RNA–Protein interactions for RNA: ENST00000642072.1

LINC00339-212, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-212ENST00000642072 VCX2Q9H322 139 aa4.88□□□□□ -1.63
LINC00339-212ENST00000642072 CYSLTR1Q9Y271 337 aa4.88□□□□□ -1.63
LINC00339-212ENST00000642072 IGKV2D-26A0A0A0MRZ7 120 aa4.87□□□□□ -1.63
LINC00339-212ENST00000642072 SMIM1B2RUZ4 78 aa4.87□□□□□ -1.63
LINC00339-212ENST00000642072 CXCL5P42830 114 aa4.87□□□□□ -1.63
LINC00339-212ENST00000642072 UBE2AP49459 152 aa4.87□□□□□ -1.63
LINC00339-212ENST00000642072 LINC01547P58512 204 aaPredicted RBP4.87□□□□□ -1.63
LINC00339-212ENST00000642072 HERVK_113P63121 156 aa4.87□□□□□ -1.63
LINC00339-212ENST00000642072 LAMTOR2Q9Y2Q5 125 aa4.87□□□□□ -1.63
LINC00339-212ENST00000642072 LOC389332A0A1B0GUA5 103 aa4.86□□□□□ -1.63
LINC00339-212ENST00000642072 LINC00310P59036 64 aa4.86□□□□□ -1.63
LINC00339-212ENST00000642072 PRLHP81277 87 aa4.86□□□□□ -1.63
LINC00339-212ENST00000642072 LCE2CQ5TA81 110 aa4.86□□□□□ -1.63
LINC00339-212ENST00000642072 FP248Q71RG6 208 aaPredicted RBP4.86□□□□□ -1.63
LINC00339-212ENST00000642072 C3orf22Q8N5N4 141 aa4.86□□□□□ -1.63
LINC00339-212ENST00000642072 Q8N8P6 123 aa4.86□□□□□ -1.63
LINC00339-212ENST00000642072 IGKV2-28A0A075B6P5 120 aa4.85□□□□□ -1.63
LINC00339-212ENST00000642072 IGLV5-45A0A087WSX0 123 aa4.85□□□□□ -1.63
LINC00339-212ENST00000642072 SERF1AO75920 110 aa4.85□□□□□ -1.63
LINC00339-212ENST00000642072 IGKV2D-28P01615 120 aa4.85□□□□□ -1.63
LINC00339-212ENST00000642072 SEC11AP67812 179 aa4.85□□□□□ -1.63
LINC00339-212ENST00000642072 BAGE3Q86Y29 109 aa4.85□□□□□ -1.63
LINC00339-212ENST00000642072 PLEKHB2Q96CS7 222 aa4.85□□□□□ -1.63
LINC00339-212ENST00000642072 MAP1LC3AQ9H492 121 aa4.85□□□□□ -1.63
LINC00339-212ENST00000642072 TMEM238C9JI98 176 aa4.84□□□□□ -1.63
LINC00339-212ENST00000642072 K7EMI3 77 aa4.84□□□□□ -1.63
LINC00339-212ENST00000642072 ORMDL2Q53FV1 153 aa4.84□□□□□ -1.63
LINC00339-212ENST00000642072 NKAPP1Q8N9T2 125 aa4.84□□□□□ -1.63
LINC00339-212ENST00000642072 COX7B2Q8TF08 81 aa4.84□□□□□ -1.63
LINC00339-212ENST00000642072 TIMM17AQ99595 171 aa4.84□□□□□ -1.63
LINC00339-212ENST00000642072 TMEM126AQ9H061 195 aa4.84□□□□□ -1.63
LINC00339-212ENST00000642072 M0R378 163 aa4.83□□□□□ -1.64
LINC00339-212ENST00000642072 SCGB1D1O95968 90 aa4.83□□□□□ -1.64
LINC00339-212ENST00000642072 VPREB1P12018 145 aa4.83□□□□□ -1.64
LINC00339-212ENST00000642072 SPAG11AQ6PDA7 123 aa4.83□□□□□ -1.64
LINC00339-212ENST00000642072 Q8NDZ9 215 aa4.83□□□□□ -1.64
LINC00339-212ENST00000642072 PRO1933Q9H354 126 aa4.83□□□□□ -1.64
LINC00339-212ENST00000642072 GEMIN7Q9H840 131 aaKnown RBP4.83□□□□□ -1.64
LINC00339-212ENST00000642072 C20orf202A1L168 122 aa4.82□□□□□ -1.64
LINC00339-212ENST00000642072 KRTAP19-2Q3LHN2 52 aa4.82□□□□□ -1.64
LINC00339-212ENST00000642072 PAPPA-AS1Q5QFB9 102 aa4.82□□□□□ -1.64
LINC00339-212ENST00000642072 FAM19A1Q7Z5A9 133 aa4.82□□□□□ -1.64
LINC00339-212ENST00000642072 C18orf32Q8TCD1 76 aa4.82□□□□□ -1.64
LINC00339-212ENST00000642072 TOMM6Q96B49 74 aa4.82□□□□□ -1.64
LINC00339-212ENST00000642072 MIEN1Q9BRT3 115 aa4.82□□□□□ -1.64
LINC00339-212ENST00000642072 TINCRA0A1B0GVN0 87 aa4.81□□□□□ -1.64
LINC00339-212ENST00000642072 PMCHL1Q16048 86 aa4.81□□□□□ -1.64
LINC00339-212ENST00000642072 LINC00337Q8N6G1 96 aa4.81□□□□□ -1.64
LINC00339-212ENST00000642072 CHCHD1Q96BP2 118 aaKnown RBP4.81□□□□□ -1.64
LINC00339-212ENST00000642072 SPRR4Q96PI1 79 aa4.81□□□□□ -1.64
LINC00339-212ENST00000642072 VAMP8Q9BV40 100 aa4.81□□□□□ -1.64
LINC00339-212ENST00000642072 M0R143 59 aa4.8□□□□□ -1.64
LINC00339-212ENST00000642072 SEC61BP60468 96 aaKnown RBP4.8□□□□□ -1.64
LINC00339-212ENST00000642072 KIAA1644Q3SXP7 199 aa4.8□□□□□ -1.64
LINC00339-212ENST00000642072 ERASQ7Z444 233 aa4.8□□□□□ -1.64
LINC00339-212ENST00000642072 NXT2Q9NPJ8 142 aaKnown RBP4.8□□□□□ -1.64
LINC00339-212ENST00000642072 HSBP1O75506 76 aa4.79□□□□□ -1.64
LINC00339-212ENST00000642072 SPINK8P0C7L1 97 aa4.79□□□□□ -1.64
LINC00339-212ENST00000642072 C3orf79P0CE67 100 aa4.79□□□□□ -1.64
LINC00339-212ENST00000642072 Q8NBF4 154 aa4.79□□□□□ -1.64
LINC00339-212ENST00000642072 SNHG12Q9BXW3 62 aa4.79□□□□□ -1.64
LINC00339-212ENST00000642072 SND1-IT1Q9HBX3 110 aa4.79□□□□□ -1.64
LINC00339-212ENST00000642072 IGLV5-39A0A0G2JS06 123 aa4.78□□□□□ -1.64
LINC00339-212ENST00000642072 ATP5LO75964 103 aa4.78□□□□□ -1.64
LINC00339-212ENST00000642072 KRTDAPP60985 99 aa4.78□□□□□ -1.64
LINC00339-212ENST00000642072 MT1HP80294 61 aa4.78□□□□□ -1.64
LINC00339-212ENST00000642072 XP32Q5T750 250 aa4.78□□□□□ -1.64
LINC00339-212ENST00000642072 DAND5Q8N907 189 aa4.78□□□□□ -1.64
LINC00339-212ENST00000642072 HIGD2AQ9BW72 106 aa4.78□□□□□ -1.64
LINC00339-212ENST00000642072 CST9LQ9H4G1 147 aa4.78□□□□□ -1.64
LINC00339-212ENST00000642072 UQCR10Q9UDW1 63 aa4.78□□□□□ -1.64
LINC00339-212ENST00000642072 A0A1B0GV90 55 aa4.77□□□□□ -1.65
LINC00339-212ENST00000642072 LINC01546A6NGU7 62 aa4.77□□□□□ -1.65
LINC00339-212ENST00000642072 LINC00614P0C842 121 aa4.77□□□□□ -1.65
LINC00339-212ENST00000642072 G0S2P27469 103 aa4.77□□□□□ -1.65
LINC00339-212ENST00000642072 PFN2P35080 140 aa4.77□□□□□ -1.65
LINC00339-212ENST00000642072 SCGB3A1Q96QR1 104 aa4.77□□□□□ -1.65
LINC00339-212ENST00000642072 ERG28Q9UKR5 140 aa4.77□□□□□ -1.65
LINC00339-212ENST00000642072 SPINK1P00995 79 aa4.76□□□□□ -1.65
LINC00339-212ENST00000642072 IGLC3P0DOY3 106 aa4.76□□□□□ -1.65
LINC00339-212ENST00000642072 RPL24P83731 157 aaKnown RBP4.76□□□□□ -1.65
LINC00339-212ENST00000642072 SPATA45Q537H7 98 aa4.76□□□□□ -1.65
LINC00339-212ENST00000642072 URB1-AS1Q96HZ7 61 aa4.76□□□□□ -1.65
LINC00339-212ENST00000642072 PAM16Q9Y3D7 125 aa4.76□□□□□ -1.65
LINC00339-212ENST00000642072 LORP23490 312 aaPredicted RBP4.75□□□□□ -1.65
LINC00339-212ENST00000642072 COX17Q14061 63 aa4.75□□□□□ -1.65
LINC00339-212ENST00000642072 LINC00483Q53H64 154 aa4.75□□□□□ -1.65
LINC00339-212ENST00000642072 C4orf48Q5BLP8 95 aa4.75□□□□□ -1.65
LINC00339-212ENST00000642072 PET117Q6UWS5 81 aa4.75□□□□□ -1.65
LINC00339-212ENST00000642072 Q8N377 158 aa4.75□□□□□ -1.65
LINC00339-212ENST00000642072 FAM19A2Q8N3H0 131 aa4.75□□□□□ -1.65
LINC00339-212ENST00000642072 HSPB8Q9UJY1 196 aa4.75□□□□□ -1.65
LINC00339-212ENST00000642072 KRTAP4-16G5E9R7 235 aaPredicted RBP4.74□□□□□ -1.65
LINC00339-212ENST00000642072 SYS1-DBNDD2H3BUS1 97 aa4.74□□□□□ -1.65
LINC00339-212ENST00000642072 LEPROTL1O95214 131 aa4.74□□□□□ -1.65
LINC00339-212ENST00000642072 SPRR1AP35321 89 aa4.74□□□□□ -1.65
LINC00339-212ENST00000642072 RPS29P62273 56 aaKnown RBP4.74□□□□□ -1.65
LINC00339-212ENST00000642072 PMVKQ15126 192 aa4.74□□□□□ -1.65
LINC00339-212ENST00000642072 COL5A1-AS1Q5SY13 56 aa4.74□□□□□ -1.65
LINC00339-212ENST00000642072 ZNF706Q9Y5V0 76 aaPredicted RBP4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms