RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 H3BNG1 76 aa5.67□□□□□ -1.5
SYNE2-220ENST00000555612 CHTF8P0CG12 524 aa5.67□□□□□ -1.5
SYNE2-220ENST00000555612 Q8NAQ8 132 aa5.67□□□□□ -1.5
SYNE2-220ENST00000555612 C6orf48Q9UBA6 75 aa5.66□□□□□ -1.5
SYNE2-220ENST00000555612 TRBV7-6A0A0J9YX20 115 aa5.66□□□□□ -1.5
SYNE2-220ENST00000555612 F8P00451 2351 aa5.65□□□□□ -1.5
SYNE2-220ENST00000555612 IGKV2D-30A0A075B6S6 120 aa5.65□□□□□ -1.5
SYNE2-220ENST00000555612 NDUFC1O43677 76 aa5.65□□□□□ -1.5
SYNE2-220ENST00000555612 IGKV2-30P06310 120 aa5.65□□□□□ -1.5
SYNE2-220ENST00000555612 GOLGB1Q14789 3259 aaKnown RBP5.65□□□□□ -1.51
SYNE2-220ENST00000555612 CENPFP49454 3210 aa5.65□□□□□ -1.51
SYNE2-220ENST00000555612 A0A087WVE0 104 aa5.65□□□□□ -1.51
SYNE2-220ENST00000555612 HCG22E2RYF7 251 aa5.65□□□□□ -1.51
SYNE2-220ENST00000555612 IGHV3OR16-9A0A0B4J2B5 98 aa5.64□□□□□ -1.51
SYNE2-220ENST00000555612 Q6ZRP5 223 aa5.64□□□□□ -1.51
SYNE2-220ENST00000555612 HTTP42858 3142 aa5.64□□□□□ -1.51
SYNE2-220ENST00000555612 CRYGAP11844 174 aa5.64□□□□□ -1.51
SYNE2-220ENST00000555612 V9GYY9 64 aa5.64□□□□□ -1.51
SYNE2-220ENST00000555612 K7EIL1 84 aa5.64□□□□□ -1.51
SYNE2-220ENST00000555612 KIAA0087Q14695 138 aa5.64□□□□□ -1.51
SYNE2-220ENST00000555612 TYMSOSQ8TAI1 123 aa5.64□□□□□ -1.51
SYNE2-220ENST00000555612 FAM19A4Q96LR4 140 aa5.64□□□□□ -1.51
SYNE2-220ENST00000555612 EML5Q05BV3 1969 aa5.64□□□□□ -1.51
SYNE2-220ENST00000555612 ANKRD17O75179 2603 aaKnown RBP5.63□□□□□ -1.51
SYNE2-220ENST00000555612 FLNBO75369 2602 aaKnown RBP5.63□□□□□ -1.51
SYNE2-220ENST00000555612 ATP5EP56381 51 aaPredicted RBP5.63□□□□□ -1.51
SYNE2-220ENST00000555612 KRTAP10-11P60412 298 aa5.63□□□□□ -1.51
SYNE2-220ENST00000555612 Q9UF83 564 aa5.63□□□□□ -1.51
SYNE2-220ENST00000555612 H0Y9P7 68 aa5.62□□□□□ -1.51
SYNE2-220ENST00000555612 IGLV5-39A0A0G2JS06 123 aa5.61□□□□□ -1.51
SYNE2-220ENST00000555612 RPL37AP61513 92 aaKnown RBP5.61□□□□□ -1.51
SYNE2-220ENST00000555612 PTPRBP23467 1997 aa5.6□□□□□ -1.51
SYNE2-220ENST00000555612 COX7CP15954 63 aa5.6□□□□□ -1.51
SYNE2-220ENST00000555612 EPM2AB3EWF7 344 aa5.6□□□□□ -1.51
SYNE2-220ENST00000555612 HECTD1Q9ULT8 2610 aa5.6□□□□□ -1.51
SYNE2-220ENST00000555612 SPATA3Q8NHX4 192 aa5.59□□□□□ -1.51
SYNE2-220ENST00000555612 TRAV7A0A075B6U4 112 aa5.59□□□□□ -1.51
SYNE2-220ENST00000555612 DNAH10OSP0CZ25 163 aa5.59□□□□□ -1.51
SYNE2-220ENST00000555612 PRO0461Q9UI25 63 aa5.59□□□□□ -1.51
SYNE2-220ENST00000555612 hDV103S1A0JD37 113 aa5.58□□□□□ -1.52
SYNE2-220ENST00000555612 CHD7Q9P2D1 2997 aa5.58□□□□□ -1.52
SYNE2-220ENST00000555612 Q8NBF4 154 aa5.58□□□□□ -1.52
SYNE2-220ENST00000555612 COL27A1Q8IZC6 1860 aaPredicted RBP5.57□□□□□ -1.52
SYNE2-220ENST00000555612 C7orf65Q6ZTY9 151 aa5.57□□□□□ -1.52
SYNE2-220ENST00000555612 CCDC179H3BU77 68 aa5.57□□□□□ -1.52
SYNE2-220ENST00000555612 KRTAP10-3P60369 221 aa5.56□□□□□ -1.52
SYNE2-220ENST00000555612 SOSTDC1Q6X4U4 206 aa5.56□□□□□ -1.52
SYNE2-220ENST00000555612 GVQW2A0A096LPI5 108 aaPredicted RBP5.56□□□□□ -1.52
SYNE2-220ENST00000555612 TRBV7-7A0A0K0K1E9 115 aa5.56□□□□□ -1.52
SYNE2-220ENST00000555612 ST20-AS1Q8NBB2 130 aa5.56□□□□□ -1.52
SYNE2-220ENST00000555612 Q6ZRX8 168 aa5.55□□□□□ -1.52
SYNE2-220ENST00000555612 SMR3BP02814 79 aaPredicted RBP5.55□□□□□ -1.52
SYNE2-220ENST00000555612 CDIP1Q9H305 208 aa5.55□□□□□ -1.52
SYNE2-220ENST00000555612 LINC00846Q9NV44 126 aa5.55□□□□□ -1.52
SYNE2-220ENST00000555612 BCE1O60756 84 aa5.55□□□□□ -1.52
SYNE2-220ENST00000555612 C1orf64Q8NEQ6 169 aa5.55□□□□□ -1.52
SYNE2-220ENST00000555612 FAM168BA1KXE4 195 aa5.54□□□□□ -1.52
SYNE2-220ENST00000555612 ELOF1P60002 83 aaKnown RBP5.54□□□□□ -1.52
SYNE2-220ENST00000555612 A0A096LNT2 108 aa5.54□□□□□ -1.52
SYNE2-220ENST00000555612 LINC00476Q8WZB0 136 aa5.54□□□□□ -1.52
SYNE2-220ENST00000555612 COX6B2Q6YFQ2 88 aa5.53□□□□□ -1.52
SYNE2-220ENST00000555612 C19orf73Q9NVV2 129 aa5.53□□□□□ -1.52
SYNE2-220ENST00000555612 ATP11AUNQ6ZP68 121 aa5.53□□□□□ -1.52
SYNE2-220ENST00000555612 IGLV5-45A0A087WSX0 123 aa5.53□□□□□ -1.52
SYNE2-220ENST00000555612 SMIM29Q86T20 159 aa5.53□□□□□ -1.52
SYNE2-220ENST00000555612 Q96NJ1 140 aa5.53□□□□□ -1.52
SYNE2-220ENST00000555612 LINC00313P59037 77 aa5.53□□□□□ -1.52
SYNE2-220ENST00000555612 PSPHP1O15172 72 aa5.52□□□□□ -1.53
SYNE2-220ENST00000555612 SMCPP49901 116 aaPredicted RBP5.52□□□□□ -1.53
SYNE2-220ENST00000555612 CSNK1G2-AS1Q8NCQ2 148 aa5.51□□□□□ -1.53
SYNE2-220ENST00000555612 PCSK5Q92824 1860 aa5.51□□□□□ -1.53
SYNE2-220ENST00000555612 TMEM254Q8TBM7 123 aa5.51□□□□□ -1.53
SYNE2-220ENST00000555612 PMAIP1Q13794 54 aa5.5□□□□□ -1.53
SYNE2-220ENST00000555612 FAM218AQ96MZ4 157 aa5.49□□□□□ -1.53
SYNE2-220ENST00000555612 MGAM2Q2M2H8 2515 aa5.49□□□□□ -1.53
SYNE2-220ENST00000555612 A0A087WTM6 91 aa5.49□□□□□ -1.53
SYNE2-220ENST00000555612 CXCL6P80162 114 aa5.49□□□□□ -1.53
SYNE2-220ENST00000555612 SMIM26A0A096LP01 95 aa5.48□□□□□ -1.53
SYNE2-220ENST00000555612 TM2D3Q9BRN9 247 aa5.48□□□□□ -1.53
SYNE2-220ENST00000555612 TP53AIP1Q9HCN2 124 aa5.48□□□□□ -1.53
SYNE2-220ENST00000555612 C1orf195Q5TG92 126 aa5.48□□□□□ -1.53
SYNE2-220ENST00000555612 KRTAP1-3Q8IUG1 177 aa5.47□□□□□ -1.53
SYNE2-220ENST00000555612 VPREB1P12018 145 aa5.47□□□□□ -1.53
SYNE2-220ENST00000555612 LINC00304Q8N9R0 145 aa5.47□□□□□ -1.53
SYNE2-220ENST00000555612 LINC00336Q6ZUF6 198 aa5.46□□□□□ -1.54
SYNE2-220ENST00000555612 LINC01600Q96MT4 127 aa5.45□□□□□ -1.54
SYNE2-220ENST00000555612 KRTAP1-1Q07627 177 aa5.45□□□□□ -1.54
SYNE2-220ENST00000555612 C9orf92A6NGG3 77 aa5.45□□□□□ -1.54
SYNE2-220ENST00000555612 IGLV1-50A0A075B6I6 118 aa5.44□□□□□ -1.54
SYNE2-220ENST00000555612 IGLV8-61A0A075B6I0 122 aa5.44□□□□□ -1.54
SYNE2-220ENST00000555612 GIG44P09565 113 aaPredicted RBP5.44□□□□□ -1.54
SYNE2-220ENST00000555612 APLNQ9ULZ1 77 aa5.44□□□□□ -1.54
SYNE2-220ENST00000555612 ACYP2P14621 99 aa5.43□□□□□ -1.54
SYNE2-220ENST00000555612 C15orf56Q8N910 161 aa5.43□□□□□ -1.54
SYNE2-220ENST00000555612 LITAFQ99732 161 aa5.43□□□□□ -1.54
SYNE2-220ENST00000555612 A0A1B0GU69 56 aa5.43□□□□□ -1.54
SYNE2-220ENST00000555612 Q6ZQT0 140 aa5.43□□□□□ -1.54
SYNE2-220ENST00000555612 USP24Q9UPU5 2620 aa5.43□□□□□ -1.54
SYNE2-220ENST00000555612 ZNF861PO60384 105 aa5.42□□□□□ -1.54
SYNE2-220ENST00000555612 RANBP2P49792 3224 aaKnown RBP5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms