RNA–Protein interactions for RNA: ENST00000589349.5

DNMT1-219, Transcript of DNA methyltransferase 1, human

TSL 4

Gene DNMT1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-219	ENST00000589349	TLX1NB	P0CAT3	122 aa		5.04	□□□□□ -1.6
DNMT1-219	ENST00000589349	MT1HL1	P0DM35	61 aa		5.04	□□□□□ -1.6
DNMT1-219	ENST00000589349	PMVK	Q15126	192 aa		5.04	□□□□□ -1.6
DNMT1-219	ENST00000589349	PMCHL1	Q16048	86 aa		5.04	□□□□□ -1.6
DNMT1-219	ENST00000589349	CST9L	Q9H4G1	147 aa		5.04	□□□□□ -1.6
DNMT1-219	ENST00000589349	TINCR	A0A1B0GVN0	87 aa		5.03	□□□□□ -1.6
DNMT1-219	ENST00000589349	ATP5L	O75964	103 aa		5.03	□□□□□ -1.6
DNMT1-219	ENST00000589349	IGLV7-43	P04211	117 aa		5.03	□□□□□ -1.6
DNMT1-219	ENST00000589349	CXCL5	P42830	114 aa		5.03	□□□□□ -1.6
DNMT1-219	ENST00000589349	LBH	Q53QV2	105 aa	Predicted RBP	5.03	□□□□□ -1.6
DNMT1-219	ENST00000589349	C9orf129	Q5T035	196 aa	Known RBP	5.03	□□□□□ -1.6
DNMT1-219	ENST00000589349	LCE1E	Q5T753	118 aa		5.03	□□□□□ -1.6
DNMT1-219	ENST00000589349	SVBP	Q8N300	66 aa		5.03	□□□□□ -1.6
DNMT1-219	ENST00000589349	LINC00614	P0C842	121 aa		5.02	□□□□□ -1.61
DNMT1-219	ENST00000589349	PFN2	P35080	140 aa		5.02	□□□□□ -1.61
DNMT1-219	ENST00000589349	SRSF9	Q13242	221 aa	Known RBP eCLIP	5.02	□□□□□ -1.61
DNMT1-219	ENST00000589349	PDZD11	Q5EBL8	140 aa		5.02	□□□□□ -1.61
DNMT1-219	ENST00000589349	CARHSP1	Q9Y2V2	147 aa	Known RBP	5.02	□□□□□ -1.61
DNMT1-219	ENST00000589349	RPL37AP8	A6NKH3	93 aa		5.01	□□□□□ -1.61
DNMT1-219	ENST00000589349	HBD	P02042	147 aa		5.01	□□□□□ -1.61
DNMT1-219	ENST00000589349	TMEM170B	Q5T4T1	132 aa		5.01	□□□□□ -1.61
DNMT1-219	ENST00000589349	BAGE3	Q86Y29	109 aa		5.01	□□□□□ -1.61
DNMT1-219	ENST00000589349	NKAPP1	Q8N9T2	125 aa		5.01	□□□□□ -1.61
DNMT1-219	ENST00000589349	C22orf24	Q9Y442	160 aa		5.01	□□□□□ -1.61
DNMT1-219	ENST00000589349	C10orf91	Q5T1B1	145 aa		5	□□□□□ -1.61
DNMT1-219	ENST00000589349	FAM19A3	Q7Z5A8	133 aa		5	□□□□□ -1.61
DNMT1-219	ENST00000589349	KRTAP11-1	Q8IUC1	163 aa		5	□□□□□ -1.61
DNMT1-219	ENST00000589349	ZNF625	Q96I27	306 aa	Predicted RBP	5	□□□□□ -1.61
DNMT1-219	ENST00000589349		H0Y8G0	127 aa		4.99	□□□□□ -1.61
DNMT1-219	ENST00000589349		H0Y9J4	135 aa		4.99	□□□□□ -1.61
DNMT1-219	ENST00000589349	ATP6V1G1	O75348	118 aa		4.99	□□□□□ -1.61
DNMT1-219	ENST00000589349	MRPL55	Q7Z7F7	128 aa	Known RBP	4.99	□□□□□ -1.61
DNMT1-219	ENST00000589349	C18orf32	Q8TCD1	76 aa		4.99	□□□□□ -1.61
DNMT1-219	ENST00000589349	LRP1	Q07954	4544 aa	Known RBP	4.98	□□□□□ -1.61
DNMT1-219	ENST00000589349	LINC01546	A6NGU7	62 aa		4.98	□□□□□ -1.61
DNMT1-219	ENST00000589349	UBE2A	P49459	152 aa		4.98	□□□□□ -1.61
DNMT1-219	ENST00000589349	KRTAP10-8	P60410	259 aa		4.98	□□□□□ -1.61
DNMT1-219	ENST00000589349	NOTCH2NL	Q7Z3S9	236 aa		4.98	□□□□□ -1.61
DNMT1-219	ENST00000589349	KRTAP7-1	Q8IUC3	87 aa		4.98	□□□□□ -1.61
DNMT1-219	ENST00000589349	CHTOP	Q9Y3Y2	248 aa	Known RBP	4.98	□□□□□ -1.61
DNMT1-219	ENST00000589349		A0A0U1RRA0	63 aa		4.97	□□□□□ -1.61
DNMT1-219	ENST00000589349	NUPR1	O60356	82 aa		4.97	□□□□□ -1.61
DNMT1-219	ENST00000589349	RPL28	P46779	137 aa	Known RBP	4.97	□□□□□ -1.61
DNMT1-219	ENST00000589349	LINC00158	P58513	81 aa		4.97	□□□□□ -1.61
DNMT1-219	ENST00000589349	IGKV2-28	A0A075B6P5	120 aa		4.96	□□□□□ -1.62
DNMT1-219	ENST00000589349	ZNF861P	O60384	105 aa		4.96	□□□□□ -1.62
DNMT1-219	ENST00000589349	HSBP1	O75506	76 aa		4.96	□□□□□ -1.62
DNMT1-219	ENST00000589349	IGKV2D-28	P01615	120 aa		4.96	□□□□□ -1.62
DNMT1-219	ENST00000589349	IGLC3	P0DOY3	106 aa		4.96	□□□□□ -1.62
DNMT1-219	ENST00000589349	ZNF22	P17026	224 aa	Predicted RBP	4.96	□□□□□ -1.62
DNMT1-219	ENST00000589349	LINC00167	Q96N53	147 aa		4.96	□□□□□ -1.62
DNMT1-219	ENST00000589349	C11orf86	A6NJI1	115 aa		4.95	□□□□□ -1.62
DNMT1-219	ENST00000589349	BCE1	O60756	84 aa		4.95	□□□□□ -1.62
DNMT1-219	ENST00000589349	SCO1	O75880	301 aa		4.95	□□□□□ -1.62
DNMT1-219	ENST00000589349	CBLN2	Q8IUK8	224 aa		4.95	□□□□□ -1.62
DNMT1-219	ENST00000589349	IFI27L1	Q96BM0	104 aa		4.95	□□□□□ -1.62
DNMT1-219	ENST00000589349	ERG28	Q9UKR5	140 aa		4.95	□□□□□ -1.62
DNMT1-219	ENST00000589349	IGLV1-50	A0A075B6I6	118 aa		4.94	□□□□□ -1.62
DNMT1-219	ENST00000589349		A0A096LNJ9	63 aa		4.94	□□□□□ -1.62
DNMT1-219	ENST00000589349	IGLV9-49	A0A0B4J1Y8	123 aa		4.94	□□□□□ -1.62
DNMT1-219	ENST00000589349	TSPAN13	O95857	204 aa		4.94	□□□□□ -1.62
DNMT1-219	ENST00000589349	RPL13A	P40429	203 aa	Known RBP	4.94	□□□□□ -1.62
DNMT1-219	ENST00000589349	MEIG1	Q5JSS6	88 aa		4.94	□□□□□ -1.62
DNMT1-219	ENST00000589349	FAM19A2	Q8N3H0	131 aa		4.94	□□□□□ -1.62
DNMT1-219	ENST00000589349	CHCHD1	Q96BP2	118 aa	Known RBP	4.94	□□□□□ -1.62
DNMT1-219	ENST00000589349	SND1-IT1	Q9HBX3	110 aa		4.94	□□□□□ -1.62
DNMT1-219	ENST00000589349	TP73-AS1	Q9UF72	201 aa		4.94	□□□□□ -1.62
DNMT1-219	ENST00000589349	PRR4	Q16378	134 aa		4.93	□□□□□ -1.62
DNMT1-219	ENST00000589349	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.93	□□□□□ -1.62
DNMT1-219	ENST00000589349	FAM19A1	Q7Z5A9	133 aa		4.93	□□□□□ -1.62
DNMT1-219	ENST00000589349	TRGC2	P03986	189 aa		4.92	□□□□□ -1.62
DNMT1-219	ENST00000589349	KRTAP5-11	Q6L8G4	156 aa		4.92	□□□□□ -1.62
DNMT1-219	ENST00000589349	SFTA2	Q6UW10	78 aa		4.92	□□□□□ -1.62
DNMT1-219	ENST00000589349	SLC7A5P1	Q8MH63	180 aa		4.92	□□□□□ -1.62
DNMT1-219	ENST00000589349	FAT3	Q8TDW7	4589 aa		4.91	□□□□□ -1.62
DNMT1-219	ENST00000589349	FABP4	P15090	132 aa		4.91	□□□□□ -1.62
DNMT1-219	ENST00000589349	COX17	Q14061	63 aa		4.91	□□□□□ -1.62
DNMT1-219	ENST00000589349	TYMSOS	Q8TAI1	123 aa		4.91	□□□□□ -1.62
DNMT1-219	ENST00000589349	ANAPC11	Q9NYG5	84 aa		4.91	□□□□□ -1.62
DNMT1-219	ENST00000589349	TRAV12-1	A0A0B4J245	112 aa		4.9	□□□□□ -1.63
DNMT1-219	ENST00000589349	TMEM223	A0PJW6	202 aa		4.9	□□□□□ -1.63
DNMT1-219	ENST00000589349	TMEM238	C9JI98	176 aa		4.9	□□□□□ -1.63
DNMT1-219	ENST00000589349	LEPROTL1	O95214	131 aa		4.9	□□□□□ -1.63
DNMT1-219	ENST00000589349	SMIM13	P0DJ93	91 aa		4.9	□□□□□ -1.63
DNMT1-219	ENST00000589349	CRYGA	P11844	174 aa		4.9	□□□□□ -1.63
DNMT1-219	ENST00000589349	PRLH	P81277	87 aa		4.9	□□□□□ -1.63
DNMT1-219	ENST00000589349		A0A087X002	238 aa		4.89	□□□□□ -1.63
DNMT1-219	ENST00000589349	IGKV2D-26	A0A0A0MRZ7	120 aa		4.89	□□□□□ -1.63
DNMT1-219	ENST00000589349	NCR3	O14931	201 aa		4.89	□□□□□ -1.63
DNMT1-219	ENST00000589349	SERF1A	O75920	110 aa		4.89	□□□□□ -1.63
DNMT1-219	ENST00000589349	KRTAP1-4	P0C5Y4	121 aa		4.89	□□□□□ -1.63
DNMT1-219	ENST00000589349	ADAMTSL4-AS1	Q5T5F5	129 aa		4.89	□□□□□ -1.63
DNMT1-219	ENST00000589349	BOD1L2	Q8IYS8	172 aa		4.89	□□□□□ -1.63
DNMT1-219	ENST00000589349	HIGD2A	Q9BW72	106 aa		4.89	□□□□□ -1.63
DNMT1-219	ENST00000589349	MAP1LC3C	Q9BXW4	147 aa		4.89	□□□□□ -1.63
DNMT1-219	ENST00000589349	HSPB8	Q9UJY1	196 aa		4.89	□□□□□ -1.63
DNMT1-219	ENST00000589349	PKHD1L1	Q86WI1	4243 aa		4.89	□□□□□ -1.63
DNMT1-219	ENST00000589349	MYMX	A0A1B0GTQ4	84 aa		4.88	□□□□□ -1.63
DNMT1-219	ENST00000589349	LINC00587	B1AMM8	73 aa		4.88	□□□□□ -1.63
DNMT1-219	ENST00000589349	HERVK_113	P61574	105 aa		4.88	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms