RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 DNAH2Q9P225 4427 aa1.62□□□□□ -2.15
LIMA1-210ENST00000552045 TCHHQ07283 1943 aa1.62□□□□□ -2.15
LIMA1-210ENST00000552045 NEBP20929 6669 aa1.61□□□□□ -2.15
LIMA1-210ENST00000552045 DNAH6Q9C0G6 4158 aa1.61□□□□□ -2.15
LIMA1-210ENST00000552045 RRAS2P62070 204 aaPredicted RBP1.61□□□□□ -2.15
LIMA1-210ENST00000552045 SYNE2Q8WXH0 6885 aaKnown RBP1.61□□□□□ -2.15
LIMA1-210ENST00000552045 K7EP13 123 aa1.6□□□□□ -2.15
LIMA1-210ENST00000552045 APOC1P02654 83 aa1.6□□□□□ -2.15
LIMA1-210ENST00000552045 GUCA1AP43080 201 aaPredicted RBP1.6□□□□□ -2.15
LIMA1-210ENST00000552045 SPCS2Q15005 226 aa1.6□□□□□ -2.15
LIMA1-210ENST00000552045 PLAC4Q8WY50 150 aa1.6□□□□□ -2.15
LIMA1-210ENST00000552045 DYNLRB1Q9NP97 96 aa1.6□□□□□ -2.15
LIMA1-210ENST00000552045 VPS13BQ7Z7G8 4022 aa1.6□□□□□ -2.15
LIMA1-210ENST00000552045 GPR98Q8WXG9 6306 aa1.6□□□□□ -2.15
LIMA1-210ENST00000552045 LRP1BQ9NZR2 4599 aa1.59□□□□□ -2.15
LIMA1-210ENST00000552045 EFCAB10A6NFE3 127 aa1.59□□□□□ -2.15
LIMA1-210ENST00000552045 LYNX1G3V0Z9 82 aa1.59□□□□□ -2.15
LIMA1-210ENST00000552045 FXYD1O00168 92 aa1.59□□□□□ -2.15
LIMA1-210ENST00000552045 SELENOWP63302 87 aa1.59□□□□□ -2.15
LIMA1-210ENST00000552045 ZNF56Q15929 161 aa1.59□□□□□ -2.15
LIMA1-210ENST00000552045 DEFB108BQ8NET1 73 aa1.59□□□□□ -2.15
LIMA1-210ENST00000552045 NDUFA12Q9UI09 145 aa1.59□□□□□ -2.15
LIMA1-210ENST00000552045 TEX49A0A1B0GTD5 131 aa1.58□□□□□ -2.16
LIMA1-210ENST00000552045 KRTAP20-1Q3LI63 56 aa1.58□□□□□ -2.16
LIMA1-210ENST00000552045 OR2T2Q6IF00 324 aa1.58□□□□□ -2.16
LIMA1-210ENST00000552045 ZNF720Q7Z2F6 126 aa1.58□□□□□ -2.16
LIMA1-210ENST00000552045 DEFB104AQ8WTQ1 72 aa1.58□□□□□ -2.16
LIMA1-210ENST00000552045 TSLPQ969D9 159 aa1.58□□□□□ -2.16
LIMA1-210ENST00000552045 ARL11Q969Q4 196 aa1.58□□□□□ -2.16
LIMA1-210ENST00000552045 LINC00470Q9BZP3 86 aa1.58□□□□□ -2.16
LIMA1-210ENST00000552045 PIRTP0C851 137 aa1.57□□□□□ -2.16
LIMA1-210ENST00000552045 SPINT3P49223 89 aa1.57□□□□□ -2.16
LIMA1-210ENST00000552045 SPANXN1Q5VSR9 72 aa1.57□□□□□ -2.16
LIMA1-210ENST00000552045 DEFB106AQ8N104 65 aa1.57□□□□□ -2.16
LIMA1-210ENST00000552045 KCNRGQ8N5I3 272 aa1.57□□□□□ -2.16
LIMA1-210ENST00000552045 IFI27L1Q96BM0 104 aa1.57□□□□□ -2.16
LIMA1-210ENST00000552045 CCDC167Q9P0B6 97 aa1.57□□□□□ -2.16
LIMA1-210ENST00000552045 ANKRD36A6QL64 1941 aa1.57□□□□□ -2.16
LIMA1-210ENST00000552045 DNAH5Q8TE73 4624 aa1.57□□□□□ -2.16
LIMA1-210ENST00000552045 DNAH17Q9UFH2 4485 aa1.56□□□□□ -2.16
LIMA1-210ENST00000552045 A0A1B0GV90 55 aa1.56□□□□□ -2.16
LIMA1-210ENST00000552045 LINC00587B1AMM8 73 aa1.56□□□□□ -2.16
LIMA1-210ENST00000552045 PKD1P98161 4303 aa1.56□□□□□ -2.16
LIMA1-210ENST00000552045 ATP6V1G2-DDX39BF2Z307 99 aa1.55□□□□□ -2.16
LIMA1-210ENST00000552045 H0YGG7 62 aa1.55□□□□□ -2.16
LIMA1-210ENST00000552045 GNG7O60262 68 aa1.55□□□□□ -2.16
LIMA1-210ENST00000552045 SMR3BP02814 79 aaPredicted RBP1.55□□□□□ -2.16
LIMA1-210ENST00000552045 KLKP1Q107X0 134 aa1.55□□□□□ -2.16
LIMA1-210ENST00000552045 TSKUQ8WUA8 353 aa1.55□□□□□ -2.16
LIMA1-210ENST00000552045 DPH3Q96FX2 82 aa1.55□□□□□ -2.16
LIMA1-210ENST00000552045 CGREF1Q99674 301 aa1.55□□□□□ -2.16
LIMA1-210ENST00000552045 MACF1Q9UPN3 7388 aaKnown RBP1.55□□□□□ -2.16
LIMA1-210ENST00000552045 TCRBV3S1A0A5B6 114 aa1.54□□□□□ -2.16
LIMA1-210ENST00000552045 EMX2Q04743 252 aa1.54□□□□□ -2.16
LIMA1-210ENST00000552045 HMCN1Q96RW7 5635 aa1.53□□□□□ -2.16
LIMA1-210ENST00000552045 TRAV12-2A0A075B6T6 113 aa1.53□□□□□ -2.16
LIMA1-210ENST00000552045 IL5P05113 134 aa1.53□□□□□ -2.16
LIMA1-210ENST00000552045 PRB3Q04118 309 aaPredicted RBP1.53□□□□□ -2.16
LIMA1-210ENST00000552045 RPL13AP3Q6NVV1 102 aa1.53□□□□□ -2.16
LIMA1-210ENST00000552045 SLC48A1Q6P1K1 146 aa1.53□□□□□ -2.16
LIMA1-210ENST00000552045 C1orf54Q8WWF1 131 aa1.53□□□□□ -2.16
LIMA1-210ENST00000552045 PROK2Q9HC23 129 aa1.53□□□□□ -2.16
LIMA1-210ENST00000552045 TMEM242Q9NWH2 141 aa1.53□□□□□ -2.16
LIMA1-210ENST00000552045 SNRPFP62306 86 aaKnown RBP1.52□□□□□ -2.17
LIMA1-210ENST00000552045 BTG2P78543 158 aa1.52□□□□□ -2.17
LIMA1-210ENST00000552045 SPINK13Q1W4C9 94 aa1.52□□□□□ -2.17
LIMA1-210ENST00000552045 SPINK9Q5DT21 86 aa1.52□□□□□ -2.17
LIMA1-210ENST00000552045 CYP2G1PQ6ZSU1 146 aa1.52□□□□□ -2.17
LIMA1-210ENST00000552045 TMEM141Q96I45 108 aa1.52□□□□□ -2.17
LIMA1-210ENST00000552045 KRTAP4-1Q9BYQ7 146 aa1.52□□□□□ -2.17
LIMA1-210ENST00000552045 FAT3Q8TDW7 4589 aa1.51□□□□□ -2.17
LIMA1-210ENST00000552045 FAM25AB3EWG3 89 aa1.51□□□□□ -2.17
LIMA1-210ENST00000552045 FAM25CB3EWG5 89 aa1.51□□□□□ -2.17
LIMA1-210ENST00000552045 FAM25GB3EWG6 89 aa1.51□□□□□ -2.17
LIMA1-210ENST00000552045 H3BSH0 61 aa1.51□□□□□ -2.17
LIMA1-210ENST00000552045 NPC2P61916 151 aa1.51□□□□□ -2.17
LIMA1-210ENST00000552045 C2orf88Q9BSF0 95 aa1.51□□□□□ -2.17
LIMA1-210ENST00000552045 TMEM14BQ9NUH8 114 aa1.51□□□□□ -2.17
LIMA1-210ENST00000552045 TRAV12-3A0A0B4J271 114 aa1.5□□□□□ -2.17
LIMA1-210ENST00000552045 H3BUX3 64 aa1.5□□□□□ -2.17
LIMA1-210ENST00000552045 DLEU1O43261 78 aa1.5□□□□□ -2.17
LIMA1-210ENST00000552045 PIPP12273 146 aaPredicted RBP1.5□□□□□ -2.17
LIMA1-210ENST00000552045 CCL8P80075 99 aa1.5□□□□□ -2.17
LIMA1-210ENST00000552045 PPP1R1CQ8WVI7 109 aa1.5□□□□□ -2.17
LIMA1-210ENST00000552045 SPTSSAQ969W0 71 aa1.5□□□□□ -2.17
LIMA1-210ENST00000552045 COA4Q9NYJ1 87 aa1.5□□□□□ -2.17
LIMA1-210ENST00000552045 DOCK11Q5JSL3 2073 aa1.5□□□□□ -2.17
LIMA1-210ENST00000552045 LRP1Q07954 4544 aaKnown RBP1.49□□□□□ -2.17
LIMA1-210ENST00000552045 FXYD6P3P58550 94 aa1.49□□□□□ -2.17
LIMA1-210ENST00000552045 C9orf116Q5BN46 136 aaPredicted RBP1.49□□□□□ -2.17
LIMA1-210ENST00000552045 UBE2DNLQ8IWF7 75 aa1.49□□□□□ -2.17
LIMA1-210ENST00000552045 PDCD10Q9BUL8 212 aa1.49□□□□□ -2.17
LIMA1-210ENST00000552045 BET1LQ9NYM9 111 aa1.49□□□□□ -2.17
LIMA1-210ENST00000552045 TNXBP22105 4242 aa1.49□□□□□ -2.17
LIMA1-210ENST00000552045 NDUFB6O95139 128 aa1.48□□□□□ -2.17
LIMA1-210ENST00000552045 S100A1P23297 94 aa1.48□□□□□ -2.17
LIMA1-210ENST00000552045 MIF4GDA9UHW6 222 aaKnown RBP1.47□□□□□ -2.17
LIMA1-210ENST00000552045 SNCGO76070 127 aa1.47□□□□□ -2.17
LIMA1-210ENST00000552045 IFNA17P01571 189 aa1.47□□□□□ -2.17
LIMA1-210ENST00000552045 ZNF137PP52743 207 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 149.3 ms