RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 CDIP1Q9H305 208 aa7.6□□□□□ -1.19
RPS28-204ENST00000602140 IGLV7-46A0A075B6I9 117 aa7.59□□□□□ -1.19
RPS28-204ENST00000602140 C11orf86A6NJI1 115 aa7.59□□□□□ -1.19
RPS28-204ENST00000602140 ATP6V1G1O75348 118 aa7.59□□□□□ -1.19
RPS28-204ENST00000602140 HBDP02042 147 aa7.59□□□□□ -1.19
RPS28-204ENST00000602140 PMCHL1Q16048 86 aa7.59□□□□□ -1.19
RPS28-204ENST00000602140 TPRXLQ17RH7 258 aa7.59□□□□□ -1.19
RPS28-204ENST00000602140 CBLN2Q8IUK8 224 aa7.59□□□□□ -1.19
RPS28-204ENST00000602140 C3orf22Q8N5N4 141 aa7.59□□□□□ -1.19
RPS28-204ENST00000602140 C18orf32Q8TCD1 76 aa7.59□□□□□ -1.19
RPS28-204ENST00000602140 RPS10P5Q9NQ39 176 aa7.59□□□□□ -1.19
RPS28-204ENST00000602140 TMEM170BQ5T4T1 132 aa7.58□□□□□ -1.2
RPS28-204ENST00000602140 BAGE3Q86Y29 109 aa7.58□□□□□ -1.2
RPS28-204ENST00000602140 HIGD2AQ9BW72 106 aa7.58□□□□□ -1.2
RPS28-204ENST00000602140 CTAG1AP78358 180 aa7.57□□□□□ -1.2
RPS28-204ENST00000602140 RHEBQ15382 184 aa7.57□□□□□ -1.2
RPS28-204ENST00000602140 LCE2AQ5TA79 106 aaPredicted RBP7.57□□□□□ -1.2
RPS28-204ENST00000602140 SFTA2Q6UW10 78 aa7.57□□□□□ -1.2
RPS28-204ENST00000602140 COMMD7Q86VX2 200 aa7.57□□□□□ -1.2
RPS28-204ENST00000602140 SLC7A5P1Q8MH63 180 aa7.57□□□□□ -1.2
RPS28-204ENST00000602140 KRTAP9-2Q9BYQ4 174 aa7.57□□□□□ -1.2
RPS28-204ENST00000602140 TRAPPC1Q9Y5R8 145 aa7.57□□□□□ -1.2
RPS28-204ENST00000602140 LINC00158P58513 81 aa7.56□□□□□ -1.2
RPS28-204ENST00000602140 A0A0U1RRA0 63 aa7.55□□□□□ -1.2
RPS28-204ENST00000602140 C10orf91Q5T1B1 145 aa7.55□□□□□ -1.2
RPS28-204ENST00000602140 MUC17Q685J3 4493 aa7.55□□□□□ -1.2
RPS28-204ENST00000602140 FAT4Q6V0I7 4981 aa7.54□□□□□ -1.2
RPS28-204ENST00000602140 S100A1P23297 94 aa7.54□□□□□ -1.2
RPS28-204ENST00000602140 SPRR4Q96PI1 79 aa7.54□□□□□ -1.2
RPS28-204ENST00000602140 PPDPFQ9H3Y8 114 aa7.54□□□□□ -1.2
RPS28-204ENST00000602140 CHTOPQ9Y3Y2 248 aaKnown RBP7.54□□□□□ -1.2
RPS28-204ENST00000602140 SPAG11AQ6PDA7 123 aa7.53□□□□□ -1.2
RPS28-204ENST00000602140 TMEM223A0PJW6 202 aa7.51□□□□□ -1.21
RPS28-204ENST00000602140 ZNF706Q9Y5V0 76 aaPredicted RBP7.51□□□□□ -1.21
RPS28-204ENST00000602140 SMIM13P0DJ93 91 aa7.5□□□□□ -1.21
RPS28-204ENST00000602140 PRYO14603 147 aa7.49□□□□□ -1.21
RPS28-204ENST00000602140 NCR3O14931 201 aa7.49□□□□□ -1.21
RPS28-204ENST00000602140 BOD1L2Q8IYS8 172 aa7.49□□□□□ -1.21
RPS28-204ENST00000602140 DAND5Q8N907 189 aa7.49□□□□□ -1.21
RPS28-204ENST00000602140 TRAV12-1A0A0B4J245 112 aa7.48□□□□□ -1.21
RPS28-204ENST00000602140 MEIG1Q5JSS6 88 aa7.48□□□□□ -1.21
RPS28-204ENST00000602140 FP248Q71RG6 208 aaPredicted RBP7.48□□□□□ -1.21
RPS28-204ENST00000602140 LINC00337Q8N6G1 96 aa7.48□□□□□ -1.21
RPS28-204ENST00000602140 Q8NBF4 154 aa7.48□□□□□ -1.21
RPS28-204ENST00000602140 SMCR5Q8TEV8 140 aa7.48□□□□□ -1.21
RPS28-204ENST00000602140 IFI27L1Q96BM0 104 aa7.48□□□□□ -1.21
RPS28-204ENST00000602140 SPRR1AP35321 89 aa7.47□□□□□ -1.21
RPS28-204ENST00000602140 MIR7-3HGQ8N6C7 128 aa7.47□□□□□ -1.21
RPS28-204ENST00000602140 KCNQ1DNQ9H478 68 aa7.47□□□□□ -1.21
RPS28-204ENST00000602140 ETDCA0A1B0GVM5 59 aa7.46□□□□□ -1.22
RPS28-204ENST00000602140 KRTAP4-16G5E9R7 235 aaPredicted RBP7.46□□□□□ -1.22
RPS28-204ENST00000602140 CHCHD1Q96BP2 118 aaKnown RBP7.46□□□□□ -1.22
RPS28-204ENST00000602140 TRBV10-3A0A0K0K1G6 114 aa7.45□□□□□ -1.22
RPS28-204ENST00000602140 APOC3P02656 99 aa7.45□□□□□ -1.22
RPS28-204ENST00000602140 HERV-K104P63124 156 aa7.45□□□□□ -1.22
RPS28-204ENST00000602140 NDUFA12Q9UI09 145 aa7.45□□□□□ -1.22
RPS28-204ENST00000602140 KRTAP13-3Q3SY46 172 aa7.44□□□□□ -1.22
RPS28-204ENST00000602140 LINC00587B1AMM8 73 aa7.43□□□□□ -1.22
RPS28-204ENST00000602140 SNAPINO95295 136 aa7.43□□□□□ -1.22
RPS28-204ENST00000602140 SPINK1P00995 79 aa7.43□□□□□ -1.22
RPS28-204ENST00000602140 MYMXA0A1B0GTQ4 84 aa7.42□□□□□ -1.22
RPS28-204ENST00000602140 LINC00483Q53H64 154 aa7.42□□□□□ -1.22
RPS28-204ENST00000602140 GAGE2AQ6NT46 116 aa7.42□□□□□ -1.22
RPS28-204ENST00000602140 SVBPQ8N300 66 aa7.42□□□□□ -1.22
RPS28-204ENST00000602140 FAM19A2Q8N3H0 131 aa7.42□□□□□ -1.22
RPS28-204ENST00000602140 MAP1LC3CQ9BXW4 147 aa7.42□□□□□ -1.22
RPS28-204ENST00000602140 B5MCH6 92 aa7.41□□□□□ -1.22
RPS28-204ENST00000602140 H0Y8G0 127 aa7.41□□□□□ -1.22
RPS28-204ENST00000602140 S100A12P80511 92 aa7.41□□□□□ -1.22
RPS28-204ENST00000602140 YPEL4Q96NS1 127 aa7.41□□□□□ -1.22
RPS28-204ENST00000602140 IGLV9-49A0A0B4J1Y8 123 aa7.4□□□□□ -1.22
RPS28-204ENST00000602140 HSBP1O75506 76 aa7.4□□□□□ -1.22
RPS28-204ENST00000602140 ERC2-IT1O76042 136 aa7.4□□□□□ -1.22
RPS28-204ENST00000602140 MOBPQ13875 183 aa7.4□□□□□ -1.22
RPS28-204ENST00000602140 ASB16-AS1Q495Z4 193 aa7.4□□□□□ -1.22
RPS28-204ENST00000602140 DDTP30046 118 aa7.39□□□□□ -1.23
RPS28-204ENST00000602140 TSPEAR-AS2P59090 65 aa7.39□□□□□ -1.23
RPS28-204ENST00000602140 LCE2CQ5TA81 110 aa7.39□□□□□ -1.23
RPS28-204ENST00000602140 LEPROTO15243 131 aa7.38□□□□□ -1.23
RPS28-204ENST00000602140 Q9BRP9 147 aa7.38□□□□□ -1.23
RPS28-204ENST00000602140 LOC107984156A0A0G2JMH3 177 aa7.37□□□□□ -1.23
RPS28-204ENST00000602140 TRBV10-2A0A0K0K1G8 114 aa7.37□□□□□ -1.23
RPS28-204ENST00000602140 GHRHP01286 108 aa7.37□□□□□ -1.23
RPS28-204ENST00000602140 SSBP3-AS1Q7Z2R9 100 aa7.37□□□□□ -1.23
RPS28-204ENST00000602140 ARL17AQ8IVW1 177 aa7.37□□□□□ -1.23
RPS28-204ENST00000602140 KRTAP9-6A0A140TA67 174 aa7.36□□□□□ -1.23
RPS28-204ENST00000602140 RPS29P62273 56 aaKnown RBP7.36□□□□□ -1.23
RPS28-204ENST00000602140 Q6ZRX8 168 aa7.36□□□□□ -1.23
RPS28-204ENST00000602140 Q8N377 158 aa7.36□□□□□ -1.23
RPS28-204ENST00000602140 KRTAP4-1Q9BYQ7 146 aa7.36□□□□□ -1.23
RPS28-204ENST00000602140 J3QQQ9 107 aa7.35□□□□□ -1.23
RPS28-204ENST00000602140 LEPROTL1O95214 131 aa7.35□□□□□ -1.23
RPS28-204ENST00000602140 SEC61BP60468 96 aaKnown RBP7.35□□□□□ -1.23
RPS28-204ENST00000602140 MIEN1Q9BRT3 115 aa7.35□□□□□ -1.23
RPS28-204ENST00000602140 PLNP26678 52 aa7.34□□□□□ -1.23
RPS28-204ENST00000602140 LINC01547P58512 204 aaPredicted RBP7.34□□□□□ -1.23
RPS28-204ENST00000602140 S100A7L2Q5SY68 101 aa7.34□□□□□ -1.23
RPS28-204ENST00000602140 SPANXB1Q9NS25 103 aaPredicted RBP7.34□□□□□ -1.23
RPS28-204ENST00000602140 SLC25A20O43772 301 aa7.33□□□□□ -1.24
RPS28-204ENST00000602140 SERF1AO75920 110 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 146.2 ms