RNA–Protein interactions for RNA: ENST00000566703.1

RNF40-209, Transcript of ring finger protein 40, humanhuman

TSL 3

Gene RNF40, Length 808 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-209ENST00000566703 BAGE3Q86Y29 109 aa8.68□□□□□ -1.02
RNF40-209ENST00000566703 C18orf32Q8TCD1 76 aa8.68□□□□□ -1.02
RNF40-209ENST00000566703 URB1-AS1Q96HZ7 61 aa8.68□□□□□ -1.02
RNF40-209ENST00000566703 CBLN2Q8IUK8 224 aa8.67□□□□□ -1.02
RNF40-209ENST00000566703 ZNF625Q96I27 306 aaPredicted RBP8.67□□□□□ -1.02
RNF40-209ENST00000566703 RPS10P5Q9NQ39 176 aa8.67□□□□□ -1.02
RNF40-209ENST00000566703 C11orf86A6NJI1 115 aa8.66□□□□□ -1.02
RNF40-209ENST00000566703 TMEM170BQ5T4T1 132 aa8.66□□□□□ -1.02
RNF40-209ENST00000566703 SPAG11AQ6PDA7 123 aa8.66□□□□□ -1.02
RNF40-209ENST00000566703 RETNLBQ9BQ08 111 aa8.66□□□□□ -1.02
RNF40-209ENST00000566703 TRAPPC1Q9Y5R8 145 aa8.66□□□□□ -1.02
RNF40-209ENST00000566703 IGLV7-46A0A075B6I9 117 aa8.65□□□□□ -1.02
RNF40-209ENST00000566703 Q8NDZ9 215 aa8.65□□□□□ -1.02
RNF40-209ENST00000566703 CDIP1Q9H305 208 aa8.65□□□□□ -1.02
RNF40-209ENST00000566703 LINC00158P58513 81 aa8.63□□□□□ -1.03
RNF40-209ENST00000566703 MUC2Q02817 5179 aa8.62□□□□□ -1.03
RNF40-209ENST00000566703 PMCHL1Q16048 86 aa8.62□□□□□ -1.03
RNF40-209ENST00000566703 HIGD2AQ9BW72 106 aa8.62□□□□□ -1.03
RNF40-209ENST00000566703 CHTOPQ9Y3Y2 248 aaKnown RBP8.62□□□□□ -1.03
RNF40-209ENST00000566703 LCE2AQ5TA79 106 aaPredicted RBP8.61□□□□□ -1.03
RNF40-209ENST00000566703 C3orf22Q8N5N4 141 aa8.61□□□□□ -1.03
RNF40-209ENST00000566703 SPRR4Q96PI1 79 aa8.61□□□□□ -1.03
RNF40-209ENST00000566703 ZNF706Q9Y5V0 76 aaPredicted RBP8.61□□□□□ -1.03
RNF40-209ENST00000566703 TRAV12-1A0A0B4J245 112 aa8.6□□□□□ -1.03
RNF40-209ENST00000566703 TMEM223A0PJW6 202 aa8.6□□□□□ -1.03
RNF40-209ENST00000566703 LINC00587B1AMM8 73 aa8.59□□□□□ -1.03
RNF40-209ENST00000566703 C4orf48Q5BLP8 95 aa8.59□□□□□ -1.03
RNF40-209ENST00000566703 PPDPFQ9H3Y8 114 aa8.59□□□□□ -1.03
RNF40-209ENST00000566703 PRYO14603 147 aa8.58□□□□□ -1.04
RNF40-209ENST00000566703 FP248Q71RG6 208 aaPredicted RBP8.58□□□□□ -1.04
RNF40-209ENST00000566703 LINC00337Q8N6G1 96 aa8.58□□□□□ -1.04
RNF40-209ENST00000566703 SPRR1AP35321 89 aa8.57□□□□□ -1.04
RNF40-209ENST00000566703 HERV-K104P63124 156 aa8.57□□□□□ -1.04
RNF40-209ENST00000566703 S100A12P80511 92 aa8.57□□□□□ -1.04
RNF40-209ENST00000566703 IFI27L1Q96BM0 104 aa8.57□□□□□ -1.04
RNF40-209ENST00000566703 CHCHD1Q96BP2 118 aaKnown RBP8.57□□□□□ -1.04
RNF40-209ENST00000566703 KCNQ1DNQ9H478 68 aa8.57□□□□□ -1.04
RNF40-209ENST00000566703 A0A0U1RRA0 63 aa8.56□□□□□ -1.04
RNF40-209ENST00000566703 BOD1L2Q8IYS8 172 aa8.56□□□□□ -1.04
RNF40-209ENST00000566703 KRTAP9-2Q9BYQ4 174 aa8.56□□□□□ -1.04
RNF40-209ENST00000566703 SMIM13P0DJ93 91 aa8.55□□□□□ -1.04
RNF40-209ENST00000566703 SVBPQ8N300 66 aa8.55□□□□□ -1.04
RNF40-209ENST00000566703 KRTAP4-16G5E9R7 235 aaPredicted RBP8.54□□□□□ -1.04
RNF40-209ENST00000566703 SNAPINO95295 136 aa8.54□□□□□ -1.04
RNF40-209ENST00000566703 MEIG1Q5JSS6 88 aa8.54□□□□□ -1.04
RNF40-209ENST00000566703 MIR7-3HGQ8N6C7 128 aa8.54□□□□□ -1.04
RNF40-209ENST00000566703 SMCR5Q8TEV8 140 aa8.54□□□□□ -1.04
RNF40-209ENST00000566703 SPINK1P00995 79 aa8.53□□□□□ -1.04
RNF40-209ENST00000566703 APOC3P02656 99 aa8.53□□□□□ -1.04
RNF40-209ENST00000566703 LINC00518Q8N0U6 118 aa8.53□□□□□ -1.04
RNF40-209ENST00000566703 ETDCA0A1B0GVM5 59 aa8.52□□□□□ -1.05
RNF40-209ENST00000566703 MAP1LC3CQ9BXW4 147 aa8.52□□□□□ -1.05
RNF40-209ENST00000566703 MYMXA0A1B0GTQ4 84 aa8.51□□□□□ -1.05
RNF40-209ENST00000566703 LINC00483Q53H64 154 aa8.51□□□□□ -1.05
RNF40-209ENST00000566703 Q8NBF4 154 aa8.51□□□□□ -1.05
RNF40-209ENST00000566703 NDUFA12Q9UI09 145 aa8.51□□□□□ -1.05
RNF40-209ENST00000566703 LOC107984156A0A0G2JMH3 177 aa8.5□□□□□ -1.05
RNF40-209ENST00000566703 NCR3O14931 201 aa8.5□□□□□ -1.05
RNF40-209ENST00000566703 ARL17AQ8IVW1 177 aa8.5□□□□□ -1.05
RNF40-209ENST00000566703 TRBV10-3A0A0K0K1G6 114 aa8.49□□□□□ -1.05
RNF40-209ENST00000566703 DAND5Q8N907 189 aa8.49□□□□□ -1.05
RNF40-209ENST00000566703 YPEL4Q96NS1 127 aa8.49□□□□□ -1.05
RNF40-209ENST00000566703 HSBP1O75506 76 aa8.48□□□□□ -1.05
RNF40-209ENST00000566703 KRTAP13-3Q3SY46 172 aa8.48□□□□□ -1.05
RNF40-209ENST00000566703 SSBP3-AS1Q7Z2R9 100 aa8.48□□□□□ -1.05
RNF40-209ENST00000566703 TRBV10-2A0A0K0K1G8 114 aa8.47□□□□□ -1.05
RNF40-209ENST00000566703 B5MCH6 92 aa8.47□□□□□ -1.05
RNF40-209ENST00000566703 RPS29P62273 56 aaKnown RBP8.47□□□□□ -1.05
RNF40-209ENST00000566703 MUC17Q685J3 4493 aa8.46□□□□□ -1.05
RNF40-209ENST00000566703 ASB16-AS1Q495Z4 193 aa8.46□□□□□ -1.06
RNF40-209ENST00000566703 FAT4Q6V0I7 4981 aa8.46□□□□□ -1.06
RNF40-209ENST00000566703 GAGE2AQ6NT46 116 aa8.45□□□□□ -1.06
RNF40-209ENST00000566703 FAM19A2Q8N3H0 131 aa8.45□□□□□ -1.06
RNF40-209ENST00000566703 LEPROTO15243 131 aa8.44□□□□□ -1.06
RNF40-209ENST00000566703 DDTP30046 118 aa8.44□□□□□ -1.06
RNF40-209ENST00000566703 ERC2-IT1O76042 136 aa8.42□□□□□ -1.06
RNF40-209ENST00000566703 LEPROTL1O95214 131 aa8.42□□□□□ -1.06
RNF40-209ENST00000566703 NDUFC2O95298 119 aa8.42□□□□□ -1.06
RNF40-209ENST00000566703 PLNP26678 52 aa8.42□□□□□ -1.06
RNF40-209ENST00000566703 NMUP48645 174 aa8.42□□□□□ -1.06
RNF40-209ENST00000566703 SEC61BP60468 96 aaKnown RBP8.42□□□□□ -1.06
RNF40-209ENST00000566703 J3QQQ9 107 aa8.41□□□□□ -1.06
RNF40-209ENST00000566703 SMIM6P0DI80 62 aa8.41□□□□□ -1.06
RNF40-209ENST00000566703 TSPEAR-AS2P59090 65 aa8.41□□□□□ -1.06
RNF40-209ENST00000566703 MOBPQ13875 183 aa8.41□□□□□ -1.06
RNF40-209ENST00000566703 Q6ZRX8 168 aa8.41□□□□□ -1.06
RNF40-209ENST00000566703 Q8N377 158 aa8.41□□□□□ -1.06
RNF40-209ENST00000566703 MIEN1Q9BRT3 115 aa8.41□□□□□ -1.06
RNF40-209ENST00000566703 SPANXB1Q9NS25 103 aaPredicted RBP8.41□□□□□ -1.06
RNF40-209ENST00000566703 H0Y8G0 127 aa8.4□□□□□ -1.06
RNF40-209ENST00000566703 SLC25A20O43772 301 aa8.4□□□□□ -1.06
RNF40-209ENST00000566703 HERVK_113P61574 105 aa8.4□□□□□ -1.06
RNF40-209ENST00000566703 JOSD1Q15040 202 aaPredicted RBP8.4□□□□□ -1.06
RNF40-209ENST00000566703 Q9BRP9 147 aa8.4□□□□□ -1.06
RNF40-209ENST00000566703 IGLV9-49A0A0B4J1Y8 123 aa8.39□□□□□ -1.07
RNF40-209ENST00000566703 IGLV6-57P01721 117 aa8.39□□□□□ -1.07
RNF40-209ENST00000566703 HSPB8Q9UJY1 196 aa8.39□□□□□ -1.07
RNF40-209ENST00000566703 C5orf52A6NGY3 159 aa8.38□□□□□ -1.07
RNF40-209ENST00000566703 DPM2O94777 84 aa8.38□□□□□ -1.07
RNF40-209ENST00000566703 S100A7L2Q5SY68 101 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms