RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 NKAPP1Q8N9T2 125 aa10.32□□□□□ -0.76
CUX1-215ENST00000556210 KPRPQ5T749 579 aaPredicted RBP10.32□□□□□ -0.76
CUX1-215ENST00000556210 ENHOQ6UWT2 76 aa10.32□□□□□ -0.76
CUX1-215ENST00000556210 NBPF19A0A087WUL8 3843 aa10.32□□□□□ -0.76
CUX1-215ENST00000556210 NANOS2P60321 138 aaKnown RBP10.32□□□□□ -0.76
CUX1-215ENST00000556210 C20orf197Q8N268 126 aa10.32□□□□□ -0.76
CUX1-215ENST00000556210 X6R8D5 127 aa10.31□□□□□ -0.76
CUX1-215ENST00000556210 DSCR8Q96T75 97 aa10.31□□□□□ -0.76
CUX1-215ENST00000556210 PLAC8L1A1L4L8 177 aa10.3□□□□□ -0.76
CUX1-215ENST00000556210 TMEM256-PLSCR3K7ERE1 68 aa10.3□□□□□ -0.76
CUX1-215ENST00000556210 PSCAO43653 123 aa10.3□□□□□ -0.76
CUX1-215ENST00000556210 Q6ZTC4 211 aa10.3□□□□□ -0.76
CUX1-215ENST00000556210 SCXQ7RTU7 201 aa10.3□□□□□ -0.76
CUX1-215ENST00000556210 KIR2DL5BQ8NHK3 375 aa10.3□□□□□ -0.76
CUX1-215ENST00000556210 C19orf73Q9NVV2 129 aa10.3□□□□□ -0.76
CUX1-215ENST00000556210 DEFB131BA0A096LNP1 70 aa10.29□□□□□ -0.76
CUX1-215ENST00000556210 A0A0U1RQV1 116 aa10.29□□□□□ -0.76
CUX1-215ENST00000556210 MIFP14174 115 aa10.29□□□□□ -0.76
CUX1-215ENST00000556210 RBM3P98179 157 aaKnown RBP10.29□□□□□ -0.76
CUX1-215ENST00000556210 UBE2DNLQ8IWF7 75 aa10.29□□□□□ -0.76
CUX1-215ENST00000556210 CSNK1G2-AS1Q8NCQ2 148 aa10.29□□□□□ -0.76
CUX1-215ENST00000556210 HRCT1Q6UXD1 115 aa10.28□□□□□ -0.76
CUX1-215ENST00000556210 WFDC10BQ8IUB3 73 aa10.28□□□□□ -0.76
CUX1-215ENST00000556210 C11orf45Q8TAV5 145 aa10.28□□□□□ -0.76
CUX1-215ENST00000556210 IGKV2-28A0A075B6P5 120 aa10.28□□□□□ -0.76
CUX1-215ENST00000556210 IGKV2D-28P01615 120 aa10.28□□□□□ -0.76
CUX1-215ENST00000556210 KRTAP1-1Q07627 177 aa10.28□□□□□ -0.76
CUX1-215ENST00000556210 Q6JHZ5 121 aa10.28□□□□□ -0.76
CUX1-215ENST00000556210 BAHCC1Q9P281 2608 aa10.28□□□□□ -0.76
CUX1-215ENST00000556210 C10orf25Q5T742 122 aa10.28□□□□□ -0.76
CUX1-215ENST00000556210 Q6ZQY7 126 aa10.27□□□□□ -0.76
CUX1-215ENST00000556210 FAM19A5Q7Z5A7 132 aaPredicted RBP10.27□□□□□ -0.77
CUX1-215ENST00000556210 UPK3BQ9BT76 320 aa10.27□□□□□ -0.77
CUX1-215ENST00000556210 A0A0J9YWU9 116 aa10.26□□□□□ -0.77
CUX1-215ENST00000556210 Q8IZM0 81 aa10.26□□□□□ -0.77
CUX1-215ENST00000556210 VWFP04275 2813 aa10.25□□□□□ -0.77
CUX1-215ENST00000556210 TENM4Q6N022 2769 aa10.24□□□□□ -0.77
CUX1-215ENST00000556210 LELP1Q5T871 98 aa10.24□□□□□ -0.77
CUX1-215ENST00000556210 IGKV2-24A0A0C4DH68 120 aa10.23□□□□□ -0.77
CUX1-215ENST00000556210 TMEM258P61165 79 aa10.23□□□□□ -0.77
CUX1-215ENST00000556210 DIRC1Q969H9 104 aa10.23□□□□□ -0.77
CUX1-215ENST00000556210 BRK1Q8WUW1 75 aa10.23□□□□□ -0.77
CUX1-215ENST00000556210 CCKP06307 115 aa10.22□□□□□ -0.77
CUX1-215ENST00000556210 FAM19A1Q7Z5A9 133 aa10.22□□□□□ -0.77
CUX1-215ENST00000556210 LINC01600Q96MT4 127 aa10.22□□□□□ -0.77
CUX1-215ENST00000556210 TRBV10-3A0A0K0K1G6 114 aa10.21□□□□□ -0.78
CUX1-215ENST00000556210 RPL37AP8A6NKH3 93 aa10.2□□□□□ -0.78
CUX1-215ENST00000556210 TENM1Q9UKZ4 2725 aa10.2□□□□□ -0.78
CUX1-215ENST00000556210 A0A1B0GUV1 79 aa10.2□□□□□ -0.78
CUX1-215ENST00000556210 C9orf129Q5T035 196 aaKnown RBP10.2□□□□□ -0.78
CUX1-215ENST00000556210 Q8N814 137 aa10.19□□□□□ -0.78
CUX1-215ENST00000556210 CRYGAP11844 174 aa10.18□□□□□ -0.78
CUX1-215ENST00000556210 UBE2BP63146 152 aa10.18□□□□□ -0.78
CUX1-215ENST00000556210 LYPD5Q6UWN5 251 aa10.18□□□□□ -0.78
CUX1-215ENST00000556210 IL17DQ8TAD2 202 aa10.18□□□□□ -0.78
CUX1-215ENST00000556210 COX7BP24311 80 aa10.17□□□□□ -0.78
CUX1-215ENST00000556210 ATP5EP2Q5VTU8 51 aa10.17□□□□□ -0.78
CUX1-215ENST00000556210 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.17□□□□□ -0.78
CUX1-215ENST00000556210 SNURFQ9Y675 71 aa10.16□□□□□ -0.78
CUX1-215ENST00000556210 OTOGQ6ZRI0 2925 aa10.15□□□□□ -0.78
CUX1-215ENST00000556210 FAM236DA0A1B0GTK5 79 aa10.15□□□□□ -0.78
CUX1-215ENST00000556210 FAM236CP0DP71 79 aa10.15□□□□□ -0.78
CUX1-215ENST00000556210 FBN1P35555 2871 aaKnown RBP10.15□□□□□ -0.79
CUX1-215ENST00000556210 PDZD2O15018 2839 aa10.14□□□□□ -0.79
CUX1-215ENST00000556210 ETDCA0A1B0GVM5 59 aa10.14□□□□□ -0.79
CUX1-215ENST00000556210 C3orf84H3BNL1 204 aa10.14□□□□□ -0.79
CUX1-215ENST00000556210 A0A096LNI7 61 aa10.14□□□□□ -0.79
CUX1-215ENST00000556210 SYCNQ0VAF6 134 aa10.13□□□□□ -0.79
CUX1-215ENST00000556210 Q8NAQ8 132 aa10.13□□□□□ -0.79
CUX1-215ENST00000556210 MPLKIPQ8TAP9 179 aa10.13□□□□□ -0.79
CUX1-215ENST00000556210 NDUFC2O95298 119 aa10.12□□□□□ -0.79
CUX1-215ENST00000556210 Q6ZRU5 148 aa10.12□□□□□ -0.79
CUX1-215ENST00000556210 ZNF73O43830 326 aaPredicted RBP10.11□□□□□ -0.79
CUX1-215ENST00000556210 LINC01561Q8N1V8 128 aa10.11□□□□□ -0.79
CUX1-215ENST00000556210 ESRGQ1W209 222 aa10.11□□□□□ -0.79
CUX1-215ENST00000556210 FAM19A3Q7Z5A8 133 aa10.09□□□□□ -0.79
CUX1-215ENST00000556210 HIGD2AQ9BW72 106 aa10.09□□□□□ -0.79
CUX1-215ENST00000556210 KMT2BQ9UMN6 2715 aaPredicted RBP10.08□□□□□ -0.8
CUX1-215ENST00000556210 COX17Q14061 63 aa10.08□□□□□ -0.8
CUX1-215ENST00000556210 C6orf48Q9UBA6 75 aa10.08□□□□□ -0.8
CUX1-215ENST00000556210 NREPQ16612 68 aa10.07□□□□□ -0.8
CUX1-215ENST00000556210 PDE6GP18545 87 aa10.07□□□□□ -0.8
CUX1-215ENST00000556210 F8WEM9 126 aa10.06□□□□□ -0.8
CUX1-215ENST00000556210 KRTAP24-1Q3LI83 254 aa10.06□□□□□ -0.8
CUX1-215ENST00000556210 C4orf26Q17RF5 130 aa10.06□□□□□ -0.8
CUX1-215ENST00000556210 C2orf48Q96LS8 159 aa10.05□□□□□ -0.8
CUX1-215ENST00000556210 LINC00575Q6W349 94 aa10.04□□□□□ -0.8
CUX1-215ENST00000556210 RPS28P62857 69 aaKnown RBP10.04□□□□□ -0.8
CUX1-215ENST00000556210 KIAA0087Q14695 138 aa10.04□□□□□ -0.8
CUX1-215ENST00000556210 TRAV7A0A075B6U4 112 aa10.03□□□□□ -0.8
CUX1-215ENST00000556210 M0R2N4 97 aa10.03□□□□□ -0.8
CUX1-215ENST00000556210 Q6ZVQ6 151 aa10.03□□□□□ -0.8
CUX1-215ENST00000556210 C22orf24Q9Y442 160 aa10.02□□□□□ -0.8
CUX1-215ENST00000556210 LINC01547P58512 204 aaPredicted RBP10.02□□□□□ -0.81
CUX1-215ENST00000556210 Q8N9L7 120 aa10.02□□□□□ -0.81
CUX1-215ENST00000556210 KRTAP10-11P60412 298 aa10.01□□□□□ -0.81
CUX1-215ENST00000556210 RMI2Q96E14 147 aa10.01□□□□□ -0.81
CUX1-215ENST00000556210 M0R378 163 aa10.01□□□□□ -0.81
CUX1-215ENST00000556210 STAB2Q8WWQ8 2551 aa10□□□□□ -0.81
CUX1-215ENST00000556210 CYSTM1Q9H1C7 97 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 136.1 ms