RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 PRR3P79522 188 aaKnown RBP7.84□□□□□ -1.15
CUX1-218ENST00000560541 PDZD2O15018 2839 aa7.83□□□□□ -1.16
CUX1-218ENST00000560541 TRAV10A0A0B4J240 114 aa7.82□□□□□ -1.16
CUX1-218ENST00000560541 ZNF561-AS1K7EIQ3 104 aa7.82□□□□□ -1.16
CUX1-218ENST00000560541 CMC4P56277 68 aaPredicted RBP7.82□□□□□ -1.16
CUX1-218ENST00000560541 Q8N3U1 123 aa7.82□□□□□ -1.16
CUX1-218ENST00000560541 FASNP49327 2511 aaKnown RBP7.81□□□□□ -1.16
CUX1-218ENST00000560541 IGLV10-54A0A075B6I4 117 aa7.81□□□□□ -1.16
CUX1-218ENST00000560541 DEFB4AO15263 64 aa7.81□□□□□ -1.16
CUX1-218ENST00000560541 RNASE1P07998 156 aaKnown RBP7.81□□□□□ -1.16
CUX1-218ENST00000560541 HELZ2Q9BYK8 2649 aaKnown RBP7.8□□□□□ -1.16
CUX1-218ENST00000560541 TRAV7A0A075B6U4 112 aa7.8□□□□□ -1.16
CUX1-218ENST00000560541 H0YGX0 51 aa7.8□□□□□ -1.16
CUX1-218ENST00000560541 DAD1P61803 113 aa7.8□□□□□ -1.16
CUX1-218ENST00000560541 C4orf48Q5BLP8 95 aa7.79□□□□□ -1.16
CUX1-218ENST00000560541 CD164Q04900 197 aa7.79□□□□□ -1.16
CUX1-218ENST00000560541 KRTAP1-1Q07627 177 aa7.79□□□□□ -1.16
CUX1-218ENST00000560541 C9orf116Q5BN46 136 aaPredicted RBP7.79□□□□□ -1.16
CUX1-218ENST00000560541 LINC00269Q8N2A0 174 aa7.78□□□□□ -1.16
CUX1-218ENST00000560541 UNC79Q9P2D8 2635 aa7.78□□□□□ -1.16
CUX1-218ENST00000560541 MRPL55Q7Z7F7 128 aaKnown RBP7.77□□□□□ -1.16
CUX1-218ENST00000560541 TENM1Q9UKZ4 2725 aa7.77□□□□□ -1.17
CUX1-218ENST00000560541 HAMPP81172 84 aa7.76□□□□□ -1.17
CUX1-218ENST00000560541 KLKP1Q107X0 134 aa7.76□□□□□ -1.17
CUX1-218ENST00000560541 SPATA3Q8NHX4 192 aa7.76□□□□□ -1.17
CUX1-218ENST00000560541 SMR3AQ99954 134 aa7.76□□□□□ -1.17
CUX1-218ENST00000560541 Q8IZM0 81 aa7.76□□□□□ -1.17
CUX1-218ENST00000560541 C6orf223Q8N319 242 aa7.76□□□□□ -1.17
CUX1-218ENST00000560541 ORMDL1Q9P0S3 153 aa7.76□□□□□ -1.17
CUX1-218ENST00000560541 X6R8D5 127 aa7.76□□□□□ -1.17
CUX1-218ENST00000560541 PRO0255Q9UI72 69 aa7.75□□□□□ -1.17
CUX1-218ENST00000560541 TRRAPQ9Y4A5 3859 aa7.75□□□□□ -1.17
CUX1-218ENST00000560541 ANGP03950 147 aaKnown RBP7.75□□□□□ -1.17
CUX1-218ENST00000560541 KRTAP10-3P60369 221 aa7.75□□□□□ -1.17
CUX1-218ENST00000560541 PSPHP1O15172 72 aa7.75□□□□□ -1.17
CUX1-218ENST00000560541 NANOS2P60321 138 aaKnown RBP7.75□□□□□ -1.17
CUX1-218ENST00000560541 C11orf45Q8TAV5 145 aa7.75□□□□□ -1.17
CUX1-218ENST00000560541 LY6G6DO95868 133 aa7.74□□□□□ -1.17
CUX1-218ENST00000560541 DEFB135Q30KP9 77 aa7.74□□□□□ -1.17
CUX1-218ENST00000560541 TM2D3Q9BRN9 247 aa7.74□□□□□ -1.17
CUX1-218ENST00000560541 HECTD1Q9ULT8 2610 aa7.74□□□□□ -1.17
CUX1-218ENST00000560541 A0A1B0GUV1 79 aa7.74□□□□□ -1.17
CUX1-218ENST00000560541 CHCHD10Q8WYQ3 142 aaPredicted RBP7.74□□□□□ -1.17
CUX1-218ENST00000560541 OBSCN-AS1Q96MR7 158 aa7.74□□□□□ -1.17
CUX1-218ENST00000560541 Q8NDZ9 215 aa7.73□□□□□ -1.17
CUX1-218ENST00000560541 UBL5Q9BZL1 73 aa7.73□□□□□ -1.17
CUX1-218ENST00000560541 MIFP14174 115 aa7.73□□□□□ -1.17
CUX1-218ENST00000560541 ATRQ13535 2644 aa7.73□□□□□ -1.17
CUX1-218ENST00000560541 SCXQ7RTU7 201 aa7.73□□□□□ -1.17
CUX1-218ENST00000560541 LINC00612Q8N6U2 182 aa7.73□□□□□ -1.17
CUX1-218ENST00000560541 A8MU10 97 aa7.72□□□□□ -1.17
CUX1-218ENST00000560541 KIAA0087Q14695 138 aa7.72□□□□□ -1.17
CUX1-218ENST00000560541 PRR15Q8IV56 129 aa7.72□□□□□ -1.17
CUX1-218ENST00000560541 PRB2P02812 416 aaPredicted RBP7.72□□□□□ -1.17
CUX1-218ENST00000560541 REG3AQ06141 175 aa7.72□□□□□ -1.17
CUX1-218ENST00000560541 HTN3P15516 51 aa7.71□□□□□ -1.17
CUX1-218ENST00000560541 Q8N814 137 aa7.71□□□□□ -1.17
CUX1-218ENST00000560541 ESRGQ1W209 222 aa7.71□□□□□ -1.18
CUX1-218ENST00000560541 C6orf99Q4VX62 202 aa7.71□□□□□ -1.18
CUX1-218ENST00000560541 CD164L2Q6UWJ8 174 aa7.71□□□□□ -1.18
CUX1-218ENST00000560541 Q6ZRU5 148 aa7.71□□□□□ -1.18
CUX1-218ENST00000560541 C10orf25Q5T742 122 aa7.7□□□□□ -1.18
CUX1-218ENST00000560541 RBM12B-AS1Q9P1G2 102 aa7.7□□□□□ -1.18
CUX1-218ENST00000560541 OTOGQ6ZRI0 2925 aa7.69□□□□□ -1.18
CUX1-218ENST00000560541 HIVEP1P15822 2718 aa7.69□□□□□ -1.18
CUX1-218ENST00000560541 ATP5EP2Q5VTU8 51 aa7.69□□□□□ -1.18
CUX1-218ENST00000560541 UNQ6190/PRO20217Q6UXQ8 127 aa7.69□□□□□ -1.18
CUX1-218ENST00000560541 CELA1Q9UNI1 258 aa7.69□□□□□ -1.18
CUX1-218ENST00000560541 IGHV4-28A0A0C4DH34 117 aa7.68□□□□□ -1.18
CUX1-218ENST00000560541 TEP1Q99973 2627 aaKnown RBP7.67□□□□□ -1.18
CUX1-218ENST00000560541 FUSP35637 526 aaKnown RBP eCLIP7.67□□□□□ -1.18
CUX1-218ENST00000560541 TMEM256-PLSCR3K7ERE1 68 aa7.66□□□□□ -1.18
CUX1-218ENST00000560541 M0R2N4 97 aa7.66□□□□□ -1.18
CUX1-218ENST00000560541 SPAG11BQ08648 103 aa7.66□□□□□ -1.18
CUX1-218ENST00000560541 TMEM254Q8TBM7 123 aa7.66□□□□□ -1.18
CUX1-218ENST00000560541 LINC00167Q96N53 147 aa7.66□□□□□ -1.18
CUX1-218ENST00000560541 LYRM9A8MSI8 78 aa7.65□□□□□ -1.18
CUX1-218ENST00000560541 COX17Q14061 63 aa7.65□□□□□ -1.18
CUX1-218ENST00000560541 KLK12Q9UKR0 248 aa7.65□□□□□ -1.18
CUX1-218ENST00000560541 JMJD7-PLA2G4BH0Y9G9 81 aa7.65□□□□□ -1.18
CUX1-218ENST00000560541 NDUFC1O43677 76 aa7.65□□□□□ -1.18
CUX1-218ENST00000560541 LINC01547P58512 204 aaPredicted RBP7.65□□□□□ -1.19
CUX1-218ENST00000560541 PKD1L1Q8TDX9 2849 aa7.64□□□□□ -1.19
CUX1-218ENST00000560541 CYSRT1A8MQ03 144 aa7.64□□□□□ -1.19
CUX1-218ENST00000560541 ATP5EP56381 51 aaPredicted RBP7.64□□□□□ -1.19
CUX1-218ENST00000560541 NSD1Q96L73 2696 aaPredicted RBP7.64□□□□□ -1.19
CUX1-218ENST00000560541 NREPQ16612 68 aa7.63□□□□□ -1.19
CUX1-218ENST00000560541 XAGE1AQ9HD64 81 aa7.63□□□□□ -1.19
CUX1-218ENST00000560541 SPTSSBQ8NFR3 76 aa7.63□□□□□ -1.19
CUX1-218ENST00000560541 LAMTOR3Q9UHA4 124 aa7.63□□□□□ -1.19
CUX1-218ENST00000560541 LINC00575Q6W349 94 aa7.63□□□□□ -1.19
CUX1-218ENST00000560541 TRBV7-4A0A0J9YYF1 115 aa7.62□□□□□ -1.19
CUX1-218ENST00000560541 TRBV10-3A0A0K0K1G6 114 aa7.61□□□□□ -1.19
CUX1-218ENST00000560541 Q6ZRP5 223 aa7.61□□□□□ -1.19
CUX1-218ENST00000560541 APOC4P55056 127 aa7.6□□□□□ -1.19
CUX1-218ENST00000560541 PRR4Q16378 134 aa7.6□□□□□ -1.19
CUX1-218ENST00000560541 C9orf66Q5T8R8 295 aa7.6□□□□□ -1.19
CUX1-218ENST00000560541 Q6ZQY7 126 aa7.6□□□□□ -1.19
CUX1-218ENST00000560541 Q8NAQ8 132 aa7.6□□□□□ -1.19
CUX1-218ENST00000560541 H3BS24 57 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms