RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 TRAV13-2A0A0B4J235 113 aa10.06□□□□□ -0.8
SHROOM1-208ENST00000617339 TRBV6-4A0A1B0GX49 114 aa10.06□□□□□ -0.8
SHROOM1-208ENST00000617339 IGLV5-45A0A087WSX0 123 aa10.05□□□□□ -0.8
SHROOM1-208ENST00000617339 NANOS2P60321 138 aaKnown RBP10.05□□□□□ -0.8
SHROOM1-208ENST00000617339 IL17DQ8TAD2 202 aa10.05□□□□□ -0.8
SHROOM1-208ENST00000617339 IGKV2-28A0A075B6P5 120 aa10.04□□□□□ -0.8
SHROOM1-208ENST00000617339 CYSRT1A8MQ03 144 aa10.04□□□□□ -0.8
SHROOM1-208ENST00000617339 IGKV2D-28P01615 120 aa10.04□□□□□ -0.8
SHROOM1-208ENST00000617339 TMEM258P61165 79 aa10.03□□□□□ -0.8
SHROOM1-208ENST00000617339 RPL28P46779 137 aaKnown RBP10.03□□□□□ -0.8
SHROOM1-208ENST00000617339 A0A0J9YWU9 116 aa10.02□□□□□ -0.8
SHROOM1-208ENST00000617339 GHRHP01286 108 aa10.02□□□□□ -0.8
SHROOM1-208ENST00000617339 UBE2DNLQ8IWF7 75 aa10.02□□□□□ -0.8
SHROOM1-208ENST00000617339 IGKV2D-24A0A075B6R9 120 aa10.02□□□□□ -0.81
SHROOM1-208ENST00000617339 OVOL2Q9BRP0 275 aa10.02□□□□□ -0.81
SHROOM1-208ENST00000617339 FAM19A1Q7Z5A9 133 aa10.02□□□□□ -0.81
SHROOM1-208ENST00000617339 C11orf45Q8TAV5 145 aa10.02□□□□□ -0.81
SHROOM1-208ENST00000617339 Q6JHZ5 121 aa10.01□□□□□ -0.81
SHROOM1-208ENST00000617339 PRR3P79522 188 aaKnown RBP10.01□□□□□ -0.81
SHROOM1-208ENST00000617339 C9orf116Q5BN46 136 aaPredicted RBP10.01□□□□□ -0.81
SHROOM1-208ENST00000617339 Q6ZTC4 211 aa10.01□□□□□ -0.81
SHROOM1-208ENST00000617339 CCL18P55774 89 aa10□□□□□ -0.81
SHROOM1-208ENST00000617339 RPS28P62857 69 aaKnown RBP10□□□□□ -0.81
SHROOM1-208ENST00000617339 COX7B2Q8TF08 81 aa10□□□□□ -0.81
SHROOM1-208ENST00000617339 ENHOQ6UWT2 76 aa10□□□□□ -0.81
SHROOM1-208ENST00000617339 BRK1Q8WUW1 75 aa10□□□□□ -0.81
SHROOM1-208ENST00000617339 DEFB131BA0A096LNP1 70 aa10□□□□□ -0.81
SHROOM1-208ENST00000617339 UPK3BQ9BT76 320 aa10□□□□□ -0.81
SHROOM1-208ENST00000617339 RBM3P98179 157 aaKnown RBP9.99□□□□□ -0.81
SHROOM1-208ENST00000617339 TENM2Q9NT68 2774 aa9.99□□□□□ -0.81
SHROOM1-208ENST00000617339 STAB2Q8WWQ8 2551 aa9.98□□□□□ -0.81
SHROOM1-208ENST00000617339 LINC00959A0A1B0GUT2 108 aa9.98□□□□□ -0.81
SHROOM1-208ENST00000617339 MIFP14174 115 aa9.98□□□□□ -0.81
SHROOM1-208ENST00000617339 S100A7L2Q5SY68 101 aa9.98□□□□□ -0.81
SHROOM1-208ENST00000617339 LYRM9A8MSI8 78 aa9.97□□□□□ -0.81
SHROOM1-208ENST00000617339 HIGD2BQ4VC39 106 aa9.97□□□□□ -0.81
SHROOM1-208ENST00000617339 HAMPP81172 84 aa9.97□□□□□ -0.81
SHROOM1-208ENST00000617339 KPRPQ5T749 579 aaPredicted RBP9.96□□□□□ -0.81
SHROOM1-208ENST00000617339 ORMDL1Q9P0S3 153 aa9.96□□□□□ -0.82
SHROOM1-208ENST00000617339 ZNF561-AS1K7EIQ3 104 aa9.95□□□□□ -0.82
SHROOM1-208ENST00000617339 REG3AQ06141 175 aa9.95□□□□□ -0.82
SHROOM1-208ENST00000617339 H0YGX0 51 aa9.95□□□□□ -0.82
SHROOM1-208ENST00000617339 Q5XG85 94 aa9.94□□□□□ -0.82
SHROOM1-208ENST00000617339 C6orf223Q8N319 242 aa9.94□□□□□ -0.82
SHROOM1-208ENST00000617339 KRTAP10-11P60412 298 aa9.93□□□□□ -0.82
SHROOM1-208ENST00000617339 SNURFQ9Y675 71 aa9.93□□□□□ -0.82
SHROOM1-208ENST00000617339 IGHV3OR16-9A0A0B4J2B5 98 aa9.93□□□□□ -0.82
SHROOM1-208ENST00000617339 CHCHD10Q8WYQ3 142 aaPredicted RBP9.93□□□□□ -0.82
SHROOM1-208ENST00000617339 PSCAO43653 123 aa9.92□□□□□ -0.82
SHROOM1-208ENST00000617339 MPLKIPQ8TAP9 179 aa9.92□□□□□ -0.82
SHROOM1-208ENST00000617339 CCKP06307 115 aa9.91□□□□□ -0.82
SHROOM1-208ENST00000617339 FAM236DA0A1B0GTK5 79 aa9.9□□□□□ -0.82
SHROOM1-208ENST00000617339 FAM236CP0DP71 79 aa9.9□□□□□ -0.82
SHROOM1-208ENST00000617339 Q8NAQ8 132 aa9.9□□□□□ -0.82
SHROOM1-208ENST00000617339 SPAG11BQ08648 103 aa9.89□□□□□ -0.83
SHROOM1-208ENST00000617339 LAMTOR3Q9UHA4 124 aa9.88□□□□□ -0.83
SHROOM1-208ENST00000617339 UBL5Q9BZL1 73 aa9.88□□□□□ -0.83
SHROOM1-208ENST00000617339 XAGE1AQ9HD64 81 aa9.88□□□□□ -0.83
SHROOM1-208ENST00000617339 WFDC10BQ8IUB3 73 aa9.87□□□□□ -0.83
SHROOM1-208ENST00000617339 OBSCN-AS1Q96MR7 158 aa9.87□□□□□ -0.83
SHROOM1-208ENST00000617339 A0A087WZ39 114 aa9.86□□□□□ -0.83
SHROOM1-208ENST00000617339 UNQ6190/PRO20217Q6UXQ8 127 aa9.86□□□□□ -0.83
SHROOM1-208ENST00000617339 CAMK2N2Q96S95 79 aa9.86□□□□□ -0.83
SHROOM1-208ENST00000617339 C10orf25Q5T742 122 aa9.85□□□□□ -0.83
SHROOM1-208ENST00000617339 SCXQ7RTU7 201 aa9.85□□□□□ -0.83
SHROOM1-208ENST00000617339 WIPF1O43516 503 aa9.84□□□□□ -0.83
SHROOM1-208ENST00000617339 RMI2Q96E14 147 aa9.84□□□□□ -0.83
SHROOM1-208ENST00000617339 NDUFC2O95298 119 aa9.84□□□□□ -0.83
SHROOM1-208ENST00000617339 IBA57-AS1B1ANH7 110 aa9.83□□□□□ -0.84
SHROOM1-208ENST00000617339 LINC00336Q6ZUF6 198 aa9.83□□□□□ -0.84
SHROOM1-208ENST00000617339 ANK2Q01484 3957 aa9.83□□□□□ -0.84
SHROOM1-208ENST00000617339 FAM19A3Q7Z5A8 133 aa9.83□□□□□ -0.84
SHROOM1-208ENST00000617339 MDFIQ99750 246 aa9.83□□□□□ -0.84
SHROOM1-208ENST00000617339 M0R2N4 97 aa9.82□□□□□ -0.84
SHROOM1-208ENST00000617339 Q8N814 137 aa9.82□□□□□ -0.84
SHROOM1-208ENST00000617339 TRAV10A0A0B4J240 114 aa9.81□□□□□ -0.84
SHROOM1-208ENST00000617339 JMJD7-PLA2G4BH0Y9G9 81 aa9.81□□□□□ -0.84
SHROOM1-208ENST00000617339 CSMD3Q7Z407 3707 aa9.81□□□□□ -0.84
SHROOM1-208ENST00000617339 V9GYY9 64 aa9.81□□□□□ -0.84
SHROOM1-208ENST00000617339 C6orf99Q4VX62 202 aa9.8□□□□□ -0.84
SHROOM1-208ENST00000617339 TMEM256-PLSCR3K7ERE1 68 aa9.8□□□□□ -0.84
SHROOM1-208ENST00000617339 LYPD5Q6UWN5 251 aa9.8□□□□□ -0.84
SHROOM1-208ENST00000617339 LINC00612Q8N6U2 182 aa9.8□□□□□ -0.84
SHROOM1-208ENST00000617339 F8WEM9 126 aa9.79□□□□□ -0.84
SHROOM1-208ENST00000617339 LELP1Q5T871 98 aa9.79□□□□□ -0.84
SHROOM1-208ENST00000617339 CD164L2Q6UWJ8 174 aa9.79□□□□□ -0.84
SHROOM1-208ENST00000617339 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.78□□□□□ -0.84
SHROOM1-208ENST00000617339 H7BZZ5 65 aa9.77□□□□□ -0.84
SHROOM1-208ENST00000617339 C1orf195Q5TG92 126 aa9.77□□□□□ -0.84
SHROOM1-208ENST00000617339 PRO0628Q9UI54 55 aa9.77□□□□□ -0.84
SHROOM1-208ENST00000617339 A0A1B0GUV1 79 aa9.77□□□□□ -0.85
SHROOM1-208ENST00000617339 LINC00474Q9P2X8 69 aa9.77□□□□□ -0.85
SHROOM1-208ENST00000617339 IGKV2-24A0A0C4DH68 120 aa9.76□□□□□ -0.85
SHROOM1-208ENST00000617339 ATP5EP2Q5VTU8 51 aa9.76□□□□□ -0.85
SHROOM1-208ENST00000617339 ESRGQ1W209 222 aa9.76□□□□□ -0.85
SHROOM1-208ENST00000617339 LRCOL1A6NCL2 159 aa9.75□□□□□ -0.85
SHROOM1-208ENST00000617339 SERP1Q9Y6X1 66 aa9.75□□□□□ -0.85
SHROOM1-208ENST00000617339 LINC01547P58512 204 aaPredicted RBP9.74□□□□□ -0.85
SHROOM1-208ENST00000617339 NDUFC2-KCTD14E9PQ53 114 aa9.74□□□□□ -0.85
SHROOM1-208ENST00000617339 TRAV7A0A075B6U4 112 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms