RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.01□□□□□ -1.29
CCDC88C-208ENST00000554165 HIST1H2BHQ93079 126 aa7.01□□□□□ -1.29
CCDC88C-208ENST00000554165 HIST1H2BNQ99877 126 aa7.01□□□□□ -1.29
CCDC88C-208ENST00000554165 HIST1H2BMQ99879 126 aa7.01□□□□□ -1.29
CCDC88C-208ENST00000554165 LOC100996750A0A140TA64 210 aa7□□□□□ -1.29
CCDC88C-208ENST00000554165 TSPEAR-AS2P59090 65 aa7□□□□□ -1.29
CCDC88C-208ENST00000554165 KRTAP4-6Q9BYQ5 205 aa7□□□□□ -1.29
CCDC88C-208ENST00000554165 TP73-AS1Q9UF72 201 aa7□□□□□ -1.29
CCDC88C-208ENST00000554165 PLA2G2DQ9UNK4 145 aa7□□□□□ -1.29
CCDC88C-208ENST00000554165 IGLV5-37A0A075B6J1 123 aa6.99□□□□□ -1.29
CCDC88C-208ENST00000554165 H0Y9J4 135 aa6.99□□□□□ -1.29
CCDC88C-208ENST00000554165 VPREB1P12018 145 aa6.99□□□□□ -1.29
CCDC88C-208ENST00000554165 LINC00158P58513 81 aa6.99□□□□□ -1.29
CCDC88C-208ENST00000554165 DIRC1Q969H9 104 aa6.99□□□□□ -1.29
CCDC88C-208ENST00000554165 HSPB8Q9UJY1 196 aa6.99□□□□□ -1.29
CCDC88C-208ENST00000554165 SMIM13P0DJ93 91 aa6.98□□□□□ -1.29
CCDC88C-208ENST00000554165 PRR26Q8N8Z3 221 aa6.98□□□□□ -1.29
CCDC88C-208ENST00000554165 NKAPP1Q8N9T2 125 aa6.98□□□□□ -1.29
CCDC88C-208ENST00000554165 TMA7Q9Y2S6 64 aaKnown RBP6.98□□□□□ -1.29
CCDC88C-208ENST00000554165 IGKV2-28A0A075B6P5 120 aa6.97□□□□□ -1.29
CCDC88C-208ENST00000554165 IGKV2D-28P01615 120 aa6.97□□□□□ -1.29
CCDC88C-208ENST00000554165 KRTAP1-4P0C5Y4 121 aa6.97□□□□□ -1.29
CCDC88C-208ENST00000554165 COX17Q14061 63 aa6.97□□□□□ -1.29
CCDC88C-208ENST00000554165 NDUFA12Q9UI09 145 aa6.97□□□□□ -1.29
CCDC88C-208ENST00000554165 UBR4Q5T4S7 5183 aa6.97□□□□□ -1.29
CCDC88C-208ENST00000554165 ZNF861PO60384 105 aa6.96□□□□□ -1.3
CCDC88C-208ENST00000554165 BCE1O60756 84 aa6.96□□□□□ -1.3
CCDC88C-208ENST00000554165 DPM2O94777 84 aa6.96□□□□□ -1.3
CCDC88C-208ENST00000554165 TMEM238C9JI98 176 aa6.95□□□□□ -1.3
CCDC88C-208ENST00000554165 PLNP26678 52 aa6.95□□□□□ -1.3
CCDC88C-208ENST00000554165 LEPROTO15243 131 aa6.94□□□□□ -1.3
CCDC88C-208ENST00000554165 IGKCP01834 107 aa6.94□□□□□ -1.3
CCDC88C-208ENST00000554165 MEIG1Q5JSS6 88 aa6.94□□□□□ -1.3
CCDC88C-208ENST00000554165 SFTA2Q6UW10 78 aa6.94□□□□□ -1.3
CCDC88C-208ENST00000554165 MIR7-3HGQ8N6C7 128 aa6.94□□□□□ -1.3
CCDC88C-208ENST00000554165 MAP1LC3CQ9BXW4 147 aa6.94□□□□□ -1.3
CCDC88C-208ENST00000554165 IGLV1-50A0A075B6I6 118 aa6.93□□□□□ -1.3
CCDC88C-208ENST00000554165 SYS1-DBNDD2H3BUS1 97 aa6.93□□□□□ -1.3
CCDC88C-208ENST00000554165 J3QQQ9 107 aa6.93□□□□□ -1.3
CCDC88C-208ENST00000554165 DAND5Q8N907 189 aa6.93□□□□□ -1.3
CCDC88C-208ENST00000554165 MYMXA0A1B0GTQ4 84 aa6.92□□□□□ -1.3
CCDC88C-208ENST00000554165 HERV-K104P63124 156 aa6.92□□□□□ -1.3
CCDC88C-208ENST00000554165 RPL24P83731 157 aaKnown RBP6.92□□□□□ -1.3
CCDC88C-208ENST00000554165 KRTAP13-1Q8IUC0 172 aa6.92□□□□□ -1.3
CCDC88C-208ENST00000554165 BOD1L2Q8IYS8 172 aa6.92□□□□□ -1.3
CCDC88C-208ENST00000554165 PLEKHB2Q96CS7 222 aa6.92□□□□□ -1.3
CCDC88C-208ENST00000554165 ANAPC11Q9NYG5 84 aa6.92□□□□□ -1.3
CCDC88C-208ENST00000554165 M0R378 163 aa6.91□□□□□ -1.3
CCDC88C-208ENST00000554165 ATP6V1G1O75348 118 aa6.91□□□□□ -1.3
CCDC88C-208ENST00000554165 RPL28P46779 137 aaKnown RBP6.91□□□□□ -1.3
CCDC88C-208ENST00000554165 PRLHP81277 87 aa6.91□□□□□ -1.3
CCDC88C-208ENST00000554165 NCR3O14931 201 aa6.9□□□□□ -1.3
CCDC88C-208ENST00000554165 C3orf79P0CE67 100 aa6.9□□□□□ -1.3
CCDC88C-208ENST00000554165 UBE2AP49459 152 aa6.9□□□□□ -1.3
CCDC88C-208ENST00000554165 HERVK_113P61574 105 aa6.9□□□□□ -1.3
CCDC88C-208ENST00000554165 COA6Q5JTJ3 125 aaKnown RBP6.9□□□□□ -1.3
CCDC88C-208ENST00000554165 TMEM126AQ9H061 195 aa6.9□□□□□ -1.3
CCDC88C-208ENST00000554165 EIF4EBP3O60516 100 aaPredicted RBP6.89□□□□□ -1.31
CCDC88C-208ENST00000554165 LGALS3P17931 250 aaKnown RBP6.89□□□□□ -1.31
CCDC88C-208ENST00000554165 LINC01545Q5VT33 79 aa6.89□□□□□ -1.31
CCDC88C-208ENST00000554165 A0A087X002 238 aa6.88□□□□□ -1.31
CCDC88C-208ENST00000554165 E9PLD3 99 aa6.88□□□□□ -1.31
CCDC88C-208ENST00000554165 KRTDAPP60985 99 aa6.88□□□□□ -1.31
CCDC88C-208ENST00000554165 ADAMTSL4-AS1Q5T5F5 129 aa6.88□□□□□ -1.31
CCDC88C-208ENST00000554165 FAM19A1Q7Z5A9 133 aa6.88□□□□□ -1.31
CCDC88C-208ENST00000554165 TTTY13Q9BZ97 58 aa6.88□□□□□ -1.31
CCDC88C-208ENST00000554165 IGKV2D-26A0A0A0MRZ7 120 aa6.87□□□□□ -1.31
CCDC88C-208ENST00000554165 PET117Q6UWS5 81 aa6.87□□□□□ -1.31
CCDC88C-208ENST00000554165 A0A0J9YXY3 114 aa6.86□□□□□ -1.31
CCDC88C-208ENST00000554165 NMUP48645 174 aa6.86□□□□□ -1.31
CCDC88C-208ENST00000554165 NPC2P61916 151 aa6.86□□□□□ -1.31
CCDC88C-208ENST00000554165 SOSTDC1Q6X4U4 206 aa6.86□□□□□ -1.31
CCDC88C-208ENST00000554165 TRBV10-3A0A0K0K1G6 114 aa6.85□□□□□ -1.31
CCDC88C-208ENST00000554165 LINC00587B1AMM8 73 aa6.85□□□□□ -1.31
CCDC88C-208ENST00000554165 LOC107984156A0A0G2JMH3 177 aa6.84□□□□□ -1.31
CCDC88C-208ENST00000554165 KRTAP13-2Q52LG2 175 aa6.84□□□□□ -1.31
CCDC88C-208ENST00000554165 ARL17AQ8IVW1 177 aa6.84□□□□□ -1.31
CCDC88C-208ENST00000554165 ATOH7Q8N100 152 aa6.84□□□□□ -1.31
CCDC88C-208ENST00000554165 LRP2P98164 4655 aa6.83□□□□□ -1.32
CCDC88C-208ENST00000554165 S100A1P23297 94 aa6.83□□□□□ -1.32
CCDC88C-208ENST00000554165 LITAFQ99732 161 aa6.83□□□□□ -1.32
CCDC88C-208ENST00000554165 HIGD2AQ9BW72 106 aa6.83□□□□□ -1.32
CCDC88C-208ENST00000554165 CRYGAP11844 174 aa6.82□□□□□ -1.32
CCDC88C-208ENST00000554165 RPL13AP40429 203 aaKnown RBP6.82□□□□□ -1.32
CCDC88C-208ENST00000554165 KCNQ1DNQ9H478 68 aa6.82□□□□□ -1.32
CCDC88C-208ENST00000554165 TMEM238LA0A1B0GVL6 79 aa6.81□□□□□ -1.32
CCDC88C-208ENST00000554165 ZNF815PA8K554 130 aa6.81□□□□□ -1.32
CCDC88C-208ENST00000554165 KRTAP4-16G5E9R7 235 aaPredicted RBP6.81□□□□□ -1.32
CCDC88C-208ENST00000554165 PRYO14603 147 aa6.81□□□□□ -1.32
CCDC88C-208ENST00000554165 SPRR1AP35321 89 aa6.81□□□□□ -1.32
CCDC88C-208ENST00000554165 ANKRD39Q53RE8 183 aa6.81□□□□□ -1.32
CCDC88C-208ENST00000554165 RNF213Q63HN8 5207 aa6.8□□□□□ -1.32
CCDC88C-208ENST00000554165 TSPAN13O95857 204 aa6.8□□□□□ -1.32
CCDC88C-208ENST00000554165 HIST3H2BBQ8N257 126 aa6.8□□□□□ -1.32
CCDC88C-208ENST00000554165 TYMSOSQ8TAI1 123 aa6.8□□□□□ -1.32
CCDC88C-208ENST00000554165 MIEN1Q9BRT3 115 aa6.8□□□□□ -1.32
CCDC88C-208ENST00000554165 DDTP30046 118 aa6.79□□□□□ -1.32
CCDC88C-208ENST00000554165 SPANXB1Q9NS25 103 aaPredicted RBP6.79□□□□□ -1.32
CCDC88C-208ENST00000554165 TRBV10-2A0A0K0K1G8 114 aa6.78□□□□□ -1.32
CCDC88C-208ENST00000554165 ETDCA0A1B0GVM5 59 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms