.61□□□□□ -2.15
CCDC54-201ENST00000261058 DEFB104AQ8WTQ1 72 aa1.6□□□□□ -2.15
CCDC54-201ENST00000261058 C10orf95Q9H7T3 257 aa1.6□□□□□ -2.15
CCDC54-201ENST00000261058 ALMS1Q8TCU4 4167 aa1.6□□□□□ -2.15
CCDC54-201ENST00000261058 PLCE1Q9P212 2302 aa1.59□□□□□ -2.15
CCDC54-201ENST00000261058 A8MTW9 85 aa1.59□□□□□ -2.15
CCDC54-201ENST00000261058 H3BUA1 57 aa1.59□□□□□ -2.15
CCDC54-201ENST00000261058 DEFB109BQ30KR1 87 aa1.59□□□□□ -2.15
CCDC54-201ENST00000261058 CACNA1BQ00975 2339 aa1.59□□□□□ -2.15
CCDC54-201ENST00000261058 CNTRLQ7Z7A1 2325 aa1.58□□□□□ -2.16
CCDC54-201ENST00000261058 CLPSL2Q6UWE3 100 aa1.57□□□□□ -2.16
CCDC54-201ENST00000261058 COL6A6A6NMZ7 2263 aa1.57□□□□□ -2.16
CCDC54-201ENST00000261058 LELP1Q5T871 98 aa1.57□□□□□ -2.16
CCDC54-201ENST00000261058 K7EIL1 84 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms