RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 OCIAD2Q56VL3 154 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 C1orf134Q5TEV5 83 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 LYPD5Q6UWN5 251 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 LINC00322Q6ZN03 302 aaPredicted RBP0.92□□□□□ -2.26
LIMA1-209ENST00000552008 Q6ZTI0 123 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 SBSPONQ8IVN8 264 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 C1orf158Q8N1D5 194 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 C18orf32Q8TCD1 76 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 SMCR5Q8TEV8 140 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 TOMM6Q96B49 74 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 TOMM7Q9P0U1 55 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 HIGD1BQ9P298 99 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 SPCS1Q9Y6A9 102 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 WDFY3Q8IZQ1 3526 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 SPTBP11277 2137 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 PRRC2CQ9Y520 2896 aaKnown RBP0.92□□□□□ -2.26
LIMA1-209ENST00000552008 MAP1BP46821 2468 aaKnown RBP0.92□□□□□ -2.26
LIMA1-209ENST00000552008 KIAA1549Q9HCM3 1950 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 SPTBN4Q9H254 2564 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 EPG5Q9HCE0 2579 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 PTPRQQ9UMZ3 2332 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 NBEAQ8NFP9 2946 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 TLN1Q9Y490 2541 aaKnown RBP0.91□□□□□ -2.26
LIMA1-209ENST00000552008 CFAP47Q6ZTR5 3102 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 CACNA1GO43497 2377 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 ATMQ13315 3056 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 FREM3P0C091 2139 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 FRYQ5TBA9 3013 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 EXPH5Q8NEV8 1989 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 IGHV3-64A0A075B6Q5 118 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 TRAV26-2A0A0B4J265 109 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 A0A0G2JQZ4 141 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 LOC107984640A0A0U1RRK4 108 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 A0A1B0GW54 56 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 A0A1B0GX51 115 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 ZNF815PA8K554 130 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 IBA57-AS1B1ANH7 110 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 H0YGX0 51 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 H3BT86 120 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 K7EIL1 84 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 K7EP34 96 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 ATOX1O00244 68 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 DEFB4AO15263 64 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 TIMM17BO60830 172 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 NDUFC2O95298 119 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 IGHV3-30P01768 117 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 IGHV3-33P01772 117 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 IGLC3P0DOY3 106 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 IGHV3-30-5P0DP03 117 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 COX8AP10176 69 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 ADCYAP1P18509 176 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 POLR2KP53803 58 aaKnown RBP0.91□□□□□ -2.26
LIMA1-209ENST00000552008 KRTAP12-1P59990 96 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 ATXN8Q156A1 80 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 C12orf74Q32Q52 190 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 LINC01556Q5JQF7 62 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 BVES-AS1Q5T3Y7 98 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 C1orf195Q5TG92 126 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 ATP5EP2Q5VTU8 51 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 LINC00269Q8N2A0 174 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 COX7B2Q8TF08 81 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 PPDPFLQ8WWR9 84 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 CARD19Q96LW7 228 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 SNHG12Q9BXW3 62 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 TTTY13Q9BZ97 58 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 CDC42SE2Q9NRR3 84 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 UBE2D4Q9Y2X8 147 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 USP24Q9UPU5 2620 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 KMT2BQ9UMN6 2715 aaPredicted RBP0.91□□□□□ -2.26
LIMA1-209ENST00000552008 ASPMQ8IZT6 3477 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 MGAQ8IWI9 3026 aa0.91□□□□□ -2.26
LIMA1-209ENST00000552008 SNRNP200O75643 2136 aaKnown RBP0.91□□□□□ -2.26
LIMA1-209ENST00000552008 ZZEF1O43149 2961 aa0.9□□□□□ -2.26
LIMA1-209ENST00000552008 BOD1L1Q8NFC6 3051 aa0.9□□□□□ -2.26
LIMA1-209ENST00000552008 NCOA6Q14686 2063 aaPredicted RBP0.9□□□□□ -2.26
LIMA1-209ENST00000552008 SPEGQ15772 3267 aa0.9□□□□□ -2.26
LIMA1-209ENST00000552008 CHD6Q8TD26 2715 aa0.9□□□□□ -2.26
LIMA1-209ENST00000552008 MED13Q9UHV7 2174 aa0.9□□□□□ -2.26
LIMA1-209ENST00000552008 COL6A6A6NMZ7 2263 aa0.9□□□□□ -2.26
LIMA1-209ENST00000552008 TPRP12270 2363 aaKnown RBP0.9□□□□□ -2.27
LIMA1-209ENST00000552008 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.9□□□□□ -2.27
LIMA1-209ENST00000552008 A0A096LPF7 62 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 IGKV2D-26A0A0A0MRZ7 120 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 TRBV30A0A0K0K1B3 111 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 NBDYA0A0U1RRE5 68 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 LINC00959A0A1B0GUT2 108 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 A0A1W2PPM0 123 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 IGKV2-29A2NJV5 120 aaPredicted RBP0.9□□□□□ -2.27
LIMA1-209ENST00000552008 LINC01546A6NGU7 62 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 IGIPA6NJ69 53 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 F8WEM9 126 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 UQCRQO14949 82 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 BCE1O60756 84 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 C3orf79P0CE67 100 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 DEFB1P60022 68 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 HIST1H4AP62805 103 aaKnown RBP0.9□□□□□ -2.27
LIMA1-209ENST00000552008 RPS28P62857 69 aaKnown RBP0.9□□□□□ -2.27
LIMA1-209ENST00000552008 UBE2BP63146 152 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 SPAG11BQ08648 103 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 ESRGQ1W209 222 aa0.9□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms