RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 TIMM17AQ99595 171 aa3.34□□□□□ -1.87
CLIP1-217ENST00000543205 OPRPNQ99935 248 aaPredicted RBP3.34□□□□□ -1.87
CLIP1-217ENST00000543205 IGLV8-61A0A075B6I0 122 aa3.34□□□□□ -1.88
CLIP1-217ENST00000543205 LRCOL1A6NCL2 159 aa3.34□□□□□ -1.88
CLIP1-217ENST00000543205 IFITM10A6NMD0 228 aa3.34□□□□□ -1.88
CLIP1-217ENST00000543205 C1orf196B1AJZ1 125 aa3.34□□□□□ -1.88
CLIP1-217ENST00000543205 LECT2O14960 151 aa3.34□□□□□ -1.88
CLIP1-217ENST00000543205 CCL25O15444 150 aa3.34□□□□□ -1.88
CLIP1-217ENST00000543205 S100A2P29034 98 aa3.34□□□□□ -1.88
CLIP1-217ENST00000543205 XCL1P47992 114 aa3.34□□□□□ -1.88
CLIP1-217ENST00000543205 RPS28P62857 69 aaKnown RBP3.34□□□□□ -1.88
CLIP1-217ENST00000543205 COA6Q5JTJ3 125 aaKnown RBP3.34□□□□□ -1.88
CLIP1-217ENST00000543205 CHCHD1Q96BP2 118 aaKnown RBP3.34□□□□□ -1.88
CLIP1-217ENST00000543205 TMEM126AQ9H061 195 aa3.34□□□□□ -1.88
CLIP1-217ENST00000543205 SND1-IT1Q9HBX3 110 aa3.34□□□□□ -1.88
CLIP1-217ENST00000543205 A0A1B0GVY2 172 aa3.33□□□□□ -1.88
CLIP1-217ENST00000543205 IGIPA6NJ69 53 aa3.33□□□□□ -1.88
CLIP1-217ENST00000543205 NDUFC2O95298 119 aa3.33□□□□□ -1.88
CLIP1-217ENST00000543205 SMIM6P0DI80 62 aa3.33□□□□□ -1.88
CLIP1-217ENST00000543205 PMCHL1Q16048 86 aa3.33□□□□□ -1.88
CLIP1-217ENST00000543205 C14orf177Q52M58 125 aa3.33□□□□□ -1.88
CLIP1-217ENST00000543205 SPATA12Q7Z6I5 190 aa3.33□□□□□ -1.88
CLIP1-217ENST00000543205 Q8N814 137 aa3.33□□□□□ -1.88
CLIP1-217ENST00000543205 PLEKHB2Q96CS7 222 aa3.33□□□□□ -1.88
CLIP1-217ENST00000543205 KIAA1109Q2LD37 5005 aa3.33□□□□□ -1.88
CLIP1-217ENST00000543205 HBDP02042 147 aa3.32□□□□□ -1.88
CLIP1-217ENST00000543205 KRTAP26-1Q6PEX3 210 aa3.32□□□□□ -1.88
CLIP1-217ENST00000543205 FAM104AQ969W3 186 aa3.32□□□□□ -1.88
CLIP1-217ENST00000543205 A0A1B0GX51 115 aa3.32□□□□□ -1.88
CLIP1-217ENST00000543205 NDUFA6P56556 154 aa3.32□□□□□ -1.88
CLIP1-217ENST00000543205 WFDC2Q14508 124 aa3.32□□□□□ -1.88
CLIP1-217ENST00000543205 C7orf33Q8WU49 177 aa3.32□□□□□ -1.88
CLIP1-217ENST00000543205 AMELXQ99217 191 aa3.32□□□□□ -1.88
CLIP1-217ENST00000543205 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.31□□□□□ -1.88
CLIP1-217ENST00000543205 C16orf90A8MZG2 172 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 COX7A2LO14548 114 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 SERF1AO75920 110 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 ZC2HC1BQ5TFG8 222 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 KRTAP5-11Q6L8G4 156 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 A0A096LNJ9 63 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 IGHV1-58A0A0C4DH39 117 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 HIST1H2BKO60814 126 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 HIST1H2BJP06899 126 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 SCGB1C2P0DMR2 95 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 HIST1H2BOP23527 126 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 HIST1H2BBP33778 126 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 FUSP35637 526 aaKnown RBP eCLIP3.31□□□□□ -1.88
CLIP1-217ENST00000543205 UBE2D1P51668 147 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 HIST1H2BDP58876 126 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 KRTAP10-7P60409 375 aaPredicted RBP3.31□□□□□ -1.88
CLIP1-217ENST00000543205 HIST1H2BCP62807 126 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 SEC11AP67812 179 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 HIST2H2BEQ16778 126 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.31□□□□□ -1.88
CLIP1-217ENST00000543205 C5orf38Q86SI9 138 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 FAM19A2Q8N3H0 131 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 HIST1H2BHQ93079 126 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 HIST1H2BNQ99877 126 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 HIST1H2BMQ99879 126 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 CST9LQ9H4G1 147 aa3.31□□□□□ -1.88
CLIP1-217ENST00000543205 ABCA13Q86UQ4 5058 aa3.3□□□□□ -1.88
CLIP1-217ENST00000543205 IGKV2D-30A0A075B6S6 120 aa3.3□□□□□ -1.88
CLIP1-217ENST00000543205 A8MUN3 132 aa3.3□□□□□ -1.88
CLIP1-217ENST00000543205 C9JAW5 83 aa3.3□□□□□ -1.88
CLIP1-217ENST00000543205 APOMO95445 188 aa3.3□□□□□ -1.88
CLIP1-217ENST00000543205 HIGD2BQ4VC39 106 aa3.3□□□□□ -1.88
CLIP1-217ENST00000543205 ORAOV1Q8WV07 137 aa3.3□□□□□ -1.88
CLIP1-217ENST00000543205 ERG28Q9UKR5 140 aa3.3□□□□□ -1.88
CLIP1-217ENST00000543205 EPM2AB3EWF7 344 aa3.29□□□□□ -1.88
CLIP1-217ENST00000543205 LST1O00453 97 aa3.29□□□□□ -1.88
CLIP1-217ENST00000543205 NUPR1O60356 82 aa3.29□□□□□ -1.88
CLIP1-217ENST00000543205 LEPROTL1O95214 131 aa3.29□□□□□ -1.88
CLIP1-217ENST00000543205 HERVK_113P61574 105 aa3.29□□□□□ -1.88
CLIP1-217ENST00000543205 COX6A2Q02221 97 aa3.29□□□□□ -1.88
CLIP1-217ENST00000543205 C15orf56Q8N910 161 aa3.29□□□□□ -1.88
CLIP1-217ENST00000543205 IFI27L1Q96BM0 104 aa3.29□□□□□ -1.88
CLIP1-217ENST00000543205 GVQW2A0A096LPI5 108 aaPredicted RBP3.29□□□□□ -1.88
CLIP1-217ENST00000543205 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.29□□□□□ -1.88
CLIP1-217ENST00000543205 K7ERU9 68 aa3.29□□□□□ -1.88
CLIP1-217ENST00000543205 CHAC1Q9BUX1 264 aa3.29□□□□□ -1.88
CLIP1-217ENST00000543205 CFC1BP0CG36 223 aa3.28□□□□□ -1.88
CLIP1-217ENST00000543205 FABP4P15090 132 aa3.28□□□□□ -1.88
CLIP1-217ENST00000543205 CNBPP62633 177 aaKnown RBP3.28□□□□□ -1.88
CLIP1-217ENST00000543205 OR10D4PQ8NGN7 298 aa3.28□□□□□ -1.88
CLIP1-217ENST00000543205 IGLV4-69A0A075B6H9 119 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 IGHV3-64A0A075B6Q5 118 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 TRAV12-1A0A0B4J245 112 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 KRTAP16-1A8MUX0 517 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 H3BRM9 83 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 IGLC3P0DOY3 106 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 AKR1D1P51857 326 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 SPAG11BQ08648 103 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 OCIAD2Q56VL3 154 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 LINC00526Q96FQ7 95 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 CDKN2A-AS1Q9UH64 79 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 DNAH10Q8IVF4 4471 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 LOC107984640A0A0U1RRK4 108 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 KRTAP10-1P60331 282 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 SYCNQ0VAF6 134 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 Q5XG85 94 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms