RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 SND1-IT1Q9HBX3 110 aa7.74□□□□□ -1.17
RTN3-213ENST00000543552 BAGE3Q86Y29 109 aa7.73□□□□□ -1.17
RTN3-213ENST00000543552 LINC00587B1AMM8 73 aa7.72□□□□□ -1.17
RTN3-213ENST00000543552 SMIM6P0DI80 62 aa7.72□□□□□ -1.17
RTN3-213ENST00000543552 VPREB1P12018 145 aa7.72□□□□□ -1.17
RTN3-213ENST00000543552 TMEM126AQ9H061 195 aa7.72□□□□□ -1.17
RTN3-213ENST00000543552 MUC2Q02817 5179 aa7.71□□□□□ -1.17
RTN3-213ENST00000543552 IGKV2D-26A0A0A0MRZ7 120 aa7.71□□□□□ -1.18
RTN3-213ENST00000543552 C11orf86A6NJI1 115 aa7.71□□□□□ -1.18
RTN3-213ENST00000543552 PMCHL1Q16048 86 aa7.71□□□□□ -1.18
RTN3-213ENST00000543552 FAM19A1Q7Z5A9 133 aa7.71□□□□□ -1.18
RTN3-213ENST00000543552 URB1-AS1Q96HZ7 61 aa7.71□□□□□ -1.18
RTN3-213ENST00000543552 A0A0U1RQV1 116 aa7.7□□□□□ -1.18
RTN3-213ENST00000543552 PRLHP81277 87 aa7.7□□□□□ -1.18
RTN3-213ENST00000543552 SVBPQ8N300 66 aa7.7□□□□□ -1.18
RTN3-213ENST00000543552 LINC00304Q8N9R0 145 aa7.7□□□□□ -1.18
RTN3-213ENST00000543552 ZNF625Q96I27 306 aaPredicted RBP7.7□□□□□ -1.18
RTN3-213ENST00000543552 CHTOPQ9Y3Y2 248 aaKnown RBP7.7□□□□□ -1.18
RTN3-213ENST00000543552 APOC3P02656 99 aa7.69□□□□□ -1.18
RTN3-213ENST00000543552 ANAPC11Q9NYG5 84 aa7.69□□□□□ -1.18
RTN3-213ENST00000543552 TMEM238C9JI98 176 aa7.68□□□□□ -1.18
RTN3-213ENST00000543552 LINC00158P58513 81 aa7.68□□□□□ -1.18
RTN3-213ENST00000543552 KRTAP13-2Q52LG2 175 aa7.68□□□□□ -1.18
RTN3-213ENST00000543552 LCE2DQ5TA82 110 aaPredicted RBP7.68□□□□□ -1.18
RTN3-213ENST00000543552 TRAV12-1A0A0B4J245 112 aa7.67□□□□□ -1.18
RTN3-213ENST00000543552 M0R378 163 aa7.67□□□□□ -1.18
RTN3-213ENST00000543552 AKR1D1P51857 326 aa7.67□□□□□ -1.18
RTN3-213ENST00000543552 CBLN2Q8IUK8 224 aa7.67□□□□□ -1.18
RTN3-213ENST00000543552 CHCHD1Q96BP2 118 aaKnown RBP7.67□□□□□ -1.18
RTN3-213ENST00000543552 TMEM223A0PJW6 202 aa7.65□□□□□ -1.18
RTN3-213ENST00000543552 IFI27L1Q96BM0 104 aa7.65□□□□□ -1.18
RTN3-213ENST00000543552 HIGD2AQ9BW72 106 aa7.65□□□□□ -1.18
RTN3-213ENST00000543552 ZNF706Q9Y5V0 76 aaPredicted RBP7.65□□□□□ -1.18
RTN3-213ENST00000543552 HERV-K104P63124 156 aa7.64□□□□□ -1.19
RTN3-213ENST00000543552 PLEKHB2Q96CS7 222 aa7.64□□□□□ -1.19
RTN3-213ENST00000543552 MEIG1Q5JSS6 88 aa7.63□□□□□ -1.19
RTN3-213ENST00000543552 Q8NDZ9 215 aa7.63□□□□□ -1.19
RTN3-213ENST00000543552 A0A0U1RRA0 63 aa7.62□□□□□ -1.19
RTN3-213ENST00000543552 PRYO14603 147 aa7.62□□□□□ -1.19
RTN3-213ENST00000543552 HSBP1O75506 76 aa7.62□□□□□ -1.19
RTN3-213ENST00000543552 BOD1L2Q8IYS8 172 aa7.62□□□□□ -1.19
RTN3-213ENST00000543552 MAP1LC3CQ9BXW4 147 aa7.62□□□□□ -1.19
RTN3-213ENST00000543552 SMIM13P0DJ93 91 aa7.61□□□□□ -1.19
RTN3-213ENST00000543552 SPAG11AQ6PDA7 123 aa7.61□□□□□ -1.19
RTN3-213ENST00000543552 RETNLBQ9BQ08 111 aa7.61□□□□□ -1.19
RTN3-213ENST00000543552 MYMXA0A1B0GTQ4 84 aa7.6□□□□□ -1.19
RTN3-213ENST00000543552 PCP4P48539 62 aa7.6□□□□□ -1.19
RTN3-213ENST00000543552 TPRXLQ17RH7 258 aa7.6□□□□□ -1.19
RTN3-213ENST00000543552 SPRR4Q96PI1 79 aa7.6□□□□□ -1.19
RTN3-213ENST00000543552 CDIP1Q9H305 208 aa7.6□□□□□ -1.19
RTN3-213ENST00000543552 C4orf48Q5BLP8 95 aa7.59□□□□□ -1.19
RTN3-213ENST00000543552 MIR7-3HGQ8N6C7 128 aa7.59□□□□□ -1.19
RTN3-213ENST00000543552 LINC00337Q8N6G1 96 aa7.59□□□□□ -1.19
RTN3-213ENST00000543552 NDUFA12Q9UI09 145 aa7.59□□□□□ -1.19
RTN3-213ENST00000543552 IGLV7-46A0A075B6I9 117 aa7.58□□□□□ -1.2
RTN3-213ENST00000543552 ETDCA0A1B0GVM5 59 aa7.58□□□□□ -1.2
RTN3-213ENST00000543552 NCR3O14931 201 aa7.58□□□□□ -1.2
RTN3-213ENST00000543552 C3orf22Q8N5N4 141 aa7.58□□□□□ -1.2
RTN3-213ENST00000543552 YPEL4Q96NS1 127 aa7.58□□□□□ -1.2
RTN3-213ENST00000543552 PLNP26678 52 aa7.57□□□□□ -1.2
RTN3-213ENST00000543552 KCNQ1DNQ9H478 68 aa7.57□□□□□ -1.2
RTN3-213ENST00000543552 H0Y8G0 127 aa7.56□□□□□ -1.2
RTN3-213ENST00000543552 LEPROTL1O95214 131 aa7.56□□□□□ -1.2
RTN3-213ENST00000543552 SPRR1AP35321 89 aa7.56□□□□□ -1.2
RTN3-213ENST00000543552 C21orf62-AS1Q17RA5 79 aa7.56□□□□□ -1.2
RTN3-213ENST00000543552 FAM19A2Q8N3H0 131 aa7.56□□□□□ -1.2
RTN3-213ENST00000543552 HERVK_113P61574 105 aa7.55□□□□□ -1.2
RTN3-213ENST00000543552 TRBV10-3A0A0K0K1G6 114 aa7.54□□□□□ -1.2
RTN3-213ENST00000543552 A6NJY4 79 aa7.54□□□□□ -1.2
RTN3-213ENST00000543552 FP248Q71RG6 208 aaPredicted RBP7.54□□□□□ -1.2
RTN3-213ENST00000543552 MIEN1Q9BRT3 115 aa7.54□□□□□ -1.2
RTN3-213ENST00000543552 HSPB8Q9UJY1 196 aa7.54□□□□□ -1.2
RTN3-213ENST00000543552 TRBV10-2A0A0K0K1G8 114 aa7.53□□□□□ -1.2
RTN3-213ENST00000543552 LEPROTO15243 131 aa7.53□□□□□ -1.2
RTN3-213ENST00000543552 NMUP48645 174 aa7.53□□□□□ -1.2
RTN3-213ENST00000543552 PPDPFQ9H3Y8 114 aa7.53□□□□□ -1.2
RTN3-213ENST00000543552 KRTAP4-16G5E9R7 235 aaPredicted RBP7.52□□□□□ -1.21
RTN3-213ENST00000543552 Q8NBF4 154 aa7.52□□□□□ -1.21
RTN3-213ENST00000543552 SMCR5Q8TEV8 140 aa7.52□□□□□ -1.21
RTN3-213ENST00000543552 SPANXB1Q9NS25 103 aaPredicted RBP7.52□□□□□ -1.21
RTN3-213ENST00000543552 LOC107984156A0A0G2JMH3 177 aa7.51□□□□□ -1.21
RTN3-213ENST00000543552 A0A1B0GV90 55 aa7.51□□□□□ -1.21
RTN3-213ENST00000543552 J3QQQ9 107 aa7.51□□□□□ -1.21
RTN3-213ENST00000543552 SERF1AO75920 110 aa7.51□□□□□ -1.21
RTN3-213ENST00000543552 DPM2O94777 84 aa7.51□□□□□ -1.21
RTN3-213ENST00000543552 SPINK1P00995 79 aa7.51□□□□□ -1.21
RTN3-213ENST00000543552 TRGC2P03986 189 aa7.51□□□□□ -1.21
RTN3-213ENST00000543552 DDTP30046 118 aa7.51□□□□□ -1.21
RTN3-213ENST00000543552 LINC00483Q53H64 154 aa7.51□□□□□ -1.21
RTN3-213ENST00000543552 ARL17AQ8IVW1 177 aa7.51□□□□□ -1.21
RTN3-213ENST00000543552 LGALS3P17931 250 aaKnown RBP7.5□□□□□ -1.21
RTN3-213ENST00000543552 TSPEAR-AS2P59090 65 aa7.5□□□□□ -1.21
RTN3-213ENST00000543552 B5MCH6 92 aa7.49□□□□□ -1.21
RTN3-213ENST00000543552 S100A7L2Q5SY68 101 aa7.49□□□□□ -1.21
RTN3-213ENST00000543552 DAND5Q8N907 189 aa7.49□□□□□ -1.21
RTN3-213ENST00000543552 MUC17Q685J3 4493 aa7.49□□□□□ -1.21
RTN3-213ENST00000543552 FAT4Q6V0I7 4981 aa7.48□□□□□ -1.21
RTN3-213ENST00000543552 C5orf52A6NGY3 159 aa7.48□□□□□ -1.21
RTN3-213ENST00000543552 NDUFC2O95298 119 aa7.48□□□□□ -1.21
RTN3-213ENST00000543552 IGKCP01834 107 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms