RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 UBE2D4Q9Y2X8 147 aa4.25□□□□□ -1.73
CHD3-213ENST00000571249 A0A1B0GV90 55 aa4.24□□□□□ -1.73
CHD3-213ENST00000571249 H7C423 109 aa4.24□□□□□ -1.73
CHD3-213ENST00000571249 NMUP48645 174 aa4.24□□□□□ -1.73
CHD3-213ENST00000571249 SEC11AP67812 179 aa4.24□□□□□ -1.73
CHD3-213ENST00000571249 HSD52Q0P140 79 aa4.24□□□□□ -1.73
CHD3-213ENST00000571249 TAL2Q16559 108 aa4.24□□□□□ -1.73
CHD3-213ENST00000571249 MPV17L2Q567V2 206 aa4.24□□□□□ -1.73
CHD3-213ENST00000571249 TMEM97Q5BJF2 176 aa4.24□□□□□ -1.73
CHD3-213ENST00000571249 LINC00242Q5T6M2 205 aa4.24□□□□□ -1.73
CHD3-213ENST00000571249 FAM19A3Q7Z5A8 133 aa4.24□□□□□ -1.73
CHD3-213ENST00000571249 PLAC8Q9NZF1 115 aa4.24□□□□□ -1.73
CHD3-213ENST00000571249 TP73-AS1Q9UF72 201 aa4.24□□□□□ -1.73
CHD3-213ENST00000571249 PSORS1C2Q9UIG4 136 aa4.24□□□□□ -1.73
CHD3-213ENST00000571249 CBY1Q9Y3M2 126 aa4.24□□□□□ -1.73
CHD3-213ENST00000571249 TRBV25-1A0A075B6N4 114 aa4.23□□□□□ -1.73
CHD3-213ENST00000571249 HINT1P49773 126 aaPredicted RBP4.23□□□□□ -1.73
CHD3-213ENST00000571249 SMAGPQ0VAQ4 97 aa4.23□□□□□ -1.73
CHD3-213ENST00000571249 NTM-AS1Q6ZSK4 140 aa4.23□□□□□ -1.73
CHD3-213ENST00000571249 SPACA4Q8TDM5 124 aa4.23□□□□□ -1.73
CHD3-213ENST00000571249 UBE2WQ96B02 151 aa4.23□□□□□ -1.73
CHD3-213ENST00000571249 OPRPNQ99935 248 aaPredicted RBP4.23□□□□□ -1.73
CHD3-213ENST00000571249 PRADC1Q9BSG0 188 aa4.23□□□□□ -1.73
CHD3-213ENST00000571249 KLK12Q9UKR0 248 aa4.23□□□□□ -1.73
CHD3-213ENST00000571249 MYMXA0A1B0GTQ4 84 aa4.22□□□□□ -1.73
CHD3-213ENST00000571249 TINCRA0A1B0GVN0 87 aa4.22□□□□□ -1.73
CHD3-213ENST00000571249 TMEM223A0PJW6 202 aa4.22□□□□□ -1.73
CHD3-213ENST00000571249 ZNF22P17026 224 aaPredicted RBP4.22□□□□□ -1.73
CHD3-213ENST00000571249 HERVK_113P61574 105 aa4.22□□□□□ -1.73
CHD3-213ENST00000571249 ORAOV1Q8WV07 137 aa4.22□□□□□ -1.73
CHD3-213ENST00000571249 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.21□□□□□ -1.74
CHD3-213ENST00000571249 IGKV2-29A2NJV5 120 aaPredicted RBP4.21□□□□□ -1.74
CHD3-213ENST00000571249 SMIM1B2RUZ4 78 aa4.21□□□□□ -1.74
CHD3-213ENST00000571249 LEPROTO15243 131 aa4.21□□□□□ -1.74
CHD3-213ENST00000571249 ZNF25P17030 456 aaPredicted RBP4.21□□□□□ -1.74
CHD3-213ENST00000571249 UBE2D1P51668 147 aa4.21□□□□□ -1.74
CHD3-213ENST00000571249 BATFQ16520 125 aa4.21□□□□□ -1.74
CHD3-213ENST00000571249 PLEKHB2Q96CS7 222 aa4.21□□□□□ -1.74
CHD3-213ENST00000571249 KRTAP4-1Q9BYQ7 146 aa4.21□□□□□ -1.74
CHD3-213ENST00000571249 TTTY13Q9BZ97 58 aa4.21□□□□□ -1.74
CHD3-213ENST00000571249 TAX1BP3O14907 124 aa4.2□□□□□ -1.74
CHD3-213ENST00000571249 TMEM170BQ5T4T1 132 aa4.2□□□□□ -1.74
CHD3-213ENST00000571249 Q6ZUT4 128 aa4.2□□□□□ -1.74
CHD3-213ENST00000571249 OR5A1Q8NGJ0 315 aa4.2□□□□□ -1.74
CHD3-213ENST00000571249 TMEM243Q9BU79 118 aa4.2□□□□□ -1.74
CHD3-213ENST00000571249 CDC42SE2Q9NRR3 84 aa4.2□□□□□ -1.74
CHD3-213ENST00000571249 SPANXB1Q9NS25 103 aaPredicted RBP4.2□□□□□ -1.74
CHD3-213ENST00000571249 IGHV3-64A0A075B6Q5 118 aa4.19□□□□□ -1.74
CHD3-213ENST00000571249 TRBV6-8A0A0A6YYG3 113 aa4.19□□□□□ -1.74
CHD3-213ENST00000571249 A0A1B0GWB2 263 aa4.19□□□□□ -1.74
CHD3-213ENST00000571249 A6NDN8 102 aa4.19□□□□□ -1.74
CHD3-213ENST00000571249 H3BRM9 83 aa4.19□□□□□ -1.74
CHD3-213ENST00000571249 J3QQQ9 107 aa4.19□□□□□ -1.74
CHD3-213ENST00000571249 TSPEAR-AS2P59090 65 aa4.19□□□□□ -1.74
CHD3-213ENST00000571249 KRTAP10-6P60371 365 aaPredicted RBP4.19□□□□□ -1.74
CHD3-213ENST00000571249 CEND1Q8N111 149 aa4.19□□□□□ -1.74
CHD3-213ENST00000571249 IGHV1-58A0A0C4DH39 117 aa4.18□□□□□ -1.74
CHD3-213ENST00000571249 A0A1B0GUV1 79 aa4.18□□□□□ -1.74
CHD3-213ENST00000571249 ZNF815PA8K554 130 aa4.18□□□□□ -1.74
CHD3-213ENST00000571249 HERVK_113P63121 156 aa4.18□□□□□ -1.74
CHD3-213ENST00000571249 V9GYY9 64 aa4.18□□□□□ -1.74
CHD3-213ENST00000571249 CCL25O15444 150 aa4.17□□□□□ -1.74
CHD3-213ENST00000571249 LGALS3P17931 250 aaKnown RBP4.17□□□□□ -1.74
CHD3-213ENST00000571249 FXYD2P54710 66 aa4.17□□□□□ -1.74
CHD3-213ENST00000571249 MT1HP80294 61 aa4.17□□□□□ -1.74
CHD3-213ENST00000571249 Q6ZRP5 223 aa4.17□□□□□ -1.74
CHD3-213ENST00000571249 TMEM101Q96IK0 257 aa4.17□□□□□ -1.74
CHD3-213ENST00000571249 PRAC1Q96KF2 57 aa4.17□□□□□ -1.74
CHD3-213ENST00000571249 UBE2L6O14933 153 aa4.16□□□□□ -1.74
CHD3-213ENST00000571249 TIMM17BO60830 172 aa4.16□□□□□ -1.74
CHD3-213ENST00000571249 SMIM13P0DJ93 91 aa4.16□□□□□ -1.74
CHD3-213ENST00000571249 CNBPP62633 177 aaKnown RBP4.16□□□□□ -1.74
CHD3-213ENST00000571249 C5orf47Q569G3 176 aa4.16□□□□□ -1.74
CHD3-213ENST00000571249 RNASE13Q5GAN3 156 aaKnown RBP4.16□□□□□ -1.74
CHD3-213ENST00000571249 AMMECR1LQ6DCA0 310 aa4.16□□□□□ -1.74
CHD3-213ENST00000571249 ENHOQ6UWT2 76 aa4.16□□□□□ -1.74
CHD3-213ENST00000571249 HIST1H4GQ99525 98 aa4.16□□□□□ -1.74
CHD3-213ENST00000571249 CDKN2A-AS1Q9UH64 79 aa4.16□□□□□ -1.74
CHD3-213ENST00000571249 IGKV2-24A0A0C4DH68 120 aa4.15□□□□□ -1.75
CHD3-213ENST00000571249 A0A0J9YXY3 114 aa4.15□□□□□ -1.75
CHD3-213ENST00000571249 NDUFA1O15239 70 aa4.15□□□□□ -1.75
CHD3-213ENST00000571249 COX6A2Q02221 97 aa4.15□□□□□ -1.75
CHD3-213ENST00000571249 SCGB1D4Q6XE38 83 aa4.15□□□□□ -1.75
CHD3-213ENST00000571249 Q6ZVH6 145 aa4.15□□□□□ -1.75
CHD3-213ENST00000571249 LITAFQ99732 161 aa4.15□□□□□ -1.75
CHD3-213ENST00000571249 CHCHD5Q9BSY4 110 aa4.15□□□□□ -1.75
CHD3-213ENST00000571249 IGLV4-60A0A075B6I1 120 aa4.14□□□□□ -1.75
CHD3-213ENST00000571249 IGHV3OR16-9A0A0B4J2B5 98 aa4.14□□□□□ -1.75
CHD3-213ENST00000571249 TMEM238C9JI98 176 aa4.14□□□□□ -1.75
CHD3-213ENST00000571249 CRPP02741 224 aa4.14□□□□□ -1.75
CHD3-213ENST00000571249 SLPIP03973 132 aa4.14□□□□□ -1.75
CHD3-213ENST00000571249 CFC1BP0CG36 223 aa4.14□□□□□ -1.75
CHD3-213ENST00000571249 KRTAP20-1Q3LI63 56 aa4.14□□□□□ -1.75
CHD3-213ENST00000571249 SPANXDQ9BXN6 97 aa4.14□□□□□ -1.75
CHD3-213ENST00000571249 SPANXCQ9NY87 97 aa4.14□□□□□ -1.75
CHD3-213ENST00000571249 NDUFA12Q9UI09 145 aa4.14□□□□□ -1.75
CHD3-213ENST00000571249 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.13□□□□□ -1.75
CHD3-213ENST00000571249 TRAV13-1A0A0B4J241 112 aa4.13□□□□□ -1.75
CHD3-213ENST00000571249 SPINK8P0C7L1 97 aa4.13□□□□□ -1.75
CHD3-213ENST00000571249 CRYGAP11844 174 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms