RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 C10orf25Q5T742 122 aa12.57□□□□□ -0.4
UPF1-210ENST00000600689 CHCHD10Q8WYQ3 142 aaPredicted RBP12.57□□□□□ -0.4
UPF1-210ENST00000600689 TENM1Q9UKZ4 2725 aa12.56□□□□□ -0.4
UPF1-210ENST00000600689 KRTAP10-3P60369 221 aa12.56□□□□□ -0.4
UPF1-210ENST00000600689 RBM3P98179 157 aaKnown RBP12.56□□□□□ -0.4
UPF1-210ENST00000600689 HTN3P15516 51 aa12.56□□□□□ -0.4
UPF1-210ENST00000600689 UNQ6190/PRO20217Q6UXQ8 127 aa12.56□□□□□ -0.4
UPF1-210ENST00000600689 IGLV1-51P01701 117 aa12.56□□□□□ -0.4
UPF1-210ENST00000600689 TRAV10A0A0B4J240 114 aa12.55□□□□□ -0.4
UPF1-210ENST00000600689 C19orf73Q9NVV2 129 aa12.55□□□□□ -0.4
UPF1-210ENST00000600689 Q6ZQY7 126 aa12.54□□□□□ -0.4
UPF1-210ENST00000600689 XAGE1AQ9HD64 81 aa12.53□□□□□ -0.4
UPF1-210ENST00000600689 TRRAPQ9Y4A5 3859 aa12.53□□□□□ -0.4
UPF1-210ENST00000600689 KIAA0087Q14695 138 aa12.52□□□□□ -0.4
UPF1-210ENST00000600689 RMI2Q96E14 147 aa12.52□□□□□ -0.41
UPF1-210ENST00000600689 REG3AQ06141 175 aa12.51□□□□□ -0.41
UPF1-210ENST00000600689 LINC00482Q8N8I6 264 aa12.51□□□□□ -0.41
UPF1-210ENST00000600689 Q5XG85 94 aa12.51□□□□□ -0.41
UPF1-210ENST00000600689 LINC00575Q6W349 94 aa12.51□□□□□ -0.41
UPF1-210ENST00000600689 NSD1Q96L73 2696 aaPredicted RBP12.5□□□□□ -0.41
UPF1-210ENST00000600689 FAM236DA0A1B0GTK5 79 aa12.5□□□□□ -0.41
UPF1-210ENST00000600689 FAM236CP0DP71 79 aa12.5□□□□□ -0.41
UPF1-210ENST00000600689 LINC01547P58512 204 aaPredicted RBP12.49□□□□□ -0.41
UPF1-210ENST00000600689 Q6ZQT0 140 aa12.49□□□□□ -0.41
UPF1-210ENST00000600689 LINC00167Q96N53 147 aa12.49□□□□□ -0.41
UPF1-210ENST00000600689 Q6ZVQ6 151 aa12.48□□□□□ -0.41
UPF1-210ENST00000600689 CD164L2Q6UWJ8 174 aa12.48□□□□□ -0.41
UPF1-210ENST00000600689 PRO0255Q9UI72 69 aa12.48□□□□□ -0.41
UPF1-210ENST00000600689 SPAG11BQ08648 103 aa12.47□□□□□ -0.41
UPF1-210ENST00000600689 ATP5EP2Q5VTU8 51 aa12.47□□□□□ -0.41
UPF1-210ENST00000600689 HIVEP1P15822 2718 aa12.46□□□□□ -0.41
UPF1-210ENST00000600689 INAFM1C9JVW0 142 aa12.46□□□□□ -0.41
UPF1-210ENST00000600689 NDUFC2O95298 119 aa12.45□□□□□ -0.42
UPF1-210ENST00000600689 DEFB135Q30KP9 77 aa12.45□□□□□ -0.42
UPF1-210ENST00000600689 A0A1B0GUV1 79 aa12.45□□□□□ -0.42
UPF1-210ENST00000600689 Q8N9L7 120 aa12.45□□□□□ -0.42
UPF1-210ENST00000600689 CYSRT1A8MQ03 144 aa12.44□□□□□ -0.42
UPF1-210ENST00000600689 ZNF561-AS1K7EIQ3 104 aa12.44□□□□□ -0.42
UPF1-210ENST00000600689 KLK12Q9UKR0 248 aa12.44□□□□□ -0.42
UPF1-210ENST00000600689 TRBV10-3A0A0K0K1G6 114 aa12.43□□□□□ -0.42
UPF1-210ENST00000600689 ATRQ13535 2644 aa12.43□□□□□ -0.42
UPF1-210ENST00000600689 F8WEM9 126 aa12.43□□□□□ -0.42
UPF1-210ENST00000600689 H7BZZ5 65 aa12.42□□□□□ -0.42
UPF1-210ENST00000600689 CMC4P56277 68 aaPredicted RBP12.42□□□□□ -0.42
UPF1-210ENST00000600689 TM2D3Q9BRN9 247 aa12.41□□□□□ -0.42
UPF1-210ENST00000600689 LYPD5Q6UWN5 251 aa12.4□□□□□ -0.42
UPF1-210ENST00000600689 X6R8D5 127 aa12.39□□□□□ -0.43
UPF1-210ENST00000600689 TRAV7A0A075B6U4 112 aa12.39□□□□□ -0.43
UPF1-210ENST00000600689 COX17Q14061 63 aa12.39□□□□□ -0.43
UPF1-210ENST00000600689 HIGD2BQ4VC39 106 aa12.39□□□□□ -0.43
UPF1-210ENST00000600689 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.39□□□□□ -0.43
UPF1-210ENST00000600689 MUC7Q8TAX7 377 aa12.37□□□□□ -0.43
UPF1-210ENST00000600689 DAD1P61803 113 aa12.36□□□□□ -0.43
UPF1-210ENST00000600689 TEP1Q99973 2627 aaKnown RBP12.35□□□□□ -0.43
UPF1-210ENST00000600689 DIRC1Q969H9 104 aa12.34□□□□□ -0.43
UPF1-210ENST00000600689 LINC00474Q9P2X8 69 aa12.34□□□□□ -0.43
UPF1-210ENST00000600689 CELA1Q9UNI1 258 aa12.34□□□□□ -0.43
UPF1-210ENST00000600689 IGHV4-28A0A0C4DH34 117 aa12.33□□□□□ -0.44
UPF1-210ENST00000600689 LOC110117498A0A087WWA1 95 aa12.32□□□□□ -0.44
UPF1-210ENST00000600689 LINC00336Q6ZUF6 198 aa12.32□□□□□ -0.44
UPF1-210ENST00000600689 NDUFC2-KCTD14E9PQ53 114 aa12.32□□□□□ -0.44
UPF1-210ENST00000600689 DEFB105AQ8NG35 78 aa12.32□□□□□ -0.44
UPF1-210ENST00000600689 ZNF73O43830 326 aaPredicted RBP12.31□□□□□ -0.44
UPF1-210ENST00000600689 IGLV6-57P01721 117 aa12.31□□□□□ -0.44
UPF1-210ENST00000600689 C3orf84H3BNL1 204 aa12.3□□□□□ -0.44
UPF1-210ENST00000600689 C6orf48Q9UBA6 75 aa12.3□□□□□ -0.44
UPF1-210ENST00000600689 SERP1Q9Y6X1 66 aa12.3□□□□□ -0.44
UPF1-210ENST00000600689 COX7BP24311 80 aa12.3□□□□□ -0.44
UPF1-210ENST00000600689 BPY2O14599 106 aa12.28□□□□□ -0.44
UPF1-210ENST00000600689 LINC00612Q8N6U2 182 aa12.28□□□□□ -0.44
UPF1-210ENST00000600689 F8P00451 2351 aa12.28□□□□□ -0.44
UPF1-210ENST00000600689 MPLKIPQ8TAP9 179 aa12.27□□□□□ -0.45
UPF1-210ENST00000600689 NREPQ16612 68 aa12.26□□□□□ -0.45
UPF1-210ENST00000600689 KLKP1Q107X0 134 aa12.25□□□□□ -0.45
UPF1-210ENST00000600689 C1orf43Q9BWL3 253 aa12.25□□□□□ -0.45
UPF1-210ENST00000600689 CAMK2N2Q96S95 79 aa12.25□□□□□ -0.45
UPF1-210ENST00000600689 PKIGQ9Y2B9 76 aa12.25□□□□□ -0.45
UPF1-210ENST00000600689 FP248Q71RG6 208 aaPredicted RBP12.24□□□□□ -0.45
UPF1-210ENST00000600689 MIFP14174 115 aa12.24□□□□□ -0.45
UPF1-210ENST00000600689 C9orf66Q5T8R8 295 aa12.24□□□□□ -0.45
UPF1-210ENST00000600689 TRBV7-6A0A0J9YX20 115 aa12.23□□□□□ -0.45
UPF1-210ENST00000600689 CXCL6P80162 114 aa12.22□□□□□ -0.45
UPF1-210ENST00000600689 FLNBO75369 2602 aaKnown RBP12.22□□□□□ -0.45
UPF1-210ENST00000600689 A0A0J9YWU9 116 aa12.22□□□□□ -0.45
UPF1-210ENST00000600689 IGHV4-30-4P0DP06 118 aa12.22□□□□□ -0.45
UPF1-210ENST00000600689 ANK2Q01484 3957 aa12.21□□□□□ -0.45
UPF1-210ENST00000600689 TRBV7-4A0A0J9YYF1 115 aa12.21□□□□□ -0.46
UPF1-210ENST00000600689 LYRM9A8MSI8 78 aa12.21□□□□□ -0.46
UPF1-210ENST00000600689 WIPF1O43516 503 aa12.21□□□□□ -0.46
UPF1-210ENST00000600689 TMEM254Q8TBM7 123 aa12.21□□□□□ -0.46
UPF1-210ENST00000600689 A0A0U1RQV1 116 aa12.19□□□□□ -0.46
UPF1-210ENST00000600689 PDE6GP18545 87 aa12.19□□□□□ -0.46
UPF1-210ENST00000600689 PKD1L1Q8TDX9 2849 aa12.19□□□□□ -0.46
UPF1-210ENST00000600689 BRK1Q8WUW1 75 aa12.18□□□□□ -0.46
UPF1-210ENST00000600689 FAM229BQ4G0N7 80 aa12.18□□□□□ -0.46
UPF1-210ENST00000600689 LRCOL1A6NCL2 159 aa12.17□□□□□ -0.46
UPF1-210ENST00000600689 LELP1Q5T871 98 aa12.17□□□□□ -0.46
UPF1-210ENST00000600689 Q6ZRU5 148 aa12.17□□□□□ -0.46
UPF1-210ENST00000600689 WFDC10BQ8IUB3 73 aa12.17□□□□□ -0.46
UPF1-210ENST00000600689 SMIM26A0A096LP01 95 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 182.8 ms