RNA–Protein interactions for RNA: ENST00000564540.5

UBR1-205, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 735 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-205ENST00000564540 C18orf32Q8TCD1 76 aa0.47□□□□□ -2.33
UBR1-205ENST00000564540 GAFA1Q96PS6 74 aa0.47□□□□□ -2.33
UBR1-205ENST00000564540 LRRC7Q96NW7 1537 aa0.47□□□□□ -2.33
UBR1-205ENST00000564540 KIF20BQ96Q89 1820 aa0.47□□□□□ -2.33
UBR1-205ENST00000564540 C2CD3Q4AC94 2353 aa0.47□□□□□ -2.33
UBR1-205ENST00000564540 CHD9Q3L8U1 2897 aa0.47□□□□□ -2.33
UBR1-205ENST00000564540 PHGR1C9JFL3 82 aa0.46□□□□□ -2.34
UBR1-205ENST00000564540 COX7BP24311 80 aa0.46□□□□□ -2.34
UBR1-205ENST00000564540 NKTRP30414 1462 aaKnown RBP0.46□□□□□ -2.34
UBR1-205ENST00000564540 CCDC141Q6ZP82 1450 aa0.46□□□□□ -2.34
UBR1-205ENST00000564540 USP32Q8NFA0 1604 aa0.46□□□□□ -2.34
UBR1-205ENST00000564540 ZNF292O60281 2723 aa0.45□□□□□ -2.34
UBR1-205ENST00000564540 ABCC1P33527 1531 aa0.45□□□□□ -2.34
UBR1-205ENST00000564540 MAP3K1Q13233 1512 aa0.45□□□□□ -2.34
UBR1-205ENST00000564540 F8P00451 2351 aa0.45□□□□□ -2.34
UBR1-205ENST00000564540 SPTY2D1-AS1A0A0U1RR47 76 aa0.45□□□□□ -2.34
UBR1-205ENST00000564540 CPSF4LA6NMK7 179 aaKnown RBP0.45□□□□□ -2.34
UBR1-205ENST00000564540 CFDP00746 253 aaPredicted RBP0.45□□□□□ -2.34
UBR1-205ENST00000564540 NCOA2Q15596 1464 aa0.45□□□□□ -2.34
UBR1-205ENST00000564540 URB1O60287 2271 aaKnown RBP0.45□□□□□ -2.34
UBR1-205ENST00000564540 SPTBN2O15020 2390 aa0.45□□□□□ -2.34
UBR1-205ENST00000564540 CFAP74Q9C0B2 1584 aa0.45□□□□□ -2.34
UBR1-205ENST00000564540 PPRC1Q5VV67 1664 aaKnown RBP0.44□□□□□ -2.34
UBR1-205ENST00000564540 PIEZO2Q9H5I5 2752 aa0.44□□□□□ -2.34
UBR1-205ENST00000564540 TPRP12270 2363 aaKnown RBP0.44□□□□□ -2.34
UBR1-205ENST00000564540 I3L3M4 83 aa0.44□□□□□ -2.34
UBR1-205ENST00000564540 IFI6P09912 130 aa0.44□□□□□ -2.34
UBR1-205ENST00000564540 COX8AP10176 69 aa0.44□□□□□ -2.34
UBR1-205ENST00000564540 KRTAP21-1Q3LI58 79 aa0.44□□□□□ -2.34
UBR1-205ENST00000564540 WFDC9Q8NEX5 89 aa0.44□□□□□ -2.34
UBR1-205ENST00000564540 ANKARQ7Z5J8 1434 aa0.44□□□□□ -2.34
UBR1-205ENST00000564540 DOPEY2Q9Y3R5 2298 aa0.44□□□□□ -2.34
UBR1-205ENST00000564540 CEP170BQ9Y4F5 1589 aaPredicted RBP0.44□□□□□ -2.34
UBR1-205ENST00000564540 UBR3Q6ZT12 1888 aa0.44□□□□□ -2.34
UBR1-205ENST00000564540 URB2Q14146 1524 aaKnown RBP0.43□□□□□ -2.34
UBR1-205ENST00000564540 TSC2P49815 1807 aa0.43□□□□□ -2.34
UBR1-205ENST00000564540 PIK3C2BO00750 1634 aa0.43□□□□□ -2.34
UBR1-205ENST00000564540 MRPL34Q9BQ48 92 aaKnown RBP0.43□□□□□ -2.34
UBR1-205ENST00000564540 QSER1Q2KHR3 1735 aa0.43□□□□□ -2.34
UBR1-205ENST00000564540 CACNA1EQ15878 2313 aa0.43□□□□□ -2.34
UBR1-205ENST00000564540 PIEZO1Q92508 2521 aa0.42□□□□□ -2.34
UBR1-205ENST00000564540 LTN1O94822 1766 aa0.42□□□□□ -2.34
UBR1-205ENST00000564540 LRRIQ1Q96JM4 1722 aa0.42□□□□□ -2.34
UBR1-205ENST00000564540 ABCA8O94911 1581 aa0.42□□□□□ -2.34
UBR1-205ENST00000564540 NDUFB1O75438 58 aa0.42□□□□□ -2.34
UBR1-205ENST00000564540 SPINK1P00995 79 aa0.42□□□□□ -2.34
UBR1-205ENST00000564540 SMIM13P0DJ93 91 aa0.42□□□□□ -2.34
UBR1-205ENST00000564540 DEFB109BQ30KR1 87 aa0.42□□□□□ -2.34
UBR1-205ENST00000564540 PTPN23Q9H3S7 1636 aa0.42□□□□□ -2.34
UBR1-205ENST00000564540 POLR1AO95602 1720 aaPredicted RBP0.41□□□□□ -2.34
UBR1-205ENST00000564540 A0A087WXM4 84 aa0.41□□□□□ -2.34
UBR1-205ENST00000564540 KLK9Q2XQG4 91 aa0.41□□□□□ -2.34
UBR1-205ENST00000564540 ATP5EP2Q5VTU8 51 aa0.41□□□□□ -2.34
UBR1-205ENST00000564540 DEFB105AQ8NG35 78 aa0.41□□□□□ -2.34
UBR1-205ENST00000564540 APLNQ9ULZ1 77 aa0.41□□□□□ -2.34
UBR1-205ENST00000564540 COL14A1Q05707 1796 aaKnown RBP0.41□□□□□ -2.34
UBR1-205ENST00000564540 CSMD3Q7Z407 3707 aa0.4□□□□□ -2.34
UBR1-205ENST00000564540 RGPD8O14715 1765 aaPredicted RBP0.4□□□□□ -2.35
UBR1-205ENST00000564540 RGPD5Q99666 1765 aa0.4□□□□□ -2.35
UBR1-205ENST00000564540 PTPRQQ9UMZ3 2332 aa0.4□□□□□ -2.35
UBR1-205ENST00000564540 UMAD1C9J7I0 102 aa0.4□□□□□ -2.35
UBR1-205ENST00000564540 IFI27P40305 119 aaPredicted RBP0.4□□□□□ -2.35
UBR1-205ENST00000564540 SMCO4Q9NRQ5 59 aa0.4□□□□□ -2.35
UBR1-205ENST00000564540 DOT1LQ8TEK3 1739 aa0.4□□□□□ -2.35
UBR1-205ENST00000564540 MUC5BQ9HC84 5762 aaPredicted RBP0.4□□□□□ -2.35
UBR1-205ENST00000564540 PTPRZ1P23471 2315 aaPredicted RBP0.39□□□□□ -2.35
UBR1-205ENST00000564540 HMGA1P17096 107 aaKnown RBP0.39□□□□□ -2.35
UBR1-205ENST00000564540 H1FX-AS1Q4G0G2 97 aa0.39□□□□□ -2.35
UBR1-205ENST00000564540 LELP1Q5T871 98 aa0.39□□□□□ -2.35
UBR1-205ENST00000564540 FXYD6Q9H0Q3 95 aa0.39□□□□□ -2.35
UBR1-205ENST00000564540 CCDC88BA6NC98 1476 aa0.39□□□□□ -2.35
UBR1-205ENST00000564540 CLIP1P30622 1438 aa0.38□□□□□ -2.35
UBR1-205ENST00000564540 MAGI3Q5TCQ9 1506 aa0.38□□□□□ -2.35
UBR1-205ENST00000564540 ARFGEF2Q9Y6D5 1785 aa0.38□□□□□ -2.35
UBR1-205ENST00000564540 CD163L1Q9NR16 1453 aa0.38□□□□□ -2.35
UBR1-205ENST00000564540 LCE6AA0A183 80 aa0.38□□□□□ -2.35
UBR1-205ENST00000564540 U3KQA8 63 aa0.38□□□□□ -2.35
UBR1-205ENST00000564540 MDN1Q9NU22 5596 aa0.38□□□□□ -2.35
UBR1-205ENST00000564540 BCORQ6W2J9 1755 aa0.37□□□□□ -2.35
UBR1-205ENST00000564540 OTOGQ6ZRI0 2925 aa0.37□□□□□ -2.35
UBR1-205ENST00000564540 CCL22O00626 93 aa0.37□□□□□ -2.35
UBR1-205ENST00000564540 RPL38P63173 70 aaKnown RBP0.37□□□□□ -2.35
UBR1-205ENST00000564540 DEFA5Q01523 94 aa0.37□□□□□ -2.35
UBR1-205ENST00000564540 NREPQ16612 68 aa0.37□□□□□ -2.35
UBR1-205ENST00000564540 MYO5CQ9NQX4 1742 aa0.37□□□□□ -2.35
UBR1-205ENST00000564540 UGGT2Q9NYU1 1516 aa0.37□□□□□ -2.35
UBR1-205ENST00000564540 SCN11AQ9UI33 1791 aa0.37□□□□□ -2.35
UBR1-205ENST00000564540 IQGAP3Q86VI3 1631 aa0.36□□□□□ -2.35
UBR1-205ENST00000564540 PDCD5O14737 125 aa0.36□□□□□ -2.35
UBR1-205ENST00000564540 SPINK4O60575 86 aa0.36□□□□□ -2.35
UBR1-205ENST00000564540 SYNE1Q8NF91 8797 aaKnown RBP0.36□□□□□ -2.35
UBR1-205ENST00000564540 SPTBN1Q01082 2364 aaKnown RBP0.35□□□□□ -2.35
UBR1-205ENST00000564540 PREX1Q8TCU6 1659 aa0.35□□□□□ -2.35
UBR1-205ENST00000564540 HEPN1Q6WQI6 88 aa0.35□□□□□ -2.35
UBR1-205ENST00000564540 TENM4Q6N022 2769 aa0.35□□□□□ -2.35
UBR1-205ENST00000564540 PKDREJQ9NTG1 2253 aa0.34□□□□□ -2.35
UBR1-205ENST00000564540 NWD1Q149M9 1564 aa0.34□□□□□ -2.36
UBR1-205ENST00000564540 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.34□□□□□ -2.36
UBR1-205ENST00000564540 VWFP04275 2813 aa0.34□□□□□ -2.36
UBR1-205ENST00000564540 MUC5ACP98088 5654 aa0.34□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms