RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 Q8NAQ8 132 aa14.09□□□□□ -0.15
UPF1-207ENST00000599848 H3BPC8 53 aa14.09□□□□□ -0.15
UPF1-207ENST00000599848 LINC00313P59037 77 aa14.09□□□□□ -0.15
UPF1-207ENST00000599848 DNAH10OSP0CZ25 163 aa14.08□□□□□ -0.16
UPF1-207ENST00000599848 COX6B2Q6YFQ2 88 aa14.07□□□□□ -0.16
UPF1-207ENST00000599848 FAM19A4Q96LR4 140 aa14.07□□□□□ -0.16
UPF1-207ENST00000599848 FN1P02751 2386 aaKnown RBP14.06□□□□□ -0.16
UPF1-207ENST00000599848 EP400Q96L91 3159 aa14.05□□□□□ -0.16
UPF1-207ENST00000599848 ATG2AQ2TAZ0 1938 aa14.05□□□□□ -0.16
UPF1-207ENST00000599848 Q6ZRX8 168 aa14.04□□□□□ -0.16
UPF1-207ENST00000599848 TANC2Q9HCD6 1990 aa14.03□□□□□ -0.16
UPF1-207ENST00000599848 DEFB116Q30KQ4 102 aa14.03□□□□□ -0.16
UPF1-207ENST00000599848 PHF5AQ7RTV0 110 aaKnown RBP14.03□□□□□ -0.16
UPF1-207ENST00000599848 ELOF1P60002 83 aaKnown RBP14.02□□□□□ -0.16
UPF1-207ENST00000599848 TMEM254Q8TBM7 123 aa14.02□□□□□ -0.16
UPF1-207ENST00000599848 EPM2AB3EWF7 344 aa14.01□□□□□ -0.17
UPF1-207ENST00000599848 URB1-AS1Q96HZ7 61 aa14.01□□□□□ -0.17
UPF1-207ENST00000599848 IGLV5-45A0A087WSX0 123 aa14□□□□□ -0.17
UPF1-207ENST00000599848 A0A0U1RQV1 116 aa14□□□□□ -0.17
UPF1-207ENST00000599848 USP9XQ93008 2570 aaPredicted RBP14□□□□□ -0.17
UPF1-207ENST00000599848 AGRNO00468 2067 aa13.96□□□□□ -0.17
UPF1-207ENST00000599848 A0A1B0GU69 56 aa13.96□□□□□ -0.18
UPF1-207ENST00000599848 LINC01546A6NGU7 62 aa13.95□□□□□ -0.18
UPF1-207ENST00000599848 A8MTW9 85 aa13.93□□□□□ -0.18
UPF1-207ENST00000599848 COL4A2P08572 1712 aa13.92□□□□□ -0.18
UPF1-207ENST00000599848 A0A087WVE0 104 aa13.92□□□□□ -0.18
UPF1-207ENST00000599848 LINC00476Q8WZB0 136 aa13.92□□□□□ -0.18
UPF1-207ENST00000599848 CDIP1Q9H305 208 aa13.92□□□□□ -0.18
UPF1-207ENST00000599848 KLK9Q2XQG4 91 aa13.91□□□□□ -0.18
UPF1-207ENST00000599848 SSBP3-AS1Q7Z2R9 100 aa13.91□□□□□ -0.18
UPF1-207ENST00000599848 Q96NJ1 140 aa13.91□□□□□ -0.18
UPF1-207ENST00000599848 A0A096LNJ9 63 aa13.9□□□□□ -0.18
UPF1-207ENST00000599848 K7EIL1 84 aa13.9□□□□□ -0.18
UPF1-207ENST00000599848 LOC101927531A0A1B0GV80 90 aa13.89□□□□□ -0.19
UPF1-207ENST00000599848 TLN2Q9Y4G6 2542 aa13.89□□□□□ -0.19
UPF1-207ENST00000599848 TRAV22A0A0B4J277 110 aa13.88□□□□□ -0.19
UPF1-207ENST00000599848 PMAIP1Q13794 54 aa13.88□□□□□ -0.19
UPF1-207ENST00000599848 LINC00304Q8N9R0 145 aa13.88□□□□□ -0.19
UPF1-207ENST00000599848 CPAMD8Q8IZJ3 1885 aa13.88□□□□□ -0.19
UPF1-207ENST00000599848 LINC00846Q9NV44 126 aa13.87□□□□□ -0.19
UPF1-207ENST00000599848 C19orf73Q9NVV2 129 aa13.86□□□□□ -0.19
UPF1-207ENST00000599848 C1orf195Q5TG92 126 aa13.86□□□□□ -0.19
UPF1-207ENST00000599848 CCDC179H3BU77 68 aa13.85□□□□□ -0.19
UPF1-207ENST00000599848 LINC00310P59036 64 aa13.85□□□□□ -0.19
UPF1-207ENST00000599848 SMIM29Q86T20 159 aa13.84□□□□□ -0.19
UPF1-207ENST00000599848 EML5Q05BV3 1969 aa13.84□□□□□ -0.19
UPF1-207ENST00000599848 ST20-AS1Q8NBB2 130 aa13.84□□□□□ -0.19
UPF1-207ENST00000599848 CHTF8P0CG12 524 aa13.84□□□□□ -0.19
UPF1-207ENST00000599848 FASNP49327 2511 aaKnown RBP13.83□□□□□ -0.2
UPF1-207ENST00000599848 TRBV7-4A0A0J9YYF1 115 aa13.83□□□□□ -0.2
UPF1-207ENST00000599848 LOC110117498A0A087WWA1 95 aa13.83□□□□□ -0.2
UPF1-207ENST00000599848 SOSTDC1Q6X4U4 206 aa13.82□□□□□ -0.2
UPF1-207ENST00000599848 ANKRD11Q6UB99 2663 aaPredicted RBP13.81□□□□□ -0.2
UPF1-207ENST00000599848 F8P00451 2351 aa13.78□□□□□ -0.2
UPF1-207ENST00000599848 MUC4Q99102 2169 aa13.77□□□□□ -0.21
UPF1-207ENST00000599848 WDR87Q6ZQQ6 2873 aa13.76□□□□□ -0.21
UPF1-207ENST00000599848 ZNF861PO60384 105 aa13.76□□□□□ -0.21
UPF1-207ENST00000599848 MTORP42345 2549 aa13.76□□□□□ -0.21
UPF1-207ENST00000599848 A0A087WTM6 91 aa13.75□□□□□ -0.21
UPF1-207ENST00000599848 USP9YO00507 2555 aaPredicted RBP13.75□□□□□ -0.21
UPF1-207ENST00000599848 RBM12B-AS1Q9P1G2 102 aa13.75□□□□□ -0.21
UPF1-207ENST00000599848 TM2D3Q9BRN9 247 aa13.74□□□□□ -0.21
UPF1-207ENST00000599848 A8MWP4 228 aa13.73□□□□□ -0.21
UPF1-207ENST00000599848 MRPL34Q9BQ48 92 aaKnown RBP13.73□□□□□ -0.21
UPF1-207ENST00000599848 VPREB1P12018 145 aa13.71□□□□□ -0.21
UPF1-207ENST00000599848 PSPHP1O15172 72 aa13.71□□□□□ -0.21
UPF1-207ENST00000599848 Q6ZQT0 140 aa13.7□□□□□ -0.22
UPF1-207ENST00000599848 IGLV1-50A0A075B6I6 118 aa13.69□□□□□ -0.22
UPF1-207ENST00000599848 KRTAP10-11P60412 298 aa13.69□□□□□ -0.22
UPF1-207ENST00000599848 CEP295Q9C0D2 2601 aa13.69□□□□□ -0.22
UPF1-207ENST00000599848 PKD1L2Q7Z442 2459 aa13.68□□□□□ -0.22
UPF1-207ENST00000599848 KCNQ1DNQ9H478 68 aa13.68□□□□□ -0.22
UPF1-207ENST00000599848 GOLGB1Q14789 3259 aaKnown RBP13.68□□□□□ -0.22
UPF1-207ENST00000599848 C9orf163Q8N9P6 203 aa13.67□□□□□ -0.22
UPF1-207ENST00000599848 IGLV6-57P01721 117 aa13.66□□□□□ -0.22
UPF1-207ENST00000599848 CSNK1G2-AS1Q8NCQ2 148 aa13.65□□□□□ -0.22
UPF1-207ENST00000599848 PLA2G2DQ9UNK4 145 aa13.63□□□□□ -0.23
UPF1-207ENST00000599848 TLX1NBP0CAT3 122 aa13.62□□□□□ -0.23
UPF1-207ENST00000599848 PRR34Q9NV39 138 aa13.62□□□□□ -0.23
UPF1-207ENST00000599848 IGLV7-43P04211 117 aa13.58□□□□□ -0.24
UPF1-207ENST00000599848 A0A096LNT2 108 aa13.58□□□□□ -0.24
UPF1-207ENST00000599848 PTPRBP23467 1997 aa13.56□□□□□ -0.24
UPF1-207ENST00000599848 APLNQ9ULZ1 77 aa13.56□□□□□ -0.24
UPF1-207ENST00000599848 SETD2Q9BYW2 2564 aaPredicted RBP13.56□□□□□ -0.24
UPF1-207ENST00000599848 ZNF575Q86XF7 245 aa13.56□□□□□ -0.24
UPF1-207ENST00000599848 IGLV5-37A0A075B6J1 123 aa13.56□□□□□ -0.24
UPF1-207ENST00000599848 LINC00612Q8N6U2 182 aa13.55□□□□□ -0.24
UPF1-207ENST00000599848 CENPFP49454 3210 aa13.55□□□□□ -0.24
UPF1-207ENST00000599848 LINC00528Q8N1L1 170 aa13.54□□□□□ -0.24
UPF1-207ENST00000599848 Q9UF83 564 aa13.52□□□□□ -0.24
UPF1-207ENST00000599848 CNBPP62633 177 aaKnown RBP13.52□□□□□ -0.25
UPF1-207ENST00000599848 SERTAD4-AS1Q5TG53 156 aa13.52□□□□□ -0.25
UPF1-207ENST00000599848 SPTBN4Q9H254 2564 aa13.51□□□□□ -0.25
UPF1-207ENST00000599848 C8orf17Q9NRJ1 99 aa13.51□□□□□ -0.25
UPF1-207ENST00000599848 COL27A1Q8IZC6 1860 aaPredicted RBP13.5□□□□□ -0.25
UPF1-207ENST00000599848 SMR3BP02814 79 aaPredicted RBP13.5□□□□□ -0.25
UPF1-207ENST00000599848 FAM168BA1KXE4 195 aa13.5□□□□□ -0.25
UPF1-207ENST00000599848 A0A1B0GVX0 72 aa13.5□□□□□ -0.25
UPF1-207ENST00000599848 FAM218AQ96MZ4 157 aa13.5□□□□□ -0.25
UPF1-207ENST00000599848 ERC2-IT1O76042 136 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms