RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 RPL24P83731 157 aaKnown RBP5.09□□□□□ -1.59
CCDC88C-214ENST00000557507 COX6A2Q02221 97 aa5.09□□□□□ -1.59
CCDC88C-214ENST00000557507 CEND1Q8N111 149 aa5.09□□□□□ -1.59
CCDC88C-214ENST00000557507 C15orf56Q8N910 161 aa5.09□□□□□ -1.59
CCDC88C-214ENST00000557507 SPANXB1Q9NS25 103 aaPredicted RBP5.09□□□□□ -1.59
CCDC88C-214ENST00000557507 IGLV4-60A0A075B6I1 120 aa5.08□□□□□ -1.6
CCDC88C-214ENST00000557507 LINC01561Q8N1V8 128 aa5.08□□□□□ -1.6
CCDC88C-214ENST00000557507 TP73-AS1Q9UF72 201 aa5.08□□□□□ -1.6
CCDC88C-214ENST00000557507 NDUFA12Q9UI09 145 aa5.08□□□□□ -1.6
CCDC88C-214ENST00000557507 FAT4Q6V0I7 4981 aa5.08□□□□□ -1.6
CCDC88C-214ENST00000557507 A0A096LNI7 61 aa5.07□□□□□ -1.6
CCDC88C-214ENST00000557507 TIMM17BO60830 172 aa5.07□□□□□ -1.6
CCDC88C-214ENST00000557507 LORP23490 312 aaPredicted RBP5.07□□□□□ -1.6
CCDC88C-214ENST00000557507 RNASE13Q5GAN3 156 aaKnown RBP5.07□□□□□ -1.6
CCDC88C-214ENST00000557507 LINC00242Q5T6M2 205 aa5.07□□□□□ -1.6
CCDC88C-214ENST00000557507 LYRM7Q5U5X0 104 aa5.07□□□□□ -1.6
CCDC88C-214ENST00000557507 REG3GQ6UW15 175 aa5.07□□□□□ -1.6
CCDC88C-214ENST00000557507 SPINK6Q6UWN8 80 aa5.07□□□□□ -1.6
CCDC88C-214ENST00000557507 GTF2H5Q6ZYL4 71 aa5.07□□□□□ -1.6
CCDC88C-214ENST00000557507 TRAV8-4A0A0B4J246 113 aa5.06□□□□□ -1.6
CCDC88C-214ENST00000557507 A0A0J9YXY3 114 aa5.06□□□□□ -1.6
CCDC88C-214ENST00000557507 A0A1B0GV90 55 aa5.06□□□□□ -1.6
CCDC88C-214ENST00000557507 NDUFA1O15239 70 aa5.06□□□□□ -1.6
CCDC88C-214ENST00000557507 APOMO95445 188 aa5.06□□□□□ -1.6
CCDC88C-214ENST00000557507 PRSS2P07478 247 aa5.06□□□□□ -1.6
CCDC88C-214ENST00000557507 SPINK8P0C7L1 97 aa5.06□□□□□ -1.6
CCDC88C-214ENST00000557507 IFITM1P13164 125 aa5.06□□□□□ -1.6
CCDC88C-214ENST00000557507 HIGD2BQ4VC39 106 aa5.06□□□□□ -1.6
CCDC88C-214ENST00000557507 CDKN2A-AS1Q9UH64 79 aa5.06□□□□□ -1.6
CCDC88C-214ENST00000557507 VAMP3Q15836 100 aa5.05□□□□□ -1.6
CCDC88C-214ENST00000557507 FAM104AQ969W3 186 aa5.05□□□□□ -1.6
CCDC88C-214ENST00000557507 A0A087WZ39 114 aa5.04□□□□□ -1.6
CCDC88C-214ENST00000557507 IGKV3OR2-268A0A0C4DH90 116 aa5.04□□□□□ -1.6
CCDC88C-214ENST00000557507 IGLV5-39A0A0G2JS06 123 aa5.04□□□□□ -1.6
CCDC88C-214ENST00000557507 LINC00959A0A1B0GUT2 108 aa5.04□□□□□ -1.6
CCDC88C-214ENST00000557507 GAGE12HA6NDE8 117 aa5.04□□□□□ -1.6
CCDC88C-214ENST00000557507 C9orf118A6NHY6 69 aa5.04□□□□□ -1.6
CCDC88C-214ENST00000557507 FABP2P12104 132 aa5.04□□□□□ -1.6
CCDC88C-214ENST00000557507 MALP21145 153 aa5.04□□□□□ -1.6
CCDC88C-214ENST00000557507 CXCL5P42830 114 aa5.04□□□□□ -1.6
CCDC88C-214ENST00000557507 CD164L2Q6UWJ8 174 aa5.04□□□□□ -1.6
CCDC88C-214ENST00000557507 RAB37Q96AX2 223 aa5.04□□□□□ -1.6
CCDC88C-214ENST00000557507 SPANXDQ9BXN6 97 aa5.04□□□□□ -1.6
CCDC88C-214ENST00000557507 TTTY13Q9BZ97 58 aa5.04□□□□□ -1.6
CCDC88C-214ENST00000557507 NHP2Q9NX24 153 aaKnown RBP5.04□□□□□ -1.6
CCDC88C-214ENST00000557507 SPANXCQ9NY87 97 aa5.04□□□□□ -1.6
CCDC88C-214ENST00000557507 SMIM1B2RUZ4 78 aa5.03□□□□□ -1.6
CCDC88C-214ENST00000557507 COX7A2LO14548 114 aa5.03□□□□□ -1.6
CCDC88C-214ENST00000557507 MEIG1Q5JSS6 88 aa5.03□□□□□ -1.6
CCDC88C-214ENST00000557507 CFAP161Q6P656 301 aa5.03□□□□□ -1.6
CCDC88C-214ENST00000557507 COX7B2Q8TF08 81 aa5.03□□□□□ -1.6
CCDC88C-214ENST00000557507 PPDPFQ9H3Y8 114 aa5.03□□□□□ -1.6
CCDC88C-214ENST00000557507 GVQW2A0A096LPI5 108 aaPredicted RBP5.02□□□□□ -1.61
CCDC88C-214ENST00000557507 IGHV3OR16-9A0A0B4J2B5 98 aa5.02□□□□□ -1.61
CCDC88C-214ENST00000557507 GAGE10A6NGK3 116 aa5.02□□□□□ -1.61
CCDC88C-214ENST00000557507 TAX1BP3O14907 124 aa5.02□□□□□ -1.61
CCDC88C-214ENST00000557507 TSPEAR-AS2P59090 65 aa5.02□□□□□ -1.61
CCDC88C-214ENST00000557507 CKS1BP61024 79 aa5.02□□□□□ -1.61
CCDC88C-214ENST00000557507 C6orf226Q5I0X4 101 aa5.02□□□□□ -1.61
CCDC88C-214ENST00000557507 Q6ZRP5 223 aa5.02□□□□□ -1.61
CCDC88C-214ENST00000557507 A0A0B4J2C4 111 aa5.01□□□□□ -1.61
CCDC88C-214ENST00000557507 KRTAP9-6A0A140TA67 174 aa5.01□□□□□ -1.61
CCDC88C-214ENST00000557507 A0A1B0GWB2 263 aa5.01□□□□□ -1.61
CCDC88C-214ENST00000557507 H3BUT2 72 aa5.01□□□□□ -1.61
CCDC88C-214ENST00000557507 XCL1P47992 114 aa5.01□□□□□ -1.61
CCDC88C-214ENST00000557507 FXYD2P54710 66 aa5.01□□□□□ -1.61
CCDC88C-214ENST00000557507 UBE2V1Q13404 147 aa5.01□□□□□ -1.61
CCDC88C-214ENST00000557507 TOMM7Q9P0U1 55 aa5.01□□□□□ -1.61
CCDC88C-214ENST00000557507 A0A1W2PPM0 123 aa5□□□□□ -1.61
CCDC88C-214ENST00000557507 COX6CP09669 75 aa5□□□□□ -1.61
CCDC88C-214ENST00000557507 Q8IZM0 81 aa5□□□□□ -1.61
CCDC88C-214ENST00000557507 CHCHD10Q8WYQ3 142 aaPredicted RBP5□□□□□ -1.61
CCDC88C-214ENST00000557507 LINC00526Q96FQ7 95 aa5□□□□□ -1.61
CCDC88C-214ENST00000557507 PRO1854Q9UHT4 67 aa5□□□□□ -1.61
CCDC88C-214ENST00000557507 F8WDY8 70 aa4.99□□□□□ -1.61
CCDC88C-214ENST00000557507 FOXI1Q12951 378 aa4.99□□□□□ -1.61
CCDC88C-214ENST00000557507 COX17Q14061 63 aa4.99□□□□□ -1.61
CCDC88C-214ENST00000557507 C5orf38Q86SI9 138 aa4.99□□□□□ -1.61
CCDC88C-214ENST00000557507 MUSTN1Q8IVN3 82 aa4.99□□□□□ -1.61
CCDC88C-214ENST00000557507 ZNF625Q96I27 306 aaPredicted RBP4.99□□□□□ -1.61
CCDC88C-214ENST00000557507 LINC00474Q9P2X8 69 aa4.99□□□□□ -1.61
CCDC88C-214ENST00000557507 ERG28Q9UKR5 140 aa4.99□□□□□ -1.61
CCDC88C-214ENST00000557507 SPCS1Q9Y6A9 102 aa4.99□□□□□ -1.61
CCDC88C-214ENST00000557507 TRBV20-1A0A075B6N2 111 aa4.98□□□□□ -1.61
CCDC88C-214ENST00000557507 A4D1N5 150 aa4.98□□□□□ -1.61
CCDC88C-214ENST00000557507 SCGB1C2P0DMR2 95 aa4.98□□□□□ -1.61
CCDC88C-214ENST00000557507 PSMB2P49721 201 aa4.98□□□□□ -1.61
CCDC88C-214ENST00000557507 LINC00158P58513 81 aa4.98□□□□□ -1.61
CCDC88C-214ENST00000557507 Q1RN00 199 aa4.98□□□□□ -1.61
CCDC88C-214ENST00000557507 PRR26Q8N8Z3 221 aa4.98□□□□□ -1.61
CCDC88C-214ENST00000557507 CARD19Q96LW7 228 aa4.98□□□□□ -1.61
CCDC88C-214ENST00000557507 TRAV13-2A0A0B4J235 113 aa4.97□□□□□ -1.61
CCDC88C-214ENST00000557507 K7EP34 96 aa4.97□□□□□ -1.61
CCDC88C-214ENST00000557507 PSORS1C2Q9UIG4 136 aa4.97□□□□□ -1.61
CCDC88C-214ENST00000557507 LOC100996750A0A140TA64 210 aa4.96□□□□□ -1.62
CCDC88C-214ENST00000557507 A0A1W2PNN7 141 aa4.96□□□□□ -1.62
CCDC88C-214ENST00000557507 ZNF561-AS1K7EIQ3 104 aa4.96□□□□□ -1.62
CCDC88C-214ENST00000557507 K7ERJ3 54 aa4.96□□□□□ -1.62
CCDC88C-214ENST00000557507 CFC1BP0CG36 223 aa4.96□□□□□ -1.62
CCDC88C-214ENST00000557507 CFC1P0CG37 223 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms