RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 SS18L2Q9UHA2 77 aa6.68□□□□□ -1.34
SRP54-208ENST00000555557 XGP55808 180 aa6.67□□□□□ -1.34
SRP54-208ENST00000555557 C6orf48Q9UBA6 75 aa6.67□□□□□ -1.34
SRP54-208ENST00000555557 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.66□□□□□ -1.34
SRP54-208ENST00000555557 LINC00158P58513 81 aa6.66□□□□□ -1.34
SRP54-208ENST00000555557 NPC2P61916 151 aa6.66□□□□□ -1.34
SRP54-208ENST00000555557 SYCNQ0VAF6 134 aa6.66□□□□□ -1.34
SRP54-208ENST00000555557 SRSF9Q13242 221 aaKnown RBP eCLIP6.66□□□□□ -1.34
SRP54-208ENST00000555557 C2orf48Q96LS8 159 aa6.66□□□□□ -1.34
SRP54-208ENST00000555557 SMCPP49901 116 aaPredicted RBP6.66□□□□□ -1.34
SRP54-208ENST00000555557 SFTA2Q6UW10 78 aa6.66□□□□□ -1.34
SRP54-208ENST00000555557 EIF4EBP3O60516 100 aaPredicted RBP6.65□□□□□ -1.34
SRP54-208ENST00000555557 PSMB2P49721 201 aa6.65□□□□□ -1.34
SRP54-208ENST00000555557 CIRBPQ14011 172 aaKnown RBP6.65□□□□□ -1.34
SRP54-208ENST00000555557 TEN1Q86WV5 123 aa6.65□□□□□ -1.34
SRP54-208ENST00000555557 A0A087WTM6 91 aa6.64□□□□□ -1.35
SRP54-208ENST00000555557 RTL8CO15255 209 aa6.64□□□□□ -1.35
SRP54-208ENST00000555557 FUSP35637 526 aaKnown RBP eCLIP6.64□□□□□ -1.35
SRP54-208ENST00000555557 MIR7-3HGQ8N6C7 128 aa6.64□□□□□ -1.35
SRP54-208ENST00000555557 BIRC6Q9NR09 4857 aa6.64□□□□□ -1.35
SRP54-208ENST00000555557 TRBV20-1A0A075B6N2 111 aa6.64□□□□□ -1.35
SRP54-208ENST00000555557 TIMM17BO60830 172 aa6.64□□□□□ -1.35
SRP54-208ENST00000555557 TNP2Q05952 138 aa6.64□□□□□ -1.35
SRP54-208ENST00000555557 CARD19Q96LW7 228 aa6.64□□□□□ -1.35
SRP54-208ENST00000555557 TRBV30A0A0K0K1B3 111 aa6.63□□□□□ -1.35
SRP54-208ENST00000555557 B5MCH6 92 aa6.63□□□□□ -1.35
SRP54-208ENST00000555557 MUSTN1Q8IVN3 82 aa6.63□□□□□ -1.35
SRP54-208ENST00000555557 Q8N814 137 aa6.63□□□□□ -1.35
SRP54-208ENST00000555557 FRAS1Q86XX4 4008 aa6.63□□□□□ -1.35
SRP54-208ENST00000555557 C14orf177Q52M58 125 aa6.62□□□□□ -1.35
SRP54-208ENST00000555557 SOSTDC1Q6X4U4 206 aa6.62□□□□□ -1.35
SRP54-208ENST00000555557 SPANXDQ9BXN6 97 aa6.62□□□□□ -1.35
SRP54-208ENST00000555557 SPANXCQ9NY87 97 aa6.62□□□□□ -1.35
SRP54-208ENST00000555557 FAT2Q9NYQ8 4349 aa6.62□□□□□ -1.35
SRP54-208ENST00000555557 LOC107984156A0A0G2JMH3 177 aa6.62□□□□□ -1.35
SRP54-208ENST00000555557 F8WDY8 70 aa6.62□□□□□ -1.35
SRP54-208ENST00000555557 M0QXV9 152 aa6.62□□□□□ -1.35
SRP54-208ENST00000555557 ARL17AQ8IVW1 177 aa6.62□□□□□ -1.35
SRP54-208ENST00000555557 GAGE2BQ13066 116 aa6.61□□□□□ -1.35
SRP54-208ENST00000555557 COX17Q14061 63 aa6.61□□□□□ -1.35
SRP54-208ENST00000555557 LINC01620Q4KN68 170 aa6.61□□□□□ -1.35
SRP54-208ENST00000555557 GAGE2EQ4V326 116 aa6.61□□□□□ -1.35
SRP54-208ENST00000555557 LINC00308Q8TCZ7 52 aa6.61□□□□□ -1.35
SRP54-208ENST00000555557 GAGE2DQ9UEU5 116 aa6.61□□□□□ -1.35
SRP54-208ENST00000555557 CNBPP62633 177 aaKnown RBP6.6□□□□□ -1.35
SRP54-208ENST00000555557 Q6Q795 121 aa6.6□□□□□ -1.35
SRP54-208ENST00000555557 Q6ZRP5 223 aa6.6□□□□□ -1.35
SRP54-208ENST00000555557 XAGE1AQ9HD64 81 aa6.6□□□□□ -1.35
SRP54-208ENST00000555557 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.6□□□□□ -1.35
SRP54-208ENST00000555557 NDUFV3P56181 108 aaKnown RBP6.6□□□□□ -1.35
SRP54-208ENST00000555557 SND1-IT1Q9HBX3 110 aa6.6□□□□□ -1.35
SRP54-208ENST00000555557 NDUFC2-KCTD14E9PQ53 114 aa6.59□□□□□ -1.35
SRP54-208ENST00000555557 SNCGO76070 127 aa6.59□□□□□ -1.35
SRP54-208ENST00000555557 SCGB1C2P0DMR2 95 aa6.59□□□□□ -1.35
SRP54-208ENST00000555557 IFITM1P13164 125 aa6.59□□□□□ -1.35
SRP54-208ENST00000555557 RPL18AQ02543 176 aaKnown RBP6.59□□□□□ -1.35
SRP54-208ENST00000555557 KRTAP3-3Q9BYR6 98 aa6.59□□□□□ -1.35
SRP54-208ENST00000555557 KRTAP3-2Q9BYR7 98 aa6.59□□□□□ -1.35
SRP54-208ENST00000555557 DNAH11Q96DT5 4516 aa6.58□□□□□ -1.36
SRP54-208ENST00000555557 A4D1N5 150 aa6.58□□□□□ -1.36
SRP54-208ENST00000555557 ANKRD29Q8N6D5 301 aa6.58□□□□□ -1.36
SRP54-208ENST00000555557 TCL1BO95988 128 aa6.57□□□□□ -1.36
SRP54-208ENST00000555557 C9orf163Q8N9P6 203 aa6.57□□□□□ -1.36
SRP54-208ENST00000555557 Q8NDZ9 215 aa6.57□□□□□ -1.36
SRP54-208ENST00000555557 TLX1NBP0CAT3 122 aa6.56□□□□□ -1.36
SRP54-208ENST00000555557 PRR3P79522 188 aaKnown RBP6.56□□□□□ -1.36
SRP54-208ENST00000555557 SMIM20Q8N5G0 67 aa6.56□□□□□ -1.36
SRP54-208ENST00000555557 LOC107984640A0A0U1RRK4 108 aa6.56□□□□□ -1.36
SRP54-208ENST00000555557 KRTAP10-2P60368 255 aa6.56□□□□□ -1.36
SRP54-208ENST00000555557 C9orf129Q5T035 196 aaKnown RBP6.56□□□□□ -1.36
SRP54-208ENST00000555557 HECTD4Q9Y4D8 3996 aa6.55□□□□□ -1.36
SRP54-208ENST00000555557 IGKV2-24A0A0C4DH68 120 aa6.55□□□□□ -1.36
SRP54-208ENST00000555557 CCDC179H3BU77 68 aa6.55□□□□□ -1.36
SRP54-208ENST00000555557 SLC25A20O43772 301 aa6.55□□□□□ -1.36
SRP54-208ENST00000555557 CFC1BP0CG36 223 aa6.55□□□□□ -1.36
SRP54-208ENST00000555557 CFC1P0CG37 223 aa6.55□□□□□ -1.36
SRP54-208ENST00000555557 A0A096LNI7 61 aa6.54□□□□□ -1.36
SRP54-208ENST00000555557 IGLV5-52A0A0A0MRZ9 124 aa6.54□□□□□ -1.36
SRP54-208ENST00000555557 COPS9Q8WXC6 57 aa6.54□□□□□ -1.36
SRP54-208ENST00000555557 TMEM126AQ9H061 195 aa6.54□□□□□ -1.36
SRP54-208ENST00000555557 DNAH5Q8TE73 4624 aa6.54□□□□□ -1.36
SRP54-208ENST00000555557 CHTF8P0CG12 524 aa6.54□□□□□ -1.36
SRP54-208ENST00000555557 SDIM1Q6ZPB5 146 aa6.54□□□□□ -1.36
SRP54-208ENST00000555557 LINC01600Q96MT4 127 aa6.54□□□□□ -1.36
SRP54-208ENST00000555557 PRO1854Q9UHT4 67 aa6.54□□□□□ -1.36
SRP54-208ENST00000555557 IGKV2-28A0A075B6P5 120 aa6.53□□□□□ -1.36
SRP54-208ENST00000555557 FAM168BA1KXE4 195 aa6.53□□□□□ -1.36
SRP54-208ENST00000555557 IGKV2D-28P01615 120 aa6.53□□□□□ -1.36
SRP54-208ENST00000555557 PKD1P98161 4303 aa6.53□□□□□ -1.36
SRP54-208ENST00000555557 C16orf90A8MZG2 172 aa6.52□□□□□ -1.37
SRP54-208ENST00000555557 C9JAW5 83 aa6.52□□□□□ -1.37
SRP54-208ENST00000555557 PANO1I0J062 215 aa6.52□□□□□ -1.37
SRP54-208ENST00000555557 NCR3O14931 201 aa6.52□□□□□ -1.37
SRP54-208ENST00000555557 SERTAD4-AS1Q5TG53 156 aa6.52□□□□□ -1.37
SRP54-208ENST00000555557 RPL13AP40429 203 aaKnown RBP6.51□□□□□ -1.37
SRP54-208ENST00000555557 ATXN8Q156A1 80 aa6.51□□□□□ -1.37
SRP54-208ENST00000555557 KRTAP7-1Q8IUC3 87 aa6.51□□□□□ -1.37
SRP54-208ENST00000555557 LINC00337Q8N6G1 96 aa6.51□□□□□ -1.37
SRP54-208ENST00000555557 PPDPFQ9H3Y8 114 aa6.51□□□□□ -1.37
SRP54-208ENST00000555557 H7C2G1 150 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 6.3 ms