RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.57□□□□□ -1.52
TRIM28-210ENST00000597618 H3BRM9 83 aa5.57□□□□□ -1.52
TRIM28-210ENST00000597618 COX17Q14061 63 aa5.57□□□□□ -1.52
TRIM28-210ENST00000597618 MRPL18Q9H0U6 180 aaKnown RBP5.57□□□□□ -1.52
TRIM28-210ENST00000597618 ERG28Q9UKR5 140 aa5.57□□□□□ -1.52
TRIM28-210ENST00000597618 IGLV8-61A0A075B6I0 122 aa5.56□□□□□ -1.52
TRIM28-210ENST00000597618 M0R2T5 61 aa5.56□□□□□ -1.52
TRIM28-210ENST00000597618 LINC00483Q53H64 154 aa5.56□□□□□ -1.52
TRIM28-210ENST00000597618 Q8NDZ9 215 aa5.56□□□□□ -1.52
TRIM28-210ENST00000597618 SCGB3A1Q96QR1 104 aa5.56□□□□□ -1.52
TRIM28-210ENST00000597618 C9JQL5 133 aa5.55□□□□□ -1.52
TRIM28-210ENST00000597618 MOBPQ13875 183 aa5.55□□□□□ -1.52
TRIM28-210ENST00000597618 PCOTHQ58A44 107 aa5.55□□□□□ -1.52
TRIM28-210ENST00000597618 SSBP3-AS1Q7Z2R9 100 aa5.54□□□□□ -1.52
TRIM28-210ENST00000597618 CST9LQ9H4G1 147 aa5.54□□□□□ -1.52
TRIM28-210ENST00000597618 IGLV9-49A0A0B4J1Y8 123 aa5.53□□□□□ -1.52
TRIM28-210ENST00000597618 IGLV5-39A0A0G2JS06 123 aa5.53□□□□□ -1.52
TRIM28-210ENST00000597618 LINC01549A6NIU2 74 aa5.53□□□□□ -1.52
TRIM28-210ENST00000597618 PRYO14603 147 aa5.53□□□□□ -1.52
TRIM28-210ENST00000597618 ADCYAP1P18509 176 aa5.53□□□□□ -1.52
TRIM28-210ENST00000597618 PEA15Q15121 130 aa5.53□□□□□ -1.52
TRIM28-210ENST00000597618 SMCR5Q8TEV8 140 aa5.53□□□□□ -1.52
TRIM28-210ENST00000597618 FLGP20930 4061 aaPredicted RBP5.52□□□□□ -1.53
TRIM28-210ENST00000597618 PMVKQ15126 192 aa5.52□□□□□ -1.53
TRIM28-210ENST00000597618 GAGE2AQ6NT46 116 aa5.52□□□□□ -1.53
TRIM28-210ENST00000597618 SFTA2Q6UW10 78 aa5.52□□□□□ -1.53
TRIM28-210ENST00000597618 ETDCA0A1B0GVM5 59 aa5.51□□□□□ -1.53
TRIM28-210ENST00000597618 SPRR1AP35321 89 aa5.51□□□□□ -1.53
TRIM28-210ENST00000597618 ZNF625Q96I27 306 aaPredicted RBP5.51□□□□□ -1.53
TRIM28-210ENST00000597618 SSPOA2VEC9 5147 aa5.51□□□□□ -1.53
TRIM28-210ENST00000597618 KCNQ1DNQ9H478 68 aa5.5□□□□□ -1.53
TRIM28-210ENST00000597618 USH2AO75445 5202 aa5.49□□□□□ -1.53
TRIM28-210ENST00000597618 KRTAP4-16G5E9R7 235 aaPredicted RBP5.49□□□□□ -1.53
TRIM28-210ENST00000597618 IGLC3P0DOY3 106 aa5.49□□□□□ -1.53
TRIM28-210ENST00000597618 COX6B2Q6YFQ2 88 aa5.49□□□□□ -1.53
TRIM28-210ENST00000597618 ZNF22P17026 224 aaPredicted RBP5.48□□□□□ -1.53
TRIM28-210ENST00000597618 LINC00158P58513 81 aa5.48□□□□□ -1.53
TRIM28-210ENST00000597618 C9orf92A6NGG3 77 aa5.46□□□□□ -1.54
TRIM28-210ENST00000597618 LINC01546A6NGU7 62 aa5.46□□□□□ -1.54
TRIM28-210ENST00000597618 NCR3O14931 201 aa5.46□□□□□ -1.54
TRIM28-210ENST00000597618 MT-ND4LP03901 98 aa5.46□□□□□ -1.54
TRIM28-210ENST00000597618 S100A12P80511 92 aa5.46□□□□□ -1.54
TRIM28-210ENST00000597618 C9orf153Q5TBE3 101 aa5.46□□□□□ -1.54
TRIM28-210ENST00000597618 BOD1L2Q8IYS8 172 aa5.46□□□□□ -1.54
TRIM28-210ENST00000597618 ANAPC16Q96DE5 110 aa5.46□□□□□ -1.54
TRIM28-210ENST00000597618 KRTAP3-3Q9BYR6 98 aa5.46□□□□□ -1.54
TRIM28-210ENST00000597618 KRTAP3-2Q9BYR7 98 aa5.46□□□□□ -1.54
TRIM28-210ENST00000597618 B5MCH6 92 aa5.45□□□□□ -1.54
TRIM28-210ENST00000597618 ERC2-IT1O76042 136 aa5.45□□□□□ -1.54
TRIM28-210ENST00000597618 KIAA1644Q3SXP7 199 aa5.45□□□□□ -1.54
TRIM28-210ENST00000597618 LIMD2Q9BT23 127 aa5.45□□□□□ -1.54
TRIM28-210ENST00000597618 TRAV9-1A0A075B6T8 112 aa5.44□□□□□ -1.54
TRIM28-210ENST00000597618 TRBV10-3A0A0K0K1G6 114 aa5.44□□□□□ -1.54
TRIM28-210ENST00000597618 A0A0U1RRA0 63 aa5.44□□□□□ -1.54
TRIM28-210ENST00000597618 NDUFA6P56556 154 aa5.44□□□□□ -1.54
TRIM28-210ENST00000597618 ATP6V1G1O75348 118 aa5.43□□□□□ -1.54
TRIM28-210ENST00000597618 TMEM170BQ5T4T1 132 aa5.42□□□□□ -1.54
TRIM28-210ENST00000597618 Q6ZRX8 168 aa5.42□□□□□ -1.54
TRIM28-210ENST00000597618 FA2HQ7L5A8 372 aa5.42□□□□□ -1.54
TRIM28-210ENST00000597618 Q9BRP9 147 aa5.42□□□□□ -1.54
TRIM28-210ENST00000597618 SMCO4Q9NRQ5 59 aa5.42□□□□□ -1.54
TRIM28-210ENST00000597618 C11orf86A6NJI1 115 aa5.41□□□□□ -1.54
TRIM28-210ENST00000597618 IGLV6-57P01721 117 aa5.41□□□□□ -1.54
TRIM28-210ENST00000597618 FCGBPQ9Y6R7 5405 aaPredicted RBP5.4□□□□□ -1.54
TRIM28-210ENST00000597618 SMIM13P0DJ93 91 aa5.4□□□□□ -1.54
TRIM28-210ENST00000597618 MEIG1Q5JSS6 88 aa5.4□□□□□ -1.54
TRIM28-210ENST00000597618 MIR7-3HGQ8N6C7 128 aa5.4□□□□□ -1.54
TRIM28-210ENST00000597618 DDTP30046 118 aa5.39□□□□□ -1.55
TRIM28-210ENST00000597618 CFC1P0CG37 223 aa5.38□□□□□ -1.55
TRIM28-210ENST00000597618 RPL37P61927 97 aaKnown RBP5.38□□□□□ -1.55
TRIM28-210ENST00000597618 JOSD1Q15040 202 aaPredicted RBP5.38□□□□□ -1.55
TRIM28-210ENST00000597618 CLLU1Q5K131 121 aa5.38□□□□□ -1.55
TRIM28-210ENST00000597618 LINC00587B1AMM8 73 aa5.37□□□□□ -1.55
TRIM28-210ENST00000597618 HERV-K104P63124 156 aa5.37□□□□□ -1.55
TRIM28-210ENST00000597618 HRCT1Q6UXD1 115 aa5.37□□□□□ -1.55
TRIM28-210ENST00000597618 BAGE3Q86Y29 109 aa5.37□□□□□ -1.55
TRIM28-210ENST00000597618 SYNE2Q8WXH0 6885 aaKnown RBP5.37□□□□□ -1.55
TRIM28-210ENST00000597618 MACF1Q9UPN3 7388 aaKnown RBP5.37□□□□□ -1.55
TRIM28-210ENST00000597618 A0A096LNJ9 63 aa5.36□□□□□ -1.55
TRIM28-210ENST00000597618 TRBV10-2A0A0K0K1G8 114 aa5.36□□□□□ -1.55
TRIM28-210ENST00000597618 C5orf52A6NGY3 159 aa5.36□□□□□ -1.55
TRIM28-210ENST00000597618 HBDP02042 147 aa5.36□□□□□ -1.55
TRIM28-210ENST00000597618 MAP1LC3CQ9BXW4 147 aa5.36□□□□□ -1.55
TRIM28-210ENST00000597618 TMEM223A0PJW6 202 aa5.35□□□□□ -1.55
TRIM28-210ENST00000597618 SLC25A34Q6PIV7 304 aa5.35□□□□□ -1.55
TRIM28-210ENST00000597618 UQCC3Q6UW78 93 aa5.35□□□□□ -1.55
TRIM28-210ENST00000597618 ST20-AS1Q8NBB2 130 aa5.35□□□□□ -1.55
TRIM28-210ENST00000597618 TMEM218A2RU14 115 aa5.34□□□□□ -1.55
TRIM28-210ENST00000597618 SPANXB1Q9NS25 103 aaPredicted RBP5.34□□□□□ -1.55
TRIM28-210ENST00000597618 CHTOPQ9Y3Y2 248 aaKnown RBP5.34□□□□□ -1.55
TRIM28-210ENST00000597618 TRAV23DV6A0A075B6W5 121 aa5.33□□□□□ -1.56
TRIM28-210ENST00000597618 LOC107984156A0A0G2JMH3 177 aa5.33□□□□□ -1.56
TRIM28-210ENST00000597618 S100A7L2Q5SY68 101 aa5.33□□□□□ -1.56
TRIM28-210ENST00000597618 ARL17AQ8IVW1 177 aa5.33□□□□□ -1.56
TRIM28-210ENST00000597618 IFITM2Q01629 132 aa5.32□□□□□ -1.56
TRIM28-210ENST00000597618 CD164Q04900 197 aa5.32□□□□□ -1.56
TRIM28-210ENST00000597618 FABP9Q0Z7S8 132 aa5.32□□□□□ -1.56
TRIM28-210ENST00000597618 COX19Q49B96 90 aa5.32□□□□□ -1.56
TRIM28-210ENST00000597618 Q6Q795 121 aa5.32□□□□□ -1.56
TRIM28-210ENST00000597618 SEC11CQ9BY50 192 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms