RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 SPAG11AQ6PDA7 123 aa2.11□□□□□ -2.07
VPS35-203ENST00000562420 LINC00575Q6W349 94 aa2.11□□□□□ -2.07
VPS35-203ENST00000562420 Q8N9W7 124 aa2.11□□□□□ -2.07
VPS35-203ENST00000562420 RPL39LQ96EH5 51 aaKnown RBP2.11□□□□□ -2.07
VPS35-203ENST00000562420 FAM215AQ9Y5M1 114 aa2.11□□□□□ -2.07
VPS35-203ENST00000562420 ZDBF2Q9HCK1 2354 aa2.11□□□□□ -2.07
VPS35-203ENST00000562420 DMDP11532 3685 aa2.1□□□□□ -2.07
VPS35-203ENST00000562420 IGKV2-40A0A087WW87 121 aaPredicted RBP2.1□□□□□ -2.07
VPS35-203ENST00000562420 DEFB108AA8MXU0 73 aa2.1□□□□□ -2.07
VPS35-203ENST00000562420 IGKV2D-40P01614 121 aaPredicted RBP2.1□□□□□ -2.07
VPS35-203ENST00000562420 IGLV2-23P01705 113 aa2.1□□□□□ -2.07
VPS35-203ENST00000562420 STATHP02808 62 aa2.1□□□□□ -2.07
VPS35-203ENST00000562420 IGKV4-1P06312 121 aa2.1□□□□□ -2.07
VPS35-203ENST00000562420 MGPP08493 103 aa2.1□□□□□ -2.07
VPS35-203ENST00000562420 RPL39P62891 51 aaKnown RBP2.1□□□□□ -2.07
VPS35-203ENST00000562420 DEFB133Q30KQ1 61 aa2.1□□□□□ -2.07
VPS35-203ENST00000562420 C1orf134Q5TEV5 83 aa2.1□□□□□ -2.07
VPS35-203ENST00000562420 SPATA8Q6RVD6 105 aa2.1□□□□□ -2.07
VPS35-203ENST00000562420 Q8NAQ8 132 aa2.1□□□□□ -2.07
VPS35-203ENST00000562420 GAFA1Q96PS6 74 aa2.1□□□□□ -2.07
VPS35-203ENST00000562420 PRUNE2Q8WUY3 3088 aa2.1□□□□□ -2.07
VPS35-203ENST00000562420 TET2Q6N021 2002 aaPredicted RBP2.1□□□□□ -2.07
VPS35-203ENST00000562420 TTC28Q96AY4 2481 aa2.1□□□□□ -2.07
VPS35-203ENST00000562420 EYSQ5T1H1 3165 aa2.1□□□□□ -2.07
VPS35-203ENST00000562420 ARHGAP32A7KAX9 2087 aa2.1□□□□□ -2.07
VPS35-203ENST00000562420 DSCAML1Q8TD84 2053 aa2.1□□□□□ -2.07
VPS35-203ENST00000562420 ESPL1Q14674 2120 aa2.09□□□□□ -2.07
VPS35-203ENST00000562420 CACNA1HO95180 2353 aa2.09□□□□□ -2.07
VPS35-203ENST00000562420 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.09□□□□□ -2.07
VPS35-203ENST00000562420 IGKV2-28A0A075B6P5 120 aa2.09□□□□□ -2.07
VPS35-203ENST00000562420 H0Y9P7 68 aa2.09□□□□□ -2.07
VPS35-203ENST00000562420 UQCR11O14957 56 aa2.09□□□□□ -2.07
VPS35-203ENST00000562420 IGKV2D-28P01615 120 aa2.09□□□□□ -2.07
VPS35-203ENST00000562420 C1orf137Q5JT78 98 aa2.09□□□□□ -2.07
VPS35-203ENST00000562420 Q6ZTI0 123 aa2.09□□□□□ -2.07
VPS35-203ENST00000562420 Q8NDZ9 215 aa2.09□□□□□ -2.07
VPS35-203ENST00000562420 PATE1Q8WXA2 126 aa2.09□□□□□ -2.07
VPS35-203ENST00000562420 USP34Q70CQ2 3546 aa2.09□□□□□ -2.08
VPS35-203ENST00000562420 KNL1Q8NG31 2342 aa2.08□□□□□ -2.08
VPS35-203ENST00000562420 SEC16AO15027 2179 aa2.08□□□□□ -2.08
VPS35-203ENST00000562420 REV3LO60673 3130 aa2.08□□□□□ -2.08
VPS35-203ENST00000562420 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.08□□□□□ -2.08
VPS35-203ENST00000562420 DEFB131BA0A096LNP1 70 aa2.08□□□□□ -2.08
VPS35-203ENST00000562420 TRGV4A0A0C4DH28 118 aa2.08□□□□□ -2.08
VPS35-203ENST00000562420 IGLV7-43P04211 117 aa2.08□□□□□ -2.08
VPS35-203ENST00000562420 RNASE3P12724 160 aaKnown RBP2.08□□□□□ -2.08
VPS35-203ENST00000562420 KRTAP10-1P60331 282 aa2.08□□□□□ -2.08
VPS35-203ENST00000562420 MIR22HGQ0VDD5 57 aa2.08□□□□□ -2.08
VPS35-203ENST00000562420 DEFB110Q30KQ9 67 aa2.08□□□□□ -2.08
VPS35-203ENST00000562420 DMAC1Q96GE9 116 aa2.08□□□□□ -2.08
VPS35-203ENST00000562420 CDKN2A-AS1Q9UH64 79 aa2.08□□□□□ -2.08
VPS35-203ENST00000562420 U3KQA8 63 aa2.08□□□□□ -2.08
VPS35-203ENST00000562420 BDP1A6H8Y1 2624 aa2.08□□□□□ -2.08
VPS35-203ENST00000562420 PLXNB1O43157 2135 aa2.08□□□□□ -2.08
VPS35-203ENST00000562420 MED13Q9UHV7 2174 aa2.08□□□□□ -2.08
VPS35-203ENST00000562420 TRIOO75962 3097 aa2.07□□□□□ -2.08
VPS35-203ENST00000562420 COL6A3P12111 3177 aa2.07□□□□□ -2.08
VPS35-203ENST00000562420 LRCOL1A6NCL2 159 aa2.07□□□□□ -2.08
VPS35-203ENST00000562420 CCL18P55774 89 aa2.07□□□□□ -2.08
VPS35-203ENST00000562420 LINC00158P58513 81 aa2.07□□□□□ -2.08
VPS35-203ENST00000562420 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.07□□□□□ -2.08
VPS35-203ENST00000562420 ZGRF1Q86YA3 2104 aa2.07□□□□□ -2.08
VPS35-203ENST00000562420 TMEM105Q8N8V8 129 aa2.07□□□□□ -2.08
VPS35-203ENST00000562420 SPRR4Q96PI1 79 aa2.07□□□□□ -2.08
VPS35-203ENST00000562420 TP53AIP1Q9HCN2 124 aa2.07□□□□□ -2.08
VPS35-203ENST00000562420 TECTAO75443 2155 aa2.07□□□□□ -2.08
VPS35-203ENST00000562420 TNCP24821 2201 aa2.07□□□□□ -2.08
VPS35-203ENST00000562420 WDFY3Q8IZQ1 3526 aa2.07□□□□□ -2.08
VPS35-203ENST00000562420 PI4KAP42356 2102 aa2.06□□□□□ -2.08
VPS35-203ENST00000562420 ASCC3Q8N3C0 2202 aaKnown RBP2.06□□□□□ -2.08
VPS35-203ENST00000562420 IGLV4-60A0A075B6I1 120 aa2.06□□□□□ -2.08
VPS35-203ENST00000562420 A0A1W2PNM2 257 aa2.06□□□□□ -2.08
VPS35-203ENST00000562420 LCE1CQ5T751 118 aa2.06□□□□□ -2.08
VPS35-203ENST00000562420 LCE1BQ5T7P3 118 aa2.06□□□□□ -2.08
VPS35-203ENST00000562420 COA5Q86WW8 74 aa2.06□□□□□ -2.08
VPS35-203ENST00000562420 DEFB119Q8N690 84 aa2.06□□□□□ -2.08
VPS35-203ENST00000562420 C9orf163Q8N9P6 203 aa2.06□□□□□ -2.08
VPS35-203ENST00000562420 Q8TAT8 98 aa2.06□□□□□ -2.08
VPS35-203ENST00000562420 KNTC1P50748 2209 aa2.06□□□□□ -2.08
VPS35-203ENST00000562420 AHCTF1Q8WYP5 2266 aa2.05□□□□□ -2.08
VPS35-203ENST00000562420 IGLV5-48A0A075B6I7 105 aa2.05□□□□□ -2.08
VPS35-203ENST00000562420 A0A1B0GVX0 72 aa2.05□□□□□ -2.08
VPS35-203ENST00000562420 A8MWP4 228 aa2.05□□□□□ -2.08
VPS35-203ENST00000562420 CMC4P56277 68 aaPredicted RBP2.05□□□□□ -2.08
VPS35-203ENST00000562420 DEFB112Q30KQ8 113 aa2.05□□□□□ -2.08
VPS35-203ENST00000562420 KAAG1Q9UBP8 84 aa2.05□□□□□ -2.08
VPS35-203ENST00000562420 MUC4Q99102 2169 aa2.05□□□□□ -2.08
VPS35-203ENST00000562420 OTOGLQ3ZCN5 2332 aa2.05□□□□□ -2.08
VPS35-203ENST00000562420 RP1P56715 2156 aa2.04□□□□□ -2.08
VPS35-203ENST00000562420 GPR179Q6PRD1 2367 aa2.04□□□□□ -2.08
VPS35-203ENST00000562420 Q8IZM0 81 aa2.04□□□□□ -2.08
VPS35-203ENST00000562420 ASXL3Q9C0F0 2248 aa2.04□□□□□ -2.08
VPS35-203ENST00000562420 KLK12Q9UKR0 248 aa2.04□□□□□ -2.08
VPS35-203ENST00000562420 LAMA1P25391 3075 aa2.04□□□□□ -2.08
VPS35-203ENST00000562420 PIEZO1Q92508 2521 aa2.03□□□□□ -2.08
VPS35-203ENST00000562420 VPS13AQ96RL7 3174 aa2.03□□□□□ -2.08
VPS35-203ENST00000562420 A0A096LNT2 108 aa2.03□□□□□ -2.08
VPS35-203ENST00000562420 CLPSL1A2RUU4 121 aa2.03□□□□□ -2.08
VPS35-203ENST00000562420 B4DSR2 109 aa2.03□□□□□ -2.08
VPS35-203ENST00000562420 KRTAP25-1Q3LHN0 102 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms