RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 A8MWP4 228 aa3.91□□□□□ -1.78
VPS53-212ENST00000572259 F2Z2F3 143 aa3.91□□□□□ -1.78
VPS53-212ENST00000572259 FAM74A4Q5TZK3 123 aa3.91□□□□□ -1.78
VPS53-212ENST00000572259 ATP6V0E2Q8NHE4 81 aa3.91□□□□□ -1.78
VPS53-212ENST00000572259 TYMSOSQ8TAI1 123 aa3.91□□□□□ -1.78
VPS53-212ENST00000572259 OSTCQ9NRP0 149 aa3.91□□□□□ -1.78
VPS53-212ENST00000572259 LY96Q9Y6Y9 160 aa3.91□□□□□ -1.78
VPS53-212ENST00000572259 TRBV24-1A0A075B6N3 115 aa3.9□□□□□ -1.79
VPS53-212ENST00000572259 TRBV10-1A0A0K0K1A3 114 aa3.9□□□□□ -1.79
VPS53-212ENST00000572259 A6NED7 52 aa3.9□□□□□ -1.79
VPS53-212ENST00000572259 ZNF727A8MUV8 499 aa3.9□□□□□ -1.79
VPS53-212ENST00000572259 CCL25O15444 150 aa3.9□□□□□ -1.79
VPS53-212ENST00000572259 SLC25A20O43772 301 aa3.9□□□□□ -1.79
VPS53-212ENST00000572259 LELP1Q5T871 98 aa3.9□□□□□ -1.79
VPS53-212ENST00000572259 MIR7-3HGQ8N6C7 128 aa3.9□□□□□ -1.79
VPS53-212ENST00000572259 SMDT1Q9H4I9 107 aa3.9□□□□□ -1.79
VPS53-212ENST00000572259 TRAPPC1Q9Y5R8 145 aa3.9□□□□□ -1.79
VPS53-212ENST00000572259 FRAS1Q86XX4 4008 aa3.9□□□□□ -1.79
VPS53-212ENST00000572259 C19orf71A6NCJ1 209 aa3.89□□□□□ -1.79
VPS53-212ENST00000572259 RTL8CO15255 209 aa3.89□□□□□ -1.79
VPS53-212ENST00000572259 HIST1H2BKO60814 126 aa3.89□□□□□ -1.79
VPS53-212ENST00000572259 HIST1H2BJP06899 126 aa3.89□□□□□ -1.79
VPS53-212ENST00000572259 TRGC1P0CF51 173 aa3.89□□□□□ -1.79
VPS53-212ENST00000572259 PEA15Q15121 130 aa3.89□□□□□ -1.79
VPS53-212ENST00000572259 ZNF56Q15929 161 aa3.89□□□□□ -1.79
VPS53-212ENST00000572259 ADM2Q7Z4H4 148 aa3.89□□□□□ -1.79
VPS53-212ENST00000572259 HIST3H2BBQ8N257 126 aa3.89□□□□□ -1.79
VPS53-212ENST00000572259 SMIM7Q9BQ49 75 aa3.89□□□□□ -1.79
VPS53-212ENST00000572259 SPANXDQ9BXN6 97 aa3.89□□□□□ -1.79
VPS53-212ENST00000572259 TRBV7-3A0A075B6L6 115 aa3.88□□□□□ -1.79
VPS53-212ENST00000572259 LECT2O14960 151 aa3.88□□□□□ -1.79
VPS53-212ENST00000572259 DNAH10OSP0CZ25 163 aa3.88□□□□□ -1.79
VPS53-212ENST00000572259 LINC01556Q5JQF7 62 aa3.88□□□□□ -1.79
VPS53-212ENST00000572259 MEIG1Q5JSS6 88 aa3.88□□□□□ -1.79
VPS53-212ENST00000572259 OR10AG1Q8NH19 301 aa3.88□□□□□ -1.79
VPS53-212ENST00000572259 HIST1H2BLQ99880 126 aa3.88□□□□□ -1.79
VPS53-212ENST00000572259 DNAH17Q9UFH2 4485 aa3.87□□□□□ -1.79
VPS53-212ENST00000572259 MUC21A0A0G2JKD1 596 aa3.87□□□□□ -1.79
VPS53-212ENST00000572259 MUC21A0A140T8X8 626 aa3.87□□□□□ -1.79
VPS53-212ENST00000572259 PSCAO43653 123 aa3.87□□□□□ -1.79
VPS53-212ENST00000572259 NPYP01303 97 aa3.87□□□□□ -1.79
VPS53-212ENST00000572259 GZMBP10144 247 aa3.87□□□□□ -1.79
VPS53-212ENST00000572259 LINC00315P59091 139 aa3.87□□□□□ -1.79
VPS53-212ENST00000572259 ELOBQ15370 118 aa3.87□□□□□ -1.79
VPS53-212ENST00000572259 LYZL1Q6UWQ5 148 aa3.87□□□□□ -1.79
VPS53-212ENST00000572259 WFDC10BQ8IUB3 73 aa3.87□□□□□ -1.79
VPS53-212ENST00000572259 SPANXA2-OT1Q8N9U9 137 aa3.87□□□□□ -1.79
VPS53-212ENST00000572259 UBE2WQ96B02 151 aa3.87□□□□□ -1.79
VPS53-212ENST00000572259 DPH3P1Q9H4G8 78 aa3.87□□□□□ -1.79
VPS53-212ENST00000572259 DNAH2Q9P225 4427 aa3.87□□□□□ -1.79
VPS53-212ENST00000572259 FAM236AA0A1B0GUQ0 79 aa3.86□□□□□ -1.79
VPS53-212ENST00000572259 FAM236BA0A1B0GV22 79 aa3.86□□□□□ -1.79
VPS53-212ENST00000572259 TMEM262E9PQX1 116 aa3.86□□□□□ -1.79
VPS53-212ENST00000572259 UQCRQO14949 82 aa3.86□□□□□ -1.79
VPS53-212ENST00000572259 MGPP08493 103 aa3.86□□□□□ -1.79
VPS53-212ENST00000572259 MIAQ16674 131 aa3.86□□□□□ -1.79
VPS53-212ENST00000572259 GTF2H5Q6ZYL4 71 aa3.86□□□□□ -1.79
VPS53-212ENST00000572259 SCGB3A1Q96QR1 104 aa3.86□□□□□ -1.79
VPS53-212ENST00000572259 NAA38Q9BRA0 125 aaKnown RBP3.86□□□□□ -1.79
VPS53-212ENST00000572259 TTTY13Q9BZ97 58 aa3.86□□□□□ -1.79
VPS53-212ENST00000572259 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.85□□□□□ -1.79
VPS53-212ENST00000572259 IBA57-AS1B1ANH7 110 aa3.85□□□□□ -1.79
VPS53-212ENST00000572259 IGHV3-30P01768 117 aa3.85□□□□□ -1.79
VPS53-212ENST00000572259 IGHV3-33P01772 117 aa3.85□□□□□ -1.79
VPS53-212ENST00000572259 IGHV3-30-5P0DP03 117 aa3.85□□□□□ -1.79
VPS53-212ENST00000572259 UBE2D3P61077 147 aa3.85□□□□□ -1.79
VPS53-212ENST00000572259 UBE2D2P62837 147 aa3.85□□□□□ -1.79
VPS53-212ENST00000572259 SMCR5Q8TEV8 140 aa3.85□□□□□ -1.79
VPS53-212ENST00000572259 TSKUQ8WUA8 353 aa3.85□□□□□ -1.79
VPS53-212ENST00000572259 PRELID3AQ96N28 172 aa3.85□□□□□ -1.79
VPS53-212ENST00000572259 CNFNQ9BYD5 112 aa3.85□□□□□ -1.79
VPS53-212ENST00000572259 TRBV25-1A0A075B6N4 114 aa3.84□□□□□ -1.79
VPS53-212ENST00000572259 TRBV6-8A0A0A6YYG3 113 aa3.84□□□□□ -1.79
VPS53-212ENST00000572259 A0A1B0GUT8 65 aa3.84□□□□□ -1.79
VPS53-212ENST00000572259 A0A1B0GVY2 172 aa3.84□□□□□ -1.79
VPS53-212ENST00000572259 C16orf90A8MZG2 172 aa3.84□□□□□ -1.79
VPS53-212ENST00000572259 DSCR10P59022 87 aa3.84□□□□□ -1.79
VPS53-212ENST00000572259 KRTAP10-6P60371 365 aaPredicted RBP3.84□□□□□ -1.79
VPS53-212ENST00000572259 Q0VG73 95 aa3.84□□□□□ -1.79
VPS53-212ENST00000572259 ADIRFQ15847 76 aa3.84□□□□□ -1.79
VPS53-212ENST00000572259 TEN1Q86WV5 123 aa3.84□□□□□ -1.79
VPS53-212ENST00000572259 MIEN1Q9BRT3 115 aa3.84□□□□□ -1.79
VPS53-212ENST00000572259 RPS10P5Q9NQ39 176 aa3.84□□□□□ -1.79
VPS53-212ENST00000572259 KIF25-AS1Q9Y6Z4 181 aa3.84□□□□□ -1.79
VPS53-212ENST00000572259 FAT2Q9NYQ8 4349 aa3.84□□□□□ -1.8
VPS53-212ENST00000572259 BIRC6Q9NR09 4857 aa3.83□□□□□ -1.8
VPS53-212ENST00000572259 EPPK1P58107 5090 aaKnown RBP3.83□□□□□ -1.8
VPS53-212ENST00000572259 IGHV1-24A0A0C4DH33 117 aa3.83□□□□□ -1.8
VPS53-212ENST00000572259 HIGD1CA8MV81 97 aa3.83□□□□□ -1.8
VPS53-212ENST00000572259 M0QY20 66 aa3.83□□□□□ -1.8
VPS53-212ENST00000572259 TCL1BO95988 128 aa3.83□□□□□ -1.8
VPS53-212ENST00000572259 PPP1R17O96001 155 aa3.83□□□□□ -1.8
VPS53-212ENST00000572259 CRPP02741 224 aa3.83□□□□□ -1.8
VPS53-212ENST00000572259 HSD52Q0P140 79 aa3.83□□□□□ -1.8
VPS53-212ENST00000572259 COL5A1-AS1Q5SY13 56 aa3.83□□□□□ -1.8
VPS53-212ENST00000572259 SDIM1Q6ZPB5 146 aa3.83□□□□□ -1.8
VPS53-212ENST00000572259 DPH3Q96FX2 82 aa3.83□□□□□ -1.8
VPS53-212ENST00000572259 PKHD1P08F94 4074 aa3.83□□□□□ -1.8
VPS53-212ENST00000572259 HECTD4Q9Y4D8 3996 aa3.82□□□□□ -1.8
VPS53-212ENST00000572259 K7ERJ3 54 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms