RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 CDC42SE1Q9NRR8 79 aa6.47□□□□□ -1.37
PTCH1-220ENST00000550136 MUC4Q99102 2169 aa6.47□□□□□ -1.37
PTCH1-220ENST00000550136 IGHV3-72A0A0B4J1Y9 119 aa6.47□□□□□ -1.37
PTCH1-220ENST00000550136 Q75L30 129 aa6.47□□□□□ -1.37
PTCH1-220ENST00000550136 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.46□□□□□ -1.37
PTCH1-220ENST00000550136 A0A096LNT2 108 aa6.46□□□□□ -1.37
PTCH1-220ENST00000550136 TENM1Q9UKZ4 2725 aa6.46□□□□□ -1.38
PTCH1-220ENST00000550136 Q8N814 137 aa6.46□□□□□ -1.38
PTCH1-220ENST00000550136 PLCE1Q9P212 2302 aa6.46□□□□□ -1.38
PTCH1-220ENST00000550136 IGLV11-55A0A075B6I3 123 aa6.45□□□□□ -1.38
PTCH1-220ENST00000550136 LCE6AA0A183 80 aa6.45□□□□□ -1.38
PTCH1-220ENST00000550136 FAM229AH3BQW9 127 aa6.45□□□□□ -1.38
PTCH1-220ENST00000550136 NOTCH1P46531 2555 aa6.45□□□□□ -1.38
PTCH1-220ENST00000550136 CCL3L1P16619 93 aa6.45□□□□□ -1.38
PTCH1-220ENST00000550136 MP68P56378 58 aa6.45□□□□□ -1.38
PTCH1-220ENST00000550136 PDE6GP18545 87 aa6.44□□□□□ -1.38
PTCH1-220ENST00000550136 DSCR9P59020 149 aa6.44□□□□□ -1.38
PTCH1-220ENST00000550136 FAM74A4Q5TZK3 123 aa6.44□□□□□ -1.38
PTCH1-220ENST00000550136 MOBPQ13875 183 aa6.44□□□□□ -1.38
PTCH1-220ENST00000550136 C9orf66Q5T8R8 295 aa6.44□□□□□ -1.38
PTCH1-220ENST00000550136 IGHV4-30-2A0A087WSY4 118 aa6.43□□□□□ -1.38
PTCH1-220ENST00000550136 A6NED7 52 aa6.43□□□□□ -1.38
PTCH1-220ENST00000550136 KLLNB2CW77 178 aa6.43□□□□□ -1.38
PTCH1-220ENST00000550136 SMIM1B2RUZ4 78 aa6.43□□□□□ -1.38
PTCH1-220ENST00000550136 M0R2N4 97 aa6.43□□□□□ -1.38
PTCH1-220ENST00000550136 LY6HO94772 140 aa6.43□□□□□ -1.38
PTCH1-220ENST00000550136 PRB3Q04118 309 aaPredicted RBP6.43□□□□□ -1.38
PTCH1-220ENST00000550136 Q8N9P0 234 aaPredicted RBP6.43□□□□□ -1.38
PTCH1-220ENST00000550136 PRR15LQ9BU68 103 aa6.43□□□□□ -1.38
PTCH1-220ENST00000550136 CDC42SE2Q9NRR3 84 aa6.43□□□□□ -1.38
PTCH1-220ENST00000550136 IGHV4-31P0DP07 118 aa6.43□□□□□ -1.38
PTCH1-220ENST00000550136 KIAA0087Q14695 138 aa6.43□□□□□ -1.38
PTCH1-220ENST00000550136 C22orf34Q6ZV56 151 aa6.43□□□□□ -1.38
PTCH1-220ENST00000550136 ROS1P08922 2347 aa6.42□□□□□ -1.38
PTCH1-220ENST00000550136 IGHV1-3A0A0C4DH29 117 aa6.42□□□□□ -1.38
PTCH1-220ENST00000550136 IGKV3-15P01624 115 aa6.42□□□□□ -1.38
PTCH1-220ENST00000550136 C19orf54Q5BKX5 351 aa6.42□□□□□ -1.38
PTCH1-220ENST00000550136 NTM-AS1Q6ZSK4 140 aa6.42□□□□□ -1.38
PTCH1-220ENST00000550136 ZCCHC13Q8WW36 166 aaKnown RBP6.42□□□□□ -1.38
PTCH1-220ENST00000550136 C9orf116Q5BN46 136 aaPredicted RBP6.42□□□□□ -1.38
PTCH1-220ENST00000550136 SCXQ7RTU7 201 aa6.42□□□□□ -1.38
PTCH1-220ENST00000550136 RNF5Q99942 180 aa6.42□□□□□ -1.38
PTCH1-220ENST00000550136 COX6A2Q02221 97 aa6.41□□□□□ -1.38
PTCH1-220ENST00000550136 DEFB108BQ8NET1 73 aa6.41□□□□□ -1.38
PTCH1-220ENST00000550136 LOC101927531A0A1B0GV80 90 aa6.4□□□□□ -1.38
PTCH1-220ENST00000550136 IGHV3OR16-8A0A075B7F1 116 aa6.4□□□□□ -1.39
PTCH1-220ENST00000550136 IGHV1-2P23083 117 aa6.4□□□□□ -1.39
PTCH1-220ENST00000550136 KLK9Q9UKQ9 250 aa6.4□□□□□ -1.39
PTCH1-220ENST00000550136 IGHV3-23P01764 117 aa6.39□□□□□ -1.39
PTCH1-220ENST00000550136 IGKV4-1P06312 121 aa6.39□□□□□ -1.39
PTCH1-220ENST00000550136 CNEP1R1Q8N9A8 125 aa6.39□□□□□ -1.39
PTCH1-220ENST00000550136 CHCHD7Q9BUK0 85 aa6.39□□□□□ -1.39
PTCH1-220ENST00000550136 NBEAL2Q6ZNJ1 2754 aa6.39□□□□□ -1.39
PTCH1-220ENST00000550136 CCL18P55774 89 aa6.39□□□□□ -1.39
PTCH1-220ENST00000550136 SVEP1Q4LDE5 3571 aa6.39□□□□□ -1.39
PTCH1-220ENST00000550136 IGHV3-66A0A0C4DH42 116 aa6.38□□□□□ -1.39
PTCH1-220ENST00000550136 LINC00242Q5T6M2 205 aa6.38□□□□□ -1.39
PTCH1-220ENST00000550136 C18orf65Q6ZTR6 163 aa6.38□□□□□ -1.39
PTCH1-220ENST00000550136 TRBV6-4A0A1B0GX49 114 aa6.38□□□□□ -1.39
PTCH1-220ENST00000550136 C3orf84H3BNL1 204 aa6.38□□□□□ -1.39
PTCH1-220ENST00000550136 H0Y9J4 135 aa6.37□□□□□ -1.39
PTCH1-220ENST00000550136 RNASE1P07998 156 aaKnown RBP6.37□□□□□ -1.39
PTCH1-220ENST00000550136 ELOF1P60002 83 aaKnown RBP6.37□□□□□ -1.39
PTCH1-220ENST00000550136 NANOS2P60321 138 aaKnown RBP6.37□□□□□ -1.39
PTCH1-220ENST00000550136 PRM2P04554 102 aa6.36□□□□□ -1.39
PTCH1-220ENST00000550136 IGHV3-35A0A0C4DH35 117 aa6.36□□□□□ -1.39
PTCH1-220ENST00000550136 KRTAP9-2Q9BYQ4 174 aa6.36□□□□□ -1.39
PTCH1-220ENST00000550136 IGHV3OR16-12A0A075B7B8 117 aa6.35□□□□□ -1.39
PTCH1-220ENST00000550136 IGHV3-49A0A0A0MS15 119 aa6.35□□□□□ -1.39
PTCH1-220ENST00000550136 IGLV1-44P01699 117 aa6.35□□□□□ -1.39
PTCH1-220ENST00000550136 IGHV1-8P0DP01 117 aa6.35□□□□□ -1.39
PTCH1-220ENST00000550136 LINC01006Q8NI28 216 aa6.35□□□□□ -1.39
PTCH1-220ENST00000550136 PRAC1Q96KF2 57 aa6.35□□□□□ -1.39
PTCH1-220ENST00000550136 LINC00467Q9BRT7 94 aa6.35□□□□□ -1.39
PTCH1-220ENST00000550136 IGLV3-9A0A075B6K5 115 aa6.35□□□□□ -1.39
PTCH1-220ENST00000550136 NDUFB1O75438 58 aa6.35□□□□□ -1.39
PTCH1-220ENST00000550136 MUC7Q8TAX7 377 aa6.35□□□□□ -1.39
PTCH1-220ENST00000550136 IGHV3-16A0A0C4DH30 117 aa6.34□□□□□ -1.39
PTCH1-220ENST00000550136 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.34□□□□□ -1.39
PTCH1-220ENST00000550136 Q9BRP9 147 aa6.34□□□□□ -1.39
PTCH1-220ENST00000550136 PRKDCP78527 4128 aaKnown RBP6.34□□□□□ -1.4
PTCH1-220ENST00000550136 IGLV4-60A0A075B6I1 120 aa6.33□□□□□ -1.4
PTCH1-220ENST00000550136 IGHV3OR16-13A0A075B7E8 117 aa6.33□□□□□ -1.4
PTCH1-220ENST00000550136 IGHV7-81A0A0B4J1V7 117 aa6.33□□□□□ -1.4
PTCH1-220ENST00000550136 IGHV3-74A0A0B4J1X5 117 aa6.33□□□□□ -1.4
PTCH1-220ENST00000550136 H3BQ85 93 aa6.33□□□□□ -1.4
PTCH1-220ENST00000550136 IGLV1-47P01700 117 aa6.33□□□□□ -1.4
PTCH1-220ENST00000550136 LINC00158P58513 81 aa6.33□□□□□ -1.4
PTCH1-220ENST00000550136 C11orf71Q6IPW1 123 aa6.33□□□□□ -1.4
PTCH1-220ENST00000550136 COX7B2Q8TF08 81 aa6.33□□□□□ -1.4
PTCH1-220ENST00000550136 B9D2Q9BPU9 175 aa6.33□□□□□ -1.4
PTCH1-220ENST00000550136 TRRAPQ9Y4A5 3859 aa6.33□□□□□ -1.4
PTCH1-220ENST00000550136 RYR3Q15413 4870 aa6.33□□□□□ -1.4
PTCH1-220ENST00000550136 PLA2G1BP04054 148 aaKnown RBP6.32□□□□□ -1.4
PTCH1-220ENST00000550136 FAM30AQ9NZY2 134 aa6.32□□□□□ -1.4
PTCH1-220ENST00000550136 VWFP04275 2813 aa6.32□□□□□ -1.4
PTCH1-220ENST00000550136 KRTAP9-6A0A140TA67 174 aa6.32□□□□□ -1.4
PTCH1-220ENST00000550136 BSPH1Q075Z2 132 aa6.32□□□□□ -1.4
PTCH1-220ENST00000550136 PRR4Q16378 134 aa6.32□□□□□ -1.4
PTCH1-220ENST00000550136 DEFB114Q30KQ6 69 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms