RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 TNRC18O15417 2968 aaPredicted RBP1.91□□□□□ -2.1
NUP88-209ENST00000574855 ARFGEF3Q5TH69 2177 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 CNOT1A5YKK6 2376 aaKnown RBP1.9□□□□□ -2.11
NUP88-209ENST00000574855 FCER1GP30273 86 aa1.9□□□□□ -2.11
NUP88-209ENST00000574855 IFI27P40305 119 aaPredicted RBP1.9□□□□□ -2.11
NUP88-209ENST00000574855 LY6EQ16553 131 aa1.9□□□□□ -2.11
NUP88-209ENST00000574855 CSAG1Q6PB30 78 aa1.9□□□□□ -2.11
NUP88-209ENST00000574855 BRD3OSQ6XYD6 125 aa1.9□□□□□ -2.11
NUP88-209ENST00000574855 IFI27L1Q96BM0 104 aa1.9□□□□□ -2.11
NUP88-209ENST00000574855 RHPN1-AS1Q9BWJ2 59 aa1.9□□□□□ -2.11
NUP88-209ENST00000574855 CNFNQ9BYD5 112 aa1.9□□□□□ -2.11
NUP88-209ENST00000574855 PRO2289Q9P1D8 64 aa1.9□□□□□ -2.11
NUP88-209ENST00000574855 PSORS1C2Q9UIG4 136 aa1.9□□□□□ -2.11
NUP88-209ENST00000574855 C22orf24Q9Y442 160 aa1.9□□□□□ -2.11
NUP88-209ENST00000574855 PRUNE2Q8WUY3 3088 aa1.9□□□□□ -2.11
NUP88-209ENST00000574855 TNCP24821 2201 aa1.89□□□□□ -2.11
NUP88-209ENST00000574855 TRIOO75962 3097 aa1.89□□□□□ -2.11
NUP88-209ENST00000574855 LAMA1P25391 3075 aa1.89□□□□□ -2.11
NUP88-209ENST00000574855 TRAV12-3A0A0B4J271 114 aa1.89□□□□□ -2.11
NUP88-209ENST00000574855 TEX49A0A1B0GTD5 131 aa1.89□□□□□ -2.11
NUP88-209ENST00000574855 CLPSL1A2RUU4 121 aa1.89□□□□□ -2.11
NUP88-209ENST00000574855 LINC01546A6NGU7 62 aa1.89□□□□□ -2.11
NUP88-209ENST00000574855 COX8AP10176 69 aa1.89□□□□□ -2.11
NUP88-209ENST00000574855 UBE2D3P61077 147 aa1.89□□□□□ -2.11
NUP88-209ENST00000574855 UBE2D2P62837 147 aa1.89□□□□□ -2.11
NUP88-209ENST00000574855 LINC01600Q96MT4 127 aa1.89□□□□□ -2.11
NUP88-209ENST00000574855 A0A0C4DFX4 3053 aa1.89□□□□□ -2.11
NUP88-209ENST00000574855 CR1P17927 2039 aa1.88□□□□□ -2.11
NUP88-209ENST00000574855 ACACAQ13085 2346 aa1.88□□□□□ -2.11
NUP88-209ENST00000574855 PLCE1Q9P212 2302 aa1.88□□□□□ -2.11
NUP88-209ENST00000574855 TRBV7-3A0A075B6L6 115 aa1.88□□□□□ -2.11
NUP88-209ENST00000574855 TRAV22A0A0B4J277 110 aa1.88□□□□□ -2.11
NUP88-209ENST00000574855 IGHV3-33P01772 117 aa1.88□□□□□ -2.11
NUP88-209ENST00000574855 HRES1P13985 223 aa1.88□□□□□ -2.11
NUP88-209ENST00000574855 PLNP26678 52 aa1.88□□□□□ -2.11
NUP88-209ENST00000574855 LINC00315P59091 139 aa1.88□□□□□ -2.11
NUP88-209ENST00000574855 CNBPP62633 177 aaKnown RBP1.88□□□□□ -2.11
NUP88-209ENST00000574855 DEFB112Q30KQ8 113 aa1.88□□□□□ -2.11
NUP88-209ENST00000574855 Q5VV11 94 aa1.88□□□□□ -2.11
NUP88-209ENST00000574855 TIMM21Q9BVV7 248 aa1.88□□□□□ -2.11
NUP88-209ENST00000574855 PRO1854Q9UHT4 67 aa1.88□□□□□ -2.11
NUP88-209ENST00000574855 RIF1Q5UIP0 2472 aaKnown RBP1.88□□□□□ -2.11
NUP88-209ENST00000574855 EYSQ5T1H1 3165 aa1.87□□□□□ -2.11
NUP88-209ENST00000574855 IGKV3-7A0A075B6H7 116 aa1.87□□□□□ -2.11
NUP88-209ENST00000574855 H3BVH4 76 aa1.87□□□□□ -2.11
NUP88-209ENST00000574855 APC2O95996 2303 aa1.87□□□□□ -2.11
NUP88-209ENST00000574855 MGPP08493 103 aa1.87□□□□□ -2.11
NUP88-209ENST00000574855 SMIM13P0DJ93 91 aa1.87□□□□□ -2.11
NUP88-209ENST00000574855 VCANP13611 3396 aa1.87□□□□□ -2.11
NUP88-209ENST00000574855 KLKP1Q107X0 134 aa1.87□□□□□ -2.11
NUP88-209ENST00000574855 C1orf137Q5JT78 98 aa1.87□□□□□ -2.11
NUP88-209ENST00000574855 CFAP126Q5VTH2 177 aa1.87□□□□□ -2.11
NUP88-209ENST00000574855 Q6ZTI0 123 aa1.87□□□□□ -2.11
NUP88-209ENST00000574855 NDUFA11Q86Y39 141 aa1.87□□□□□ -2.11
NUP88-209ENST00000574855 SMIM2Q9BVW6 85 aa1.87□□□□□ -2.11
NUP88-209ENST00000574855 USP34Q70CQ2 3546 aa1.87□□□□□ -2.11
NUP88-209ENST00000574855 ZFHX2Q9C0A1 2572 aaPredicted RBP1.86□□□□□ -2.11
NUP88-209ENST00000574855 PKDREJQ9NTG1 2253 aa1.86□□□□□ -2.11
NUP88-209ENST00000574855 IGKV2D-24A0A075B6R9 120 aa1.86□□□□□ -2.11
NUP88-209ENST00000574855 TRAV23DV6A0A075B6W5 121 aa1.86□□□□□ -2.11
NUP88-209ENST00000574855 TRBV10-1A0A0K0K1A3 114 aa1.86□□□□□ -2.11
NUP88-209ENST00000574855 TRBV6-5A0A0K0K1A5 114 aa1.86□□□□□ -2.11
NUP88-209ENST00000574855 SDHAF1A6NFY7 115 aa1.86□□□□□ -2.11
NUP88-209ENST00000574855 F8VRH5 84 aa1.86□□□□□ -2.11
NUP88-209ENST00000574855 BCE1O60756 84 aa1.86□□□□□ -2.11
NUP88-209ENST00000574855 UBE2D1P51668 147 aa1.86□□□□□ -2.11
NUP88-209ENST00000574855 SFTA2Q6UW10 78 aa1.86□□□□□ -2.11
NUP88-209ENST00000574855 C4orf3Q8WVX3 66 aa1.86□□□□□ -2.11
NUP88-209ENST00000574855 TTC28Q96AY4 2481 aa1.86□□□□□ -2.11
NUP88-209ENST00000574855 ROS1P08922 2347 aa1.86□□□□□ -2.11
NUP88-209ENST00000574855 PCNX1Q96RV3 2341 aa1.86□□□□□ -2.11
NUP88-209ENST00000574855 PTPRQQ9UMZ3 2332 aa1.86□□□□□ -2.11
NUP88-209ENST00000574855 CUL9Q8IWT3 2517 aa1.85□□□□□ -2.11
NUP88-209ENST00000574855 A0A096LNT2 108 aa1.85□□□□□ -2.11
NUP88-209ENST00000574855 CHKB-CPT1BH3BT56 60 aa1.85□□□□□ -2.11
NUP88-209ENST00000574855 I3L3M4 83 aa1.85□□□□□ -2.11
NUP88-209ENST00000574855 ACYP1P07311 99 aa1.85□□□□□ -2.11
NUP88-209ENST00000574855 RNASE3P12724 160 aaKnown RBP1.85□□□□□ -2.11
NUP88-209ENST00000574855 POLR2KP53803 58 aaKnown RBP1.85□□□□□ -2.11
NUP88-209ENST00000574855 KRTAP10-10P60014 251 aa1.85□□□□□ -2.11
NUP88-209ENST00000574855 ZNF56Q15929 161 aa1.85□□□□□ -2.11
NUP88-209ENST00000574855 PRR9Q5T870 116 aa1.85□□□□□ -2.11
NUP88-209ENST00000574855 LINC00643Q86TS7 51 aa1.85□□□□□ -2.11
NUP88-209ENST00000574855 WDR87Q6ZQQ6 2873 aa1.85□□□□□ -2.11
NUP88-209ENST00000574855 BDP1A6H8Y1 2624 aa1.85□□□□□ -2.11
NUP88-209ENST00000574855 RP1L1Q8IWN7 2480 aaPredicted RBP1.84□□□□□ -2.11
NUP88-209ENST00000574855 GVINP1Q7Z2Y8 2422 aa1.84□□□□□ -2.11
NUP88-209ENST00000574855 CEP250Q9BV73 2442 aa1.84□□□□□ -2.11
NUP88-209ENST00000574855 TRBV25-1A0A075B6N4 114 aa1.84□□□□□ -2.11
NUP88-209ENST00000574855 IGKV2-28A0A075B6P5 120 aa1.84□□□□□ -2.11
NUP88-209ENST00000574855 A0A0G2JQZ4 141 aa1.84□□□□□ -2.11
NUP88-209ENST00000574855 MYMXA0A1B0GTQ4 84 aa1.84□□□□□ -2.11
NUP88-209ENST00000574855 NUPR2A6NF83 97 aa1.84□□□□□ -2.11
NUP88-209ENST00000574855 IGKV2D-28P01615 120 aa1.84□□□□□ -2.11
NUP88-209ENST00000574855 PRB1P04280 392 aa1.84□□□□□ -2.11
NUP88-209ENST00000574855 DEFB131AP59861 70 aa1.84□□□□□ -2.11
NUP88-209ENST00000574855 TPRXLQ17RH7 258 aa1.84□□□□□ -2.11
NUP88-209ENST00000574855 SPINK13Q1W4C9 94 aa1.84□□□□□ -2.11
NUP88-209ENST00000574855 DEFB114Q30KQ6 69 aa1.84□□□□□ -2.11
NUP88-209ENST00000574855 TMEM170BQ5T4T1 132 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms