RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 A0A0A0MQY5 61 aa4.5□□□□□ -1.69
CD44-232ENST00000531118 LOC389332A0A1B0GUA5 103 aa4.5□□□□□ -1.69
CD44-232ENST00000531118 RPL39P62891 51 aaKnown RBP4.5□□□□□ -1.69
CD44-232ENST00000531118 MRPS36P82909 103 aaKnown RBP4.5□□□□□ -1.69
CD44-232ENST00000531118 ORMDL2Q53FV1 153 aa4.5□□□□□ -1.69
CD44-232ENST00000531118 Q6ZN92 141 aa4.5□□□□□ -1.69
CD44-232ENST00000531118 NXT2Q9NPJ8 142 aaKnown RBP4.5□□□□□ -1.69
CD44-232ENST00000531118 ADCYAP1P18509 176 aa4.49□□□□□ -1.69
CD44-232ENST00000531118 RHEBQ15382 184 aa4.49□□□□□ -1.69
CD44-232ENST00000531118 NDUFA5Q16718 116 aa4.49□□□□□ -1.69
CD44-232ENST00000531118 PCOTHQ58A44 107 aa4.49□□□□□ -1.69
CD44-232ENST00000531118 PAPPA-AS1Q5QFB9 102 aa4.49□□□□□ -1.69
CD44-232ENST00000531118 FAM19A2Q8N3H0 131 aa4.49□□□□□ -1.69
CD44-232ENST00000531118 Q8N8P6 123 aa4.49□□□□□ -1.69
CD44-232ENST00000531118 Q8NBF4 154 aa4.49□□□□□ -1.69
CD44-232ENST00000531118 C2orf88Q9BSF0 95 aa4.49□□□□□ -1.69
CD44-232ENST00000531118 CYSLTR1Q9Y271 337 aa4.49□□□□□ -1.69
CD44-232ENST00000531118 PYGO1Q9Y3Y4 419 aa4.49□□□□□ -1.69
CD44-232ENST00000531118 NEBP20929 6669 aa4.48□□□□□ -1.69
CD44-232ENST00000531118 LINC01549A6NIU2 74 aa4.48□□□□□ -1.69
CD44-232ENST00000531118 TEX43Q6ZNM6 134 aa4.48□□□□□ -1.69
CD44-232ENST00000531118 FAM19A1Q7Z5A9 133 aa4.48□□□□□ -1.69
CD44-232ENST00000531118 URB1-AS1Q96HZ7 61 aa4.48□□□□□ -1.69
CD44-232ENST00000531118 TMEM141Q96I45 108 aa4.48□□□□□ -1.69
CD44-232ENST00000531118 GNB1LQ9BYB4 327 aa4.48□□□□□ -1.69
CD44-232ENST00000531118 RPS10P5Q9NQ39 176 aa4.48□□□□□ -1.69
CD44-232ENST00000531118 IGLV5-37A0A075B6J1 123 aa4.47□□□□□ -1.69
CD44-232ENST00000531118 IGKV2-28A0A075B6P5 120 aa4.47□□□□□ -1.69
CD44-232ENST00000531118 IGKV2D-28P01615 120 aa4.47□□□□□ -1.69
CD44-232ENST00000531118 PRSS2P07478 247 aa4.47□□□□□ -1.69
CD44-232ENST00000531118 SEC11AP67812 179 aa4.47□□□□□ -1.69
CD44-232ENST00000531118 C10orf91Q5T1B1 145 aa4.47□□□□□ -1.69
CD44-232ENST00000531118 C2orf66Q6UXQ4 117 aa4.47□□□□□ -1.69
CD44-232ENST00000531118 COX6B2Q6YFQ2 88 aa4.47□□□□□ -1.69
CD44-232ENST00000531118 PLEKHB2Q96CS7 222 aa4.47□□□□□ -1.69
CD44-232ENST00000531118 VCX2Q9H322 139 aa4.47□□□□□ -1.69
CD44-232ENST00000531118 TOMM7Q9P0U1 55 aa4.47□□□□□ -1.69
CD44-232ENST00000531118 KRTAP4-16G5E9R7 235 aaPredicted RBP4.46□□□□□ -1.7
CD44-232ENST00000531118 SPINK1P00995 79 aa4.46□□□□□ -1.7
CD44-232ENST00000531118 CKS1BP61024 79 aa4.46□□□□□ -1.7
CD44-232ENST00000531118 Q8IZM0 81 aa4.46□□□□□ -1.7
CD44-232ENST00000531118 LINC01561Q8N1V8 128 aa4.46□□□□□ -1.7
CD44-232ENST00000531118 Q8N377 158 aa4.46□□□□□ -1.7
CD44-232ENST00000531118 NKAPP1Q8N9T2 125 aa4.46□□□□□ -1.7
CD44-232ENST00000531118 SPRR4Q96PI1 79 aa4.46□□□□□ -1.7
CD44-232ENST00000531118 IGLV4-3A0A075B6K6 122 aa4.45□□□□□ -1.7
CD44-232ENST00000531118 SCO1O75880 301 aa4.45□□□□□ -1.7
CD44-232ENST00000531118 SNAPINO95295 136 aa4.45□□□□□ -1.7
CD44-232ENST00000531118 FABP9Q0Z7S8 132 aa4.45□□□□□ -1.7
CD44-232ENST00000531118 KIAA1644Q3SXP7 199 aa4.45□□□□□ -1.7
CD44-232ENST00000531118 SVBPQ8N300 66 aa4.45□□□□□ -1.7
CD44-232ENST00000531118 TMEM126AQ9H061 195 aa4.45□□□□□ -1.7
CD44-232ENST00000531118 SMCO4Q9NRQ5 59 aa4.45□□□□□ -1.7
CD44-232ENST00000531118 TMEM238C9JI98 176 aa4.44□□□□□ -1.7
CD44-232ENST00000531118 F8VRH5 84 aa4.44□□□□□ -1.7
CD44-232ENST00000531118 APOC3P02656 99 aa4.44□□□□□ -1.7
CD44-232ENST00000531118 CFC1P0CG37 223 aa4.44□□□□□ -1.7
CD44-232ENST00000531118 RPS29P62273 56 aaKnown RBP4.44□□□□□ -1.7
CD44-232ENST00000531118 FA2HQ7L5A8 372 aa4.44□□□□□ -1.7
CD44-232ENST00000531118 ERASQ7Z444 233 aa4.44□□□□□ -1.7
CD44-232ENST00000531118 CBLN2Q8IUK8 224 aa4.44□□□□□ -1.7
CD44-232ENST00000531118 TOMM6Q96B49 74 aa4.44□□□□□ -1.7
CD44-232ENST00000531118 SCGB3A1Q96QR1 104 aa4.44□□□□□ -1.7
CD44-232ENST00000531118 TIMM17AQ99595 171 aa4.44□□□□□ -1.7
CD44-232ENST00000531118 ALKBH7Q9BT30 221 aaPredicted RBP4.44□□□□□ -1.7
CD44-232ENST00000531118 IGIPA6NJ69 53 aa4.43□□□□□ -1.7
CD44-232ENST00000531118 HERVK_113P63121 156 aa4.43□□□□□ -1.7
CD44-232ENST00000531118 AMELXQ99217 191 aa4.43□□□□□ -1.7
CD44-232ENST00000531118 HIGD2AQ9BW72 106 aa4.43□□□□□ -1.7
CD44-232ENST00000531118 GEMIN7Q9H840 131 aaKnown RBP4.43□□□□□ -1.7
CD44-232ENST00000531118 TRAPPC1Q9Y5R8 145 aa4.43□□□□□ -1.7
CD44-232ENST00000531118 IGKV2D-30A0A075B6S6 120 aa4.42□□□□□ -1.7
CD44-232ENST00000531118 M0R378 163 aa4.42□□□□□ -1.7
CD44-232ENST00000531118 SLC25A20O43772 301 aa4.42□□□□□ -1.7
CD44-232ENST00000531118 RAB5BP61020 215 aa4.42□□□□□ -1.7
CD44-232ENST00000531118 C6orf226Q5I0X4 101 aa4.42□□□□□ -1.7
CD44-232ENST00000531118 LINC01546A6NGU7 62 aa4.41□□□□□ -1.7
CD44-232ENST00000531118 CXCL5P42830 114 aa4.41□□□□□ -1.7
CD44-232ENST00000531118 LCE1AQ5T7P2 110 aa4.41□□□□□ -1.7
CD44-232ENST00000531118 FAM19A3Q7Z5A8 133 aa4.41□□□□□ -1.7
CD44-232ENST00000531118 ZNF706Q9Y5V0 76 aaPredicted RBP4.41□□□□□ -1.7
CD44-232ENST00000531118 LINC00614P0C842 121 aa4.4□□□□□ -1.71
CD44-232ENST00000531118 TINCRA0A1B0GVN0 87 aa4.39□□□□□ -1.71
CD44-232ENST00000531118 PMVKQ15126 192 aa4.39□□□□□ -1.71
CD44-232ENST00000531118 H3BRM9 83 aa4.38□□□□□ -1.71
CD44-232ENST00000531118 ATP5LO75964 103 aa4.38□□□□□ -1.71
CD44-232ENST00000531118 HBDP02042 147 aa4.38□□□□□ -1.71
CD44-232ENST00000531118 VPREB1P12018 145 aa4.38□□□□□ -1.71
CD44-232ENST00000531118 NDUFA6P56556 154 aa4.38□□□□□ -1.71
CD44-232ENST00000531118 MOBPQ13875 183 aa4.38□□□□□ -1.71
CD44-232ENST00000531118 ZC2HC1BQ5TFG8 222 aa4.38□□□□□ -1.71
CD44-232ENST00000531118 C18orf32Q8TCD1 76 aa4.38□□□□□ -1.71
CD44-232ENST00000531118 CST9LQ9H4G1 147 aa4.38□□□□□ -1.71
CD44-232ENST00000531118 CDKN2A-AS1Q9UH64 79 aa4.38□□□□□ -1.71
CD44-232ENST00000531118 MUC12Q9UKN1 5478 aa4.38□□□□□ -1.71
CD44-232ENST00000531118 C9orf92A6NGG3 77 aa4.37□□□□□ -1.71
CD44-232ENST00000531118 PDZD11Q5EBL8 140 aa4.37□□□□□ -1.71
CD44-232ENST00000531118 PAM16Q9Y3D7 125 aa4.37□□□□□ -1.71
CD44-232ENST00000531118 IGLV5-45A0A087WSX0 123 aa4.36□□□□□ -1.71
CD44-232ENST00000531118 LINC00483Q53H64 154 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms