RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 PRR26Q8N8Z3 221 aa6.96□□□□□ -1.3
RTN3-209ENST00000538995 LINC00167Q96N53 147 aa6.96□□□□□ -1.3
RTN3-209ENST00000538995 HSBP1O75506 76 aa6.95□□□□□ -1.3
RTN3-209ENST00000538995 PFN2P35080 140 aa6.95□□□□□ -1.3
RTN3-209ENST00000538995 ZNF625Q96I27 306 aaPredicted RBP6.95□□□□□ -1.3
RTN3-209ENST00000538995 TMEM223A0PJW6 202 aa6.94□□□□□ -1.3
RTN3-209ENST00000538995 SVIPQ8NHG7 77 aa6.94□□□□□ -1.3
RTN3-209ENST00000538995 SND1-IT1Q9HBX3 110 aa6.94□□□□□ -1.3
RTN3-209ENST00000538995 GAGE10A6NGK3 116 aa6.93□□□□□ -1.3
RTN3-209ENST00000538995 RPL37AP8A6NKH3 93 aa6.93□□□□□ -1.3
RTN3-209ENST00000538995 TRGC2P03986 189 aa6.93□□□□□ -1.3
RTN3-209ENST00000538995 VPREB1P12018 145 aa6.93□□□□□ -1.3
RTN3-209ENST00000538995 RPL24P83731 157 aaKnown RBP6.93□□□□□ -1.3
RTN3-209ENST00000538995 ANKRD39Q53RE8 183 aa6.93□□□□□ -1.3
RTN3-209ENST00000538995 KRTAP13-1Q8IUC0 172 aa6.91□□□□□ -1.3
RTN3-209ENST00000538995 FAM19A2Q8N3H0 131 aa6.91□□□□□ -1.3
RTN3-209ENST00000538995 SERF1AO75920 110 aa6.9□□□□□ -1.3
RTN3-209ENST00000538995 LEPROTL1O95214 131 aa6.9□□□□□ -1.3
RTN3-209ENST00000538995 KRTAP4-8Q9BYQ9 185 aa6.9□□□□□ -1.3
RTN3-209ENST00000538995 IGKV2-28A0A075B6P5 120 aa6.89□□□□□ -1.31
RTN3-209ENST00000538995 IGKV2D-28P01615 120 aa6.89□□□□□ -1.31
RTN3-209ENST00000538995 UBE2AP49459 152 aa6.89□□□□□ -1.31
RTN3-209ENST00000538995 LINC00158P58513 81 aa6.89□□□□□ -1.31
RTN3-209ENST00000538995 LINC00310P59036 64 aa6.89□□□□□ -1.31
RTN3-209ENST00000538995 HERV-K104P63124 156 aa6.89□□□□□ -1.31
RTN3-209ENST00000538995 HSPB8Q9UJY1 196 aa6.89□□□□□ -1.31
RTN3-209ENST00000538995 COLCA2A8K830 154 aa6.88□□□□□ -1.31
RTN3-209ENST00000538995 LINC00587B1AMM8 73 aa6.88□□□□□ -1.31
RTN3-209ENST00000538995 SCO1O75880 301 aa6.88□□□□□ -1.31
RTN3-209ENST00000538995 PLNP26678 52 aa6.88□□□□□ -1.31
RTN3-209ENST00000538995 RNF213Q63HN8 5207 aa6.88□□□□□ -1.31
RTN3-209ENST00000538995 Q8NDZ9 215 aa6.87□□□□□ -1.31
RTN3-209ENST00000538995 TMEM126AQ9H061 195 aa6.87□□□□□ -1.31
RTN3-209ENST00000538995 NDUFA12Q9UI09 145 aa6.87□□□□□ -1.31
RTN3-209ENST00000538995 MYMXA0A1B0GTQ4 84 aa6.86□□□□□ -1.31
RTN3-209ENST00000538995 H0Y8G0 127 aa6.86□□□□□ -1.31
RTN3-209ENST00000538995 CRYGAP11844 174 aa6.86□□□□□ -1.31
RTN3-209ENST00000538995 MEIG1Q5JSS6 88 aa6.86□□□□□ -1.31
RTN3-209ENST00000538995 PCP4L1A6NKN8 68 aa6.85□□□□□ -1.31
RTN3-209ENST00000538995 M0R378 163 aa6.85□□□□□ -1.31
RTN3-209ENST00000538995 SMIM13P0DJ93 91 aa6.85□□□□□ -1.31
RTN3-209ENST00000538995 FAM229BQ4G0N7 80 aa6.85□□□□□ -1.31
RTN3-209ENST00000538995 PLEKHB2Q96CS7 222 aa6.85□□□□□ -1.31
RTN3-209ENST00000538995 MAP1LC3CQ9BXW4 147 aa6.85□□□□□ -1.31
RTN3-209ENST00000538995 A0A087X002 238 aa6.84□□□□□ -1.31
RTN3-209ENST00000538995 A0A0U1RRA0 63 aa6.84□□□□□ -1.31
RTN3-209ENST00000538995 TMEM238LA0A1B0GVL6 79 aa6.84□□□□□ -1.31
RTN3-209ENST00000538995 TMEM238C9JI98 176 aa6.84□□□□□ -1.31
RTN3-209ENST00000538995 LEPROTO15243 131 aa6.84□□□□□ -1.31
RTN3-209ENST00000538995 DPM2O94777 84 aa6.84□□□□□ -1.31
RTN3-209ENST00000538995 HERVK_113P61574 105 aa6.84□□□□□ -1.31
RTN3-209ENST00000538995 FAM19A1Q7Z5A9 133 aa6.84□□□□□ -1.31
RTN3-209ENST00000538995 MIR7-3HGQ8N6C7 128 aa6.84□□□□□ -1.31
RTN3-209ENST00000538995 CBY1Q9Y3M2 126 aa6.84□□□□□ -1.31
RTN3-209ENST00000538995 IGKV2D-26A0A0A0MRZ7 120 aa6.83□□□□□ -1.32
RTN3-209ENST00000538995 FABP4P15090 132 aa6.83□□□□□ -1.32
RTN3-209ENST00000538995 NMUP48645 174 aa6.83□□□□□ -1.32
RTN3-209ENST00000538995 PRLHP81277 87 aa6.83□□□□□ -1.32
RTN3-209ENST00000538995 BOD1L2Q8IYS8 172 aa6.83□□□□□ -1.32
RTN3-209ENST00000538995 IGKCP01834 107 aa6.82□□□□□ -1.32
RTN3-209ENST00000538995 TSPEAR-AS2P59090 65 aa6.82□□□□□ -1.32
RTN3-209ENST00000538995 TYMSOSQ8TAI1 123 aa6.82□□□□□ -1.32
RTN3-209ENST00000538995 LOC107984156A0A0G2JMH3 177 aa6.81□□□□□ -1.32
RTN3-209ENST00000538995 J3QQQ9 107 aa6.81□□□□□ -1.32
RTN3-209ENST00000538995 PRYO14603 147 aa6.81□□□□□ -1.32
RTN3-209ENST00000538995 ARL17AQ8IVW1 177 aa6.81□□□□□ -1.32
RTN3-209ENST00000538995 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.8□□□□□ -1.32
RTN3-209ENST00000538995 NCR3O14931 201 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 HIST1H2BKO60814 126 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 HIST1H2BJP06899 126 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 LGALS3P17931 250 aaKnown RBP6.79□□□□□ -1.32
RTN3-209ENST00000538995 HIST1H2BOP23527 126 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 HIST1H2BBP33778 126 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 HIST1H2BDP58876 126 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 HIST1H2BCP62807 126 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 HIST2H2BEQ16778 126 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 KRTAP13-2Q52LG2 175 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.79□□□□□ -1.32
RTN3-209ENST00000538995 LINC00337Q8N6G1 96 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 HIST1H2BHQ93079 126 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 C12orf57Q99622 126 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 HIST1H2BNQ99877 126 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 HIST1H2BMQ99879 126 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 PMCHL2Q9BQD1 86 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 KRTAP9-2Q9BYQ4 174 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 KCNQ1DNQ9H478 68 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 ANAPC11Q9NYG5 84 aa6.79□□□□□ -1.32
RTN3-209ENST00000538995 TRBV10-2A0A0K0K1G8 114 aa6.78□□□□□ -1.32
RTN3-209ENST00000538995 SPRR1AP35321 89 aa6.78□□□□□ -1.32
RTN3-209ENST00000538995 LPAP08519 4548 aa6.78□□□□□ -1.32
RTN3-209ENST00000538995 E9PLD3 99 aa6.77□□□□□ -1.33
RTN3-209ENST00000538995 SYS1-DBNDD2H3BUS1 97 aa6.77□□□□□ -1.33
RTN3-209ENST00000538995 MIEN1Q9BRT3 115 aa6.77□□□□□ -1.33
RTN3-209ENST00000538995 HIGD2AQ9BW72 106 aa6.77□□□□□ -1.33
RTN3-209ENST00000538995 ZNF706Q9Y5V0 76 aaPredicted RBP6.77□□□□□ -1.33
RTN3-209ENST00000538995 TRBV10-3A0A0K0K1G6 114 aa6.76□□□□□ -1.33
RTN3-209ENST00000538995 KRTAP9-6A0A140TA67 174 aa6.76□□□□□ -1.33
RTN3-209ENST00000538995 SMIM6P0DI80 62 aa6.76□□□□□ -1.33
RTN3-209ENST00000538995 PRR4Q16378 134 aa6.76□□□□□ -1.33
RTN3-209ENST00000538995 DAND5Q8N907 189 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms