RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 PTTG1IPP53801 180 aa8.31□□□□□ -1.08
CCDC42-202ENST00000539522 MUSTN1Q8IVN3 82 aa8.31□□□□□ -1.08
CCDC42-202ENST00000539522 CARD19Q96LW7 228 aa8.31□□□□□ -1.08
CCDC42-202ENST00000539522 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.31□□□□□ -1.08
CCDC42-202ENST00000539522 TRBV30A0A0K0K1B3 111 aa8.3□□□□□ -1.08
CCDC42-202ENST00000539522 RPL24P83731 157 aaKnown RBP8.3□□□□□ -1.08
CCDC42-202ENST00000539522 BATFQ16520 125 aa8.3□□□□□ -1.08
CCDC42-202ENST00000539522 C6orf48Q9UBA6 75 aa8.3□□□□□ -1.08
CCDC42-202ENST00000539522 A0A0U1RRA0 63 aa8.29□□□□□ -1.08
CCDC42-202ENST00000539522 TMEM238LA0A1B0GVL6 79 aa8.29□□□□□ -1.08
CCDC42-202ENST00000539522 A6NDN8 102 aa8.29□□□□□ -1.08
CCDC42-202ENST00000539522 A6NJY4 79 aa8.29□□□□□ -1.08
CCDC42-202ENST00000539522 CHTF8P0CG12 524 aa8.29□□□□□ -1.08
CCDC42-202ENST00000539522 PFN2P35080 140 aa8.29□□□□□ -1.08
CCDC42-202ENST00000539522 RNF151Q2KHN1 245 aa8.29□□□□□ -1.08
CCDC42-202ENST00000539522 LBHQ53QV2 105 aaPredicted RBP8.29□□□□□ -1.08
CCDC42-202ENST00000539522 PPDPFQ9H3Y8 114 aa8.29□□□□□ -1.08
CCDC42-202ENST00000539522 A0A096LNI7 61 aa8.27□□□□□ -1.09
CCDC42-202ENST00000539522 CDK2AP2O75956 126 aa8.27□□□□□ -1.09
CCDC42-202ENST00000539522 FXYD2P54710 66 aa8.27□□□□□ -1.09
CCDC42-202ENST00000539522 C9orf116Q5BN46 136 aaPredicted RBP8.27□□□□□ -1.09
CCDC42-202ENST00000539522 COL5A1-AS1Q5SY13 56 aa8.27□□□□□ -1.09
CCDC42-202ENST00000539522 MIR7-3HGQ8N6C7 128 aa8.27□□□□□ -1.09
CCDC42-202ENST00000539522 DAND5Q8N907 189 aa8.27□□□□□ -1.09
CCDC42-202ENST00000539522 LINC00308Q8TCZ7 52 aa8.27□□□□□ -1.09
CCDC42-202ENST00000539522 VPS13BQ7Z7G8 4022 aa8.26□□□□□ -1.09
CCDC42-202ENST00000539522 LOC107984156A0A0G2JMH3 177 aa8.25□□□□□ -1.09
CCDC42-202ENST00000539522 ARL17AQ8IVW1 177 aa8.25□□□□□ -1.09
CCDC42-202ENST00000539522 SPACA4Q8TDM5 124 aa8.25□□□□□ -1.09
CCDC42-202ENST00000539522 PKIGQ9Y2B9 76 aa8.25□□□□□ -1.09
CCDC42-202ENST00000539522 ABCA13Q86UQ4 5058 aa8.24□□□□□ -1.09
CCDC42-202ENST00000539522 A4D1N5 150 aa8.24□□□□□ -1.09
CCDC42-202ENST00000539522 TLX1NBP0CAT3 122 aa8.24□□□□□ -1.09
CCDC42-202ENST00000539522 Q6ZRP5 223 aa8.24□□□□□ -1.09
CCDC42-202ENST00000539522 SCXQ7RTU7 201 aa8.24□□□□□ -1.09
CCDC42-202ENST00000539522 CIRBP-AS1Q8TBR5 109 aa8.24□□□□□ -1.09
CCDC42-202ENST00000539522 LOC107984640A0A0U1RRK4 108 aa8.23□□□□□ -1.09
CCDC42-202ENST00000539522 A0A1B0GWB2 263 aa8.23□□□□□ -1.09
CCDC42-202ENST00000539522 NPC2P61916 151 aa8.23□□□□□ -1.09
CCDC42-202ENST00000539522 KRTAP7-1Q8IUC3 87 aa8.23□□□□□ -1.09
CCDC42-202ENST00000539522 NHP2Q9NX24 153 aaKnown RBP8.23□□□□□ -1.09
CCDC42-202ENST00000539522 NDUFC2-KCTD14E9PQ53 114 aa8.22□□□□□ -1.09
CCDC42-202ENST00000539522 EIF4EBP3O60516 100 aaPredicted RBP8.22□□□□□ -1.09
CCDC42-202ENST00000539522 CFC1BP0CG36 223 aa8.22□□□□□ -1.09
CCDC42-202ENST00000539522 CFC1P0CG37 223 aa8.22□□□□□ -1.09
CCDC42-202ENST00000539522 SOSTDC1Q6X4U4 206 aa8.22□□□□□ -1.09
CCDC42-202ENST00000539522 SND1-IT1Q9HBX3 110 aa8.22□□□□□ -1.09
CCDC42-202ENST00000539522 IGKV2-24A0A0C4DH68 120 aa8.21□□□□□ -1.1
CCDC42-202ENST00000539522 EPM2AB3EWF7 344 aa8.21□□□□□ -1.1
CCDC42-202ENST00000539522 RPL18AQ02543 176 aaKnown RBP8.21□□□□□ -1.1
CCDC42-202ENST00000539522 A0A0B4J2C4 111 aa8.2□□□□□ -1.1
CCDC42-202ENST00000539522 RAB37Q96AX2 223 aa8.2□□□□□ -1.1
CCDC42-202ENST00000539522 KRTAP4-5Q9BYR2 181 aa8.2□□□□□ -1.1
CCDC42-202ENST00000539522 PRO1854Q9UHT4 67 aa8.2□□□□□ -1.1
CCDC42-202ENST00000539522 A0A087WYN8 130 aa8.19□□□□□ -1.1
CCDC42-202ENST00000539522 A0A1W2PNN7 141 aa8.19□□□□□ -1.1
CCDC42-202ENST00000539522 NDUFC2O95298 119 aa8.19□□□□□ -1.1
CCDC42-202ENST00000539522 GAGE2BQ13066 116 aa8.19□□□□□ -1.1
CCDC42-202ENST00000539522 C9orf129Q5T035 196 aaKnown RBP8.19□□□□□ -1.1
CCDC42-202ENST00000539522 PKHD1L1Q86WI1 4243 aa8.18□□□□□ -1.1
CCDC42-202ENST00000539522 FAM168BA1KXE4 195 aa8.18□□□□□ -1.1
CCDC42-202ENST00000539522 TAX1BP3O14907 124 aa8.18□□□□□ -1.1
CCDC42-202ENST00000539522 SMR3BP02814 79 aaPredicted RBP8.18□□□□□ -1.1
CCDC42-202ENST00000539522 PLAC8Q9NZF1 115 aa8.18□□□□□ -1.1
CCDC42-202ENST00000539522 KRTAP10-4P60372 401 aaPredicted RBP8.17□□□□□ -1.1
CCDC42-202ENST00000539522 GAGE2EQ4V326 116 aa8.17□□□□□ -1.1
CCDC42-202ENST00000539522 LINC00474Q9P2X8 69 aa8.17□□□□□ -1.1
CCDC42-202ENST00000539522 GAGE2DQ9UEU5 116 aa8.17□□□□□ -1.1
CCDC42-202ENST00000539522 TRAV13-2A0A0B4J235 113 aa8.16□□□□□ -1.1
CCDC42-202ENST00000539522 C9orf118A6NHY6 69 aa8.16□□□□□ -1.1
CCDC42-202ENST00000539522 K7ERJ3 54 aa8.16□□□□□ -1.1
CCDC42-202ENST00000539522 Q8NDZ9 215 aa8.15□□□□□ -1.1
CCDC42-202ENST00000539522 XAGE1AQ9HD64 81 aa8.15□□□□□ -1.1
CCDC42-202ENST00000539522 PCLOQ9Y6V0 5065 aa8.14□□□□□ -1.11
CCDC42-202ENST00000539522 SRRM2Q9UQ35 2752 aaKnown RBP8.14□□□□□ -1.11
CCDC42-202ENST00000539522 IGKV2-28A0A075B6P5 120 aa8.13□□□□□ -1.11
CCDC42-202ENST00000539522 IGKV2D-28P01615 120 aa8.13□□□□□ -1.11
CCDC42-202ENST00000539522 SERTAD4-AS1Q5TG53 156 aa8.13□□□□□ -1.11
CCDC42-202ENST00000539522 KRTAP11-1Q8IUC1 163 aa8.13□□□□□ -1.11
CCDC42-202ENST00000539522 Q8N1X5 172 aa8.13□□□□□ -1.11
CCDC42-202ENST00000539522 PLA2G2DQ9UNK4 145 aa8.13□□□□□ -1.11
CCDC42-202ENST00000539522 TRBV10-2A0A0K0K1G8 114 aa8.12□□□□□ -1.11
CCDC42-202ENST00000539522 PRR3P79522 188 aaKnown RBP8.12□□□□□ -1.11
CCDC42-202ENST00000539522 H3BUT2 72 aa8.11□□□□□ -1.11
CCDC42-202ENST00000539522 DPH3Q96FX2 82 aa8.11□□□□□ -1.11
CCDC42-202ENST00000539522 H7C2G1 150 aa8.1□□□□□ -1.11
CCDC42-202ENST00000539522 TSPAN13O95857 204 aa8.1□□□□□ -1.11
CCDC42-202ENST00000539522 RPL13AP40429 203 aaKnown RBP8.1□□□□□ -1.11
CCDC42-202ENST00000539522 LINC00528Q8N1L1 170 aa8.1□□□□□ -1.11
CCDC42-202ENST00000539522 LINC00337Q8N6G1 96 aa8.1□□□□□ -1.11
CCDC42-202ENST00000539522 OR13C6PQ8NH95 151 aa8.1□□□□□ -1.11
CCDC42-202ENST00000539522 TMEM126AQ9H061 195 aa8.1□□□□□ -1.11
CCDC42-202ENST00000539522 M0R378 163 aa8.09□□□□□ -1.11
CCDC42-202ENST00000539522 VPREB1P12018 145 aa8.09□□□□□ -1.11
CCDC42-202ENST00000539522 Q1RN00 199 aa8.09□□□□□ -1.11
CCDC42-202ENST00000539522 PHF5AQ7RTV0 110 aaKnown RBP8.09□□□□□ -1.11
CCDC42-202ENST00000539522 A0A1B0GV90 55 aa8.08□□□□□ -1.12
CCDC42-202ENST00000539522 FABP2P12104 132 aa8.08□□□□□ -1.12
CCDC42-202ENST00000539522 PSMB2P49721 201 aa8.08□□□□□ -1.12
CCDC42-202ENST00000539522 S100A7L2Q5SY68 101 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms