RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 GOLGA4Q13439 2230 aaKnown RBP-0.29□□□□□ -2.46
SCFD1-216ENST00000555550 MTORP42345 2549 aa-0.3□□□□□ -2.46
SCFD1-216ENST00000555550 TCHHQ07283 1943 aa-0.3□□□□□ -2.46
SCFD1-216ENST00000555550 TARBP1Q13395 1621 aaKnown RBP-0.3□□□□□ -2.46
SCFD1-216ENST00000555550 MUC3AQ02505 3323 aa-0.3□□□□□ -2.46
SCFD1-216ENST00000555550 FAM24AA6NFZ4 105 aa-0.3□□□□□ -2.46
SCFD1-216ENST00000555550 MGPP08493 103 aa-0.3□□□□□ -2.46
SCFD1-216ENST00000555550 SPRR2EP22531 72 aa-0.3□□□□□ -2.46
SCFD1-216ENST00000555550 SPRR2AP35326 72 aa-0.3□□□□□ -2.46
SCFD1-216ENST00000555550 GNG11P61952 73 aa-0.3□□□□□ -2.46
SCFD1-216ENST00000555550 NPVFQ9HCQ7 196 aa-0.3□□□□□ -2.46
SCFD1-216ENST00000555550 PRO1854Q9UHT4 67 aa-0.3□□□□□ -2.46
SCFD1-216ENST00000555550 CSPG4Q6UVK1 2322 aa-0.3□□□□□ -2.46
SCFD1-216ENST00000555550 NLRP1Q9C000 1473 aa-0.3□□□□□ -2.46
SCFD1-216ENST00000555550 ANKRD36BQ8N2N9 1353 aa-0.31□□□□□ -2.46
SCFD1-216ENST00000555550 TSC2P49815 1807 aa-0.31□□□□□ -2.46
SCFD1-216ENST00000555550 APOC3P02656 99 aa-0.31□□□□□ -2.46
SCFD1-216ENST00000555550 SMIM6P0DI80 62 aa-0.31□□□□□ -2.46
SCFD1-216ENST00000555550 S100PP25815 95 aa-0.31□□□□□ -2.46
SCFD1-216ENST00000555550 UBA52P62987 128 aaKnown RBP-0.31□□□□□ -2.46
SCFD1-216ENST00000555550 SFTA2Q6UW10 78 aa-0.31□□□□□ -2.46
SCFD1-216ENST00000555550 A0A0G2JMZ2 1700 aa-0.31□□□□□ -2.46
SCFD1-216ENST00000555550 TEX14Q8IWB6 1497 aa-0.31□□□□□ -2.46
SCFD1-216ENST00000555550 SHPRHQ149N8 1683 aa-0.31□□□□□ -2.46
SCFD1-216ENST00000555550 VPS8Q8N3P4 1428 aa-0.31□□□□□ -2.46
SCFD1-216ENST00000555550 VCANP13611 3396 aa-0.31□□□□□ -2.46
SCFD1-216ENST00000555550 NKTRP30414 1462 aaKnown RBP-0.32□□□□□ -2.46
SCFD1-216ENST00000555550 ABCC10Q5T3U5 1492 aa-0.32□□□□□ -2.46
SCFD1-216ENST00000555550 MLH3Q9UHC1 1453 aa-0.32□□□□□ -2.46
SCFD1-216ENST00000555550 TRAV30A0A087WSZ9 112 aa-0.32□□□□□ -2.46
SCFD1-216ENST00000555550 NAP1L6A6NFF2 107 aa-0.32□□□□□ -2.46
SCFD1-216ENST00000555550 ATP6V1G2-DDX39BF2Z307 99 aa-0.32□□□□□ -2.46
SCFD1-216ENST00000555550 SAA2P0DJI9 122 aaPredicted RBP-0.32□□□□□ -2.46
SCFD1-216ENST00000555550 COX6B1P14854 86 aa-0.32□□□□□ -2.46
SCFD1-216ENST00000555550 SVBPQ8N300 66 aa-0.32□□□□□ -2.46
SCFD1-216ENST00000555550 C12orf57Q99622 126 aa-0.32□□□□□ -2.46
SCFD1-216ENST00000555550 MANBALQ9NQG1 85 aa-0.32□□□□□ -2.46
SCFD1-216ENST00000555550 SVEP1Q4LDE5 3571 aa-0.32□□□□□ -2.46
SCFD1-216ENST00000555550 FREM2Q5SZK8 3169 aa-0.32□□□□□ -2.46
SCFD1-216ENST00000555550 KIAA1551Q9HCM1 1747 aa-0.33□□□□□ -2.46
SCFD1-216ENST00000555550 DNAJC13O75165 2243 aa-0.33□□□□□ -2.46
SCFD1-216ENST00000555550 DMXL2Q8TDJ6 3036 aa-0.33□□□□□ -2.46
SCFD1-216ENST00000555550 A0A087WVE0 104 aa-0.33□□□□□ -2.46
SCFD1-216ENST00000555550 TRBV7-4A0A0J9YYF1 115 aa-0.33□□□□□ -2.46
SCFD1-216ENST00000555550 C20orf202A1L168 122 aa-0.33□□□□□ -2.46
SCFD1-216ENST00000555550 COX6CP09669 75 aa-0.33□□□□□ -2.46
SCFD1-216ENST00000555550 SNCAP37840 140 aa-0.33□□□□□ -2.46
SCFD1-216ENST00000555550 MRPS10P82664 201 aaKnown RBP-0.33□□□□□ -2.46
SCFD1-216ENST00000555550 UQCR10Q9UDW1 63 aa-0.33□□□□□ -2.46
SCFD1-216ENST00000555550 ANKRD26Q9UPS8 1709 aa-0.33□□□□□ -2.46
SCFD1-216ENST00000555550 CFAP47Q6ZTR5 3102 aa-0.33□□□□□ -2.46
SCFD1-216ENST00000555550 MGAQ8IWI9 3026 aa-0.34□□□□□ -2.46
SCFD1-216ENST00000555550 TRBV25-1A0A075B6N4 114 aa-0.34□□□□□ -2.46
SCFD1-216ENST00000555550 RBP2P50120 134 aa-0.34□□□□□ -2.46
SCFD1-216ENST00000555550 SEC11AP67812 179 aa-0.34□□□□□ -2.46
SCFD1-216ENST00000555550 WHAMMP3Q1A5X7 153 aa-0.34□□□□□ -2.46
SCFD1-216ENST00000555550 EDC4Q6P2E9 1401 aaKnown RBP-0.34□□□□□ -2.46
SCFD1-216ENST00000555550 CNTLNQ9NXG0 1405 aa-0.34□□□□□ -2.46
SCFD1-216ENST00000555550 FMN2Q9NZ56 1722 aa-0.34□□□□□ -2.46
SCFD1-216ENST00000555550 C5orf42Q9H799 3197 aa-0.34□□□□□ -2.46
SCFD1-216ENST00000555550 URB1O60287 2271 aaKnown RBP-0.34□□□□□ -2.46
SCFD1-216ENST00000555550 CRYBG3Q68DQ2 2970 aa-0.34□□□□□ -2.46
SCFD1-216ENST00000555550 CNOT1A5YKK6 2376 aaKnown RBP-0.34□□□□□ -2.46
SCFD1-216ENST00000555550 POLA1P09884 1462 aaPredicted RBP-0.35□□□□□ -2.46
SCFD1-216ENST00000555550 PDCD11Q14690 1871 aaKnown RBP-0.35□□□□□ -2.46
SCFD1-216ENST00000555550 SAMD9Q5K651 1589 aa-0.35□□□□□ -2.47
SCFD1-216ENST00000555550 FXYD6-FXYD2A0A087WZ82 144 aa-0.35□□□□□ -2.47
SCFD1-216ENST00000555550 A0A0G2JND7 137 aa-0.35□□□□□ -2.47
SCFD1-216ENST00000555550 TRBV7-7A0A0K0K1E9 115 aa-0.35□□□□□ -2.47
SCFD1-216ENST00000555550 ASIPP42127 132 aa-0.35□□□□□ -2.47
SCFD1-216ENST00000555550 PIGYQ3MUY2 71 aa-0.35□□□□□ -2.47
SCFD1-216ENST00000555550 FDCSPQ8NFU4 85 aa-0.35□□□□□ -2.47
SCFD1-216ENST00000555550 TRGV9Q99603 122 aa-0.35□□□□□ -2.47
SCFD1-216ENST00000555550 CRIPTQ9P021 101 aa-0.35□□□□□ -2.47
SCFD1-216ENST00000555550 SPTA1P02549 2419 aa-0.35□□□□□ -2.47
SCFD1-216ENST00000555550 WNK1Q9H4A3 2382 aa-0.35□□□□□ -2.47
SCFD1-216ENST00000555550 UBR1Q8IWV7 1749 aa-0.35□□□□□ -2.47
SCFD1-216ENST00000555550 TROQ12816 1431 aaPredicted RBP-0.36□□□□□ -2.47
SCFD1-216ENST00000555550 DYNC1H1Q14204 4646 aaKnown RBP-0.36□□□□□ -2.47
SCFD1-216ENST00000555550 LOC400499M0QZD8 3231 aa-0.36□□□□□ -2.47
SCFD1-216ENST00000555550 TMEM218A2RU14 115 aa-0.36□□□□□ -2.47
SCFD1-216ENST00000555550 CRYM-AS1A6NIL9 109 aa-0.36□□□□□ -2.47
SCFD1-216ENST00000555550 CFDP00746 253 aaPredicted RBP-0.36□□□□□ -2.47
SCFD1-216ENST00000555550 KRTAP6-2Q3LI66 62 aa-0.36□□□□□ -2.47
SCFD1-216ENST00000555550 NCMAPQ5T1S8 102 aa-0.36□□□□□ -2.47
SCFD1-216ENST00000555550 LELP1Q5T871 98 aa-0.36□□□□□ -2.47
SCFD1-216ENST00000555550 GTF2H5Q6ZYL4 71 aa-0.36□□□□□ -2.47
SCFD1-216ENST00000555550 SNHG12Q9BXW3 62 aa-0.36□□□□□ -2.47
SCFD1-216ENST00000555550 KNDC1Q76NI1 1749 aa-0.36□□□□□ -2.47
SCFD1-216ENST00000555550 DNAH7Q8WXX0 4024 aa-0.36□□□□□ -2.47
SCFD1-216ENST00000555550 SETBP1Q9Y6X0 1596 aa-0.36□□□□□ -2.47
SCFD1-216ENST00000555550 RELNP78509 3460 aa-0.37□□□□□ -2.47
SCFD1-216ENST00000555550 C7orf77A4D0Y5 90 aa-0.37□□□□□ -2.47
SCFD1-216ENST00000555550 KLK9Q2XQG4 91 aa-0.37□□□□□ -2.47
SCFD1-216ENST00000555550 ACBD7Q8N6N7 88 aa-0.37□□□□□ -2.47
SCFD1-216ENST00000555550 SERP2Q8N6R1 65 aa-0.37□□□□□ -2.47
SCFD1-216ENST00000555550 FYCO1Q9BQS8 1478 aa-0.37□□□□□ -2.47
SCFD1-216ENST00000555550 SZT2Q5T011 3432 aa-0.38□□□□□ -2.47
SCFD1-216ENST00000555550 EPRSP07814 1512 aaKnown RBP-0.38□□□□□ -2.47
SCFD1-216ENST00000555550 CUX1P39880 1505 aa-0.38□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms