RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 LINC00336Q6ZUF6 198 aa13.84□□□□□ -0.19
VPS28-212ENST00000530836 FRAS1Q86XX4 4008 aa13.84□□□□□ -0.19
VPS28-212ENST00000530836 A0A1W2PPM0 123 aa13.83□□□□□ -0.2
VPS28-212ENST00000530836 LECT2O14960 151 aa13.83□□□□□ -0.2
VPS28-212ENST00000530836 TSPAN13O95857 204 aa13.83□□□□□ -0.2
VPS28-212ENST00000530836 DNAH17Q9UFH2 4485 aa13.83□□□□□ -0.2
VPS28-212ENST00000530836 TLX1NBP0CAT3 122 aa13.82□□□□□ -0.2
VPS28-212ENST00000530836 FABP2P12104 132 aa13.82□□□□□ -0.2
VPS28-212ENST00000530836 CNBPP62633 177 aaKnown RBP13.81□□□□□ -0.2
VPS28-212ENST00000530836 VAMP3Q15836 100 aa13.81□□□□□ -0.2
VPS28-212ENST00000530836 SLPIP03973 132 aa13.8□□□□□ -0.2
VPS28-212ENST00000530836 LYRM7Q5U5X0 104 aa13.8□□□□□ -0.2
VPS28-212ENST00000530836 Q1RN00 199 aa13.79□□□□□ -0.2
VPS28-212ENST00000530836 NAA38Q9BRA0 125 aaKnown RBP13.79□□□□□ -0.2
VPS28-212ENST00000530836 FAT2Q9NYQ8 4349 aa13.79□□□□□ -0.2
VPS28-212ENST00000530836 IGKV2-28A0A075B6P5 120 aa13.79□□□□□ -0.2
VPS28-212ENST00000530836 LRCOL1A6NCL2 159 aa13.79□□□□□ -0.2
VPS28-212ENST00000530836 IGKV2D-28P01615 120 aa13.79□□□□□ -0.2
VPS28-212ENST00000530836 RPL13AP40429 203 aaKnown RBP13.79□□□□□ -0.2
VPS28-212ENST00000530836 WFDC2Q14508 124 aa13.79□□□□□ -0.2
VPS28-212ENST00000530836 H7C2G1 150 aa13.76□□□□□ -0.21
VPS28-212ENST00000530836 TNP2Q05952 138 aa13.76□□□□□ -0.21
VPS28-212ENST00000530836 PSMB2P49721 201 aa13.75□□□□□ -0.21
VPS28-212ENST00000530836 Q6ZRP5 223 aa13.75□□□□□ -0.21
VPS28-212ENST00000530836 GTF2H5Q6ZYL4 71 aa13.75□□□□□ -0.21
VPS28-212ENST00000530836 LINC00337Q8N6G1 96 aa13.75□□□□□ -0.21
VPS28-212ENST00000530836 PKIGQ9Y2B9 76 aa13.75□□□□□ -0.21
VPS28-212ENST00000530836 LOC107984640A0A0U1RRK4 108 aa13.74□□□□□ -0.21
VPS28-212ENST00000530836 XAGE1AQ9HD64 81 aa13.74□□□□□ -0.21
VPS28-212ENST00000530836 TRBV10-2A0A0K0K1G8 114 aa13.73□□□□□ -0.21
VPS28-212ENST00000530836 GAGE10A6NGK3 116 aa13.73□□□□□ -0.21
VPS28-212ENST00000530836 COX6CP09669 75 aa13.73□□□□□ -0.21
VPS28-212ENST00000530836 GAGE2EQ4V326 116 aa13.73□□□□□ -0.21
VPS28-212ENST00000530836 GAGE2DQ9UEU5 116 aa13.73□□□□□ -0.21
VPS28-212ENST00000530836 SPCS1Q9Y6A9 102 aa13.73□□□□□ -0.21
VPS28-212ENST00000530836 RPL18AQ02543 176 aaKnown RBP13.72□□□□□ -0.21
VPS28-212ENST00000530836 K7EP34 96 aa13.72□□□□□ -0.21
VPS28-212ENST00000530836 SCGB1C2P0DMR2 95 aa13.71□□□□□ -0.22
VPS28-212ENST00000530836 UBE2V1Q13404 147 aa13.71□□□□□ -0.22
VPS28-212ENST00000530836 TMEM126AQ9H061 195 aa13.71□□□□□ -0.22
VPS28-212ENST00000530836 TRBV20-1A0A075B6N2 111 aa13.7□□□□□ -0.22
VPS28-212ENST00000530836 Q8N814 137 aa13.7□□□□□ -0.22
VPS28-212ENST00000530836 OR13C6PQ8NH95 151 aa13.7□□□□□ -0.22
VPS28-212ENST00000530836 A0A1B0GVY2 172 aa13.69□□□□□ -0.22
VPS28-212ENST00000530836 A0A087WTM6 91 aa13.68□□□□□ -0.22
VPS28-212ENST00000530836 TRIAP1O43715 76 aa13.68□□□□□ -0.22
VPS28-212ENST00000530836 RPL28P46779 137 aaKnown RBP13.68□□□□□ -0.22
VPS28-212ENST00000530836 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.68□□□□□ -0.22
VPS28-212ENST00000530836 PLA2G2DQ9UNK4 145 aa13.68□□□□□ -0.22
VPS28-212ENST00000530836 PRR3P79522 188 aaKnown RBP13.67□□□□□ -0.22
VPS28-212ENST00000530836 S100A7L2Q5SY68 101 aa13.67□□□□□ -0.22
VPS28-212ENST00000530836 C9orf129Q5T035 196 aaKnown RBP13.67□□□□□ -0.22
VPS28-212ENST00000530836 Q8NDZ9 215 aa13.67□□□□□ -0.22
VPS28-212ENST00000530836 NCR3O14931 201 aa13.66□□□□□ -0.22
VPS28-212ENST00000530836 VPREB1P12018 145 aa13.66□□□□□ -0.22
VPS28-212ENST00000530836 PKD1P98161 4303 aa13.66□□□□□ -0.22
VPS28-212ENST00000530836 EPPK1P58107 5090 aaKnown RBP13.65□□□□□ -0.22
VPS28-212ENST00000530836 C9orf163Q8N9P6 203 aa13.65□□□□□ -0.22
VPS28-212ENST00000530836 GAGE2BQ13066 116 aa13.64□□□□□ -0.23
VPS28-212ENST00000530836 HECTD4Q9Y4D8 3996 aa13.64□□□□□ -0.23
VPS28-212ENST00000530836 DNAH11Q96DT5 4516 aa13.64□□□□□ -0.23
VPS28-212ENST00000530836 C16orf90A8MZG2 172 aa13.64□□□□□ -0.23
VPS28-212ENST00000530836 M0R378 163 aa13.64□□□□□ -0.23
VPS28-212ENST00000530836 CBY1Q9Y3M2 126 aa13.64□□□□□ -0.23
VPS28-212ENST00000530836 SMIM11BQ8TCY0 68 aa13.63□□□□□ -0.23
VPS28-212ENST00000530836 IGLV6-57P01721 117 aa13.62□□□□□ -0.23
VPS28-212ENST00000530836 IGLV5-37A0A075B6J1 123 aa13.61□□□□□ -0.23
VPS28-212ENST00000530836 NKAPP1Q8N9T2 125 aa13.61□□□□□ -0.23
VPS28-212ENST00000530836 TCL1BO95988 128 aa13.6□□□□□ -0.23
VPS28-212ENST00000530836 ATXN8Q156A1 80 aa13.6□□□□□ -0.23
VPS28-212ENST00000530836 H0YGX0 51 aa13.58□□□□□ -0.24
VPS28-212ENST00000530836 LINC00474Q9P2X8 69 aa13.58□□□□□ -0.24
VPS28-212ENST00000530836 H3BMG7 143 aa13.57□□□□□ -0.24
VPS28-212ENST00000530836 KRTAP10-2P60368 255 aa13.57□□□□□ -0.24
VPS28-212ENST00000530836 A0A096LNI7 61 aa13.56□□□□□ -0.24
VPS28-212ENST00000530836 TRBV10-3A0A0K0K1G6 114 aa13.55□□□□□ -0.24
VPS28-212ENST00000530836 SERTAD4-AS1Q5TG53 156 aa13.55□□□□□ -0.24
VPS28-212ENST00000530836 SDIM1Q6ZPB5 146 aa13.55□□□□□ -0.24
VPS28-212ENST00000530836 LST1O00453 97 aa13.54□□□□□ -0.24
VPS28-212ENST00000530836 PKHD1P08F94 4074 aa13.54□□□□□ -0.24
VPS28-212ENST00000530836 TRAV23DV6A0A075B6W5 121 aa13.53□□□□□ -0.24
VPS28-212ENST00000530836 F8W1H4 67 aa13.52□□□□□ -0.25
VPS28-212ENST00000530836 IGKV2-24A0A0C4DH68 120 aa13.51□□□□□ -0.25
VPS28-212ENST00000530836 CLEC2BQ92478 149 aa13.51□□□□□ -0.25
VPS28-212ENST00000530836 FAM168BA1KXE4 195 aa13.5□□□□□ -0.25
VPS28-212ENST00000530836 C22orf24Q9Y442 160 aa13.5□□□□□ -0.25
VPS28-212ENST00000530836 FUSP35637 526 aaKnown RBP eCLIP13.5□□□□□ -0.25
VPS28-212ENST00000530836 C7orf33Q8WU49 177 aa13.5□□□□□ -0.25
VPS28-212ENST00000530836 TRACP01848 142 aa13.49□□□□□ -0.25
VPS28-212ENST00000530836 C6orf99Q4VX62 202 aa13.49□□□□□ -0.25
VPS28-212ENST00000530836 FAM19A5Q7Z5A7 132 aaPredicted RBP13.49□□□□□ -0.25
VPS28-212ENST00000530836 MRPL55Q7Z7F7 128 aaKnown RBP13.49□□□□□ -0.25
VPS28-212ENST00000530836 IGLV5-52A0A0A0MRZ9 124 aa13.48□□□□□ -0.25
VPS28-212ENST00000530836 TRBV7-6A0A0J9YX20 115 aa13.48□□□□□ -0.25
VPS28-212ENST00000530836 ZNF73O43830 326 aaPredicted RBP13.48□□□□□ -0.25
VPS28-212ENST00000530836 LINC01620Q4KN68 170 aa13.48□□□□□ -0.25
VPS28-212ENST00000530836 DIRC1Q969H9 104 aa13.48□□□□□ -0.25
VPS28-212ENST00000530836 DYNC1H1Q14204 4646 aaKnown RBP13.47□□□□□ -0.25
VPS28-212ENST00000530836 A0A1B0GX51 115 aa13.47□□□□□ -0.25
VPS28-212ENST00000530836 KCNQ1DNQ9H478 68 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms