RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 C18orf32Q8TCD1 76 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 SCGB1C1Q8TD33 95 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 PPP1R1CQ8WVI7 109 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 BORCS7Q96B45 105 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 PLEKHB2Q96CS7 222 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 S100A16Q96FQ6 103 aaKnown RBP1.45□□□□□ -2.18
SYNE1-232ENST00000535081 ZC2HC1AQ96GY0 325 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 C2orf50Q96LR7 162 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 LINC01600Q96MT4 127 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 NAA38Q9BRA0 125 aaKnown RBP1.45□□□□□ -2.18
SYNE1-232ENST00000535081 MANBALQ9NQG1 85 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 HHLA3Q9XRX5 114 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 SPCS1Q9Y6A9 102 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 PXMP4Q9Y6I8 212 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 TRAV9-1A0A075B6T8 112 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 TRAV1-2A0A0B4J238 106 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 LOC107984640A0A0U1RRK4 108 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 FAM240AA0A1B0GVK7 77 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 H3BUT2 72 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 LECT2O14960 151 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 CRXO43186 299 aaPredicted RBP1.44□□□□□ -2.18
SYNE1-232ENST00000535081 NDUFC2O95298 119 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 NCR2O95944 276 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 IGHV3-30P01768 117 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 IGHV3-33P01772 117 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 SLC25A5P05141 298 aaKnown RBP1.44□□□□□ -2.18
SYNE1-232ENST00000535081 OR5AL1P0C617 328 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 IGLC6P0CF74 106 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 MT1HL1P0DM35 61 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 IGHV3-30-3P0DP02 117 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 IGHV3-30-5P0DP03 117 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 KRTAP12-1P59990 96 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 DEFB1P60022 68 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 KRTDAPP60985 99 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 SLC38A11Q08AI6 406 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 Q5XG85 94 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 HRCT1Q6UXD1 115 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 ZNF818PQ6ZRF7 136 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 Q6ZTI0 123 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 ATOH7Q8N100 152 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 TMEM191AQ9H0A3 160 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 RNASE7Q9H1E1 156 aaKnown RBP1.44□□□□□ -2.18
SYNE1-232ENST00000535081 SLC39A9Q9NUM3 307 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 PKIGQ9Y2B9 76 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 FAT4Q6V0I7 4981 aa1.44□□□□□ -2.18
SYNE1-232ENST00000535081 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.43□□□□□ -2.18
SYNE1-232ENST00000535081 A0A1B0GU33 70 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 A0A1B0GV50 99 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 PGPA6NDG6 321 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 CEBPZOSA8MTT3 80 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 H3BMG7 143 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 SYS1-DBNDD2H3BUS1 97 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 M0R2P5 195 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 UQCRQO14949 82 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 NUPR1O60356 82 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 DPM2O94777 84 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 APOMO95445 188 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 CRPP02741 224 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 MT-ND6P03923 174 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 PRM2P04554 102 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 C3orf79P0CE67 100 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 KRTAP10-4P60372 401 aaPredicted RBP1.43□□□□□ -2.18
SYNE1-232ENST00000535081 TMEM258P61165 79 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 HERVK_113P63121 156 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 QRFPP83859 136 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 WFDC2Q14508 124 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 INSL4Q14641 139 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 SPINK9Q5DT21 86 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 RPL7L1Q6DKI1 246 aaKnown RBP1.43□□□□□ -2.18
SYNE1-232ENST00000535081 SPINK6Q6UWN8 80 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 AMTNQ6UX39 209 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 CYP2G1PQ6ZSU1 146 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 PRNTQ86SH4 94 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 PPDPFLQ8WWR9 84 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 LINC00526Q96FQ7 95 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 C20orf78Q9BR46 151 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 TMEM147Q9BVK8 224 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 TMEM222Q9H0R3 208 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 LRP1Q07954 4544 aaKnown RBP1.43□□□□□ -2.18
SYNE1-232ENST00000535081 PKHD1L1Q86WI1 4243 aa1.43□□□□□ -2.18
SYNE1-232ENST00000535081 FAT3Q8TDW7 4589 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 TRAV1-1A0A0B4J248 108 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 TRAV12-3A0A0B4J271 114 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 C3orf85A0A1B0GTC6 90 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 FAM236DA0A1B0GTK5 79 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 LOC389332A0A1B0GUA5 103 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 A8MTW9 85 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 A8MWP4 228 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 J3QQQ9 107 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 PGLYRP1O75594 196 aaPredicted RBP1.42□□□□□ -2.18
SYNE1-232ENST00000535081 SNCGO76070 127 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 SMIM13P0DJ93 91 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 SCGB1C2P0DMR2 95 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 FAM236CP0DP71 79 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 COX8AP10176 69 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 CRYGAP11844 174 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 TAS2R45P59539 299 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 UBE2G1P62253 170 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 ZNF90Q03938 601 aa1.42□□□□□ -2.18
SYNE1-232ENST00000535081 ETDBQ3ZM63 59 aa1.42□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms