RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 SORL1Q92673 2214 aa3.35□□□□□ -1.87
CD44-230ENST00000528922 C19orf84I3L1E1 186 aa3.35□□□□□ -1.87
CD44-230ENST00000528922 NDUFA7O95182 113 aa3.35□□□□□ -1.87
CD44-230ENST00000528922 RPL28P46779 137 aaKnown RBP3.35□□□□□ -1.87
CD44-230ENST00000528922 DEFB114Q30KQ6 69 aa3.35□□□□□ -1.87
CD44-230ENST00000528922 MEGF8Q7Z7M0 2845 aa3.34□□□□□ -1.87
CD44-230ENST00000528922 IGHV3-64A0A075B6Q5 118 aa3.34□□□□□ -1.87
CD44-230ENST00000528922 TRAV8-3A0A0A6YYJ7 113 aa3.34□□□□□ -1.87
CD44-230ENST00000528922 TEX49A0A1B0GTD5 131 aa3.34□□□□□ -1.87
CD44-230ENST00000528922 IBA57-AS1B1ANH7 110 aa3.34□□□□□ -1.87
CD44-230ENST00000528922 JMJD7-PLA2G4BH0Y9G9 81 aa3.34□□□□□ -1.87
CD44-230ENST00000528922 HTN1P15515 57 aa3.34□□□□□ -1.87
CD44-230ENST00000528922 DEFB1P60022 68 aa3.34□□□□□ -1.87
CD44-230ENST00000528922 C11orf72Q8NBR9 251 aa3.34□□□□□ -1.87
CD44-230ENST00000528922 CDKN2A-AS1Q9UH64 79 aa3.34□□□□□ -1.87
CD44-230ENST00000528922 CELA1Q9UNI1 258 aa3.34□□□□□ -1.87
CD44-230ENST00000528922 RYR3Q15413 4870 aa3.34□□□□□ -1.88
CD44-230ENST00000528922 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.33□□□□□ -1.88
CD44-230ENST00000528922 TRGV1A0A0A0MS02 117 aa3.33□□□□□ -1.88
CD44-230ENST00000528922 IGKV2-29A2NJV5 120 aaPredicted RBP3.33□□□□□ -1.88
CD44-230ENST00000528922 SMIM9A6NGZ8 99 aa3.33□□□□□ -1.88
CD44-230ENST00000528922 KNCNA6PVL3 124 aa3.33□□□□□ -1.88
CD44-230ENST00000528922 ATOX1O00244 68 aa3.33□□□□□ -1.88
CD44-230ENST00000528922 UQCRQO14949 82 aa3.33□□□□□ -1.88
CD44-230ENST00000528922 BAALC-AS2P0C853 105 aa3.33□□□□□ -1.88
CD44-230ENST00000528922 ATP5EP2Q5VTU8 51 aa3.33□□□□□ -1.88
CD44-230ENST00000528922 COX7B2Q8TF08 81 aa3.33□□□□□ -1.88
CD44-230ENST00000528922 CDC42SE2Q9NRR3 84 aa3.33□□□□□ -1.88
CD44-230ENST00000528922 IGLV8-61A0A075B6I0 122 aa3.32□□□□□ -1.88
CD44-230ENST00000528922 TRGV2A0A075B6R0 118 aa3.32□□□□□ -1.88
CD44-230ENST00000528922 IGHV3-73A0A0B4J1V6 119 aa3.32□□□□□ -1.88
CD44-230ENST00000528922 TRGV4A0A0C4DH28 118 aa3.32□□□□□ -1.88
CD44-230ENST00000528922 COX17Q14061 63 aa3.32□□□□□ -1.88
CD44-230ENST00000528922 SS18Q15532 418 aa3.32□□□□□ -1.88
CD44-230ENST00000528922 KRTAP5-4Q6L8H1 288 aa3.32□□□□□ -1.88
CD44-230ENST00000528922 ZNF625Q96I27 306 aaPredicted RBP3.32□□□□□ -1.88
CD44-230ENST00000528922 BIRC6Q9NR09 4857 aa3.31□□□□□ -1.88
CD44-230ENST00000528922 A0A096LNT2 108 aa3.31□□□□□ -1.88
CD44-230ENST00000528922 TRAV13-1A0A0B4J241 112 aa3.31□□□□□ -1.88
CD44-230ENST00000528922 TMEM256-PLSCR3K7ERE1 68 aa3.31□□□□□ -1.88
CD44-230ENST00000528922 PDE6GP18545 87 aa3.31□□□□□ -1.88
CD44-230ENST00000528922 DEFB113Q30KQ7 82 aa3.31□□□□□ -1.88
CD44-230ENST00000528922 KIR2DL5BQ8NHK3 375 aa3.31□□□□□ -1.88
CD44-230ENST00000528922 NRGNQ92686 78 aa3.31□□□□□ -1.88
CD44-230ENST00000528922 SND1-IT1Q9HBX3 110 aa3.31□□□□□ -1.88
CD44-230ENST00000528922 ORMDL1Q9P0S3 153 aa3.31□□□□□ -1.88
CD44-230ENST00000528922 ANK2Q01484 3957 aa3.31□□□□□ -1.88
CD44-230ENST00000528922 BCE1O60756 84 aa3.3□□□□□ -1.88
CD44-230ENST00000528922 NDUFC2O95298 119 aa3.3□□□□□ -1.88
CD44-230ENST00000528922 LINC00158P58513 81 aa3.3□□□□□ -1.88
CD44-230ENST00000528922 RBMY1FQ15415 496 aaKnown RBP3.3□□□□□ -1.88
CD44-230ENST00000528922 C6orf226Q5I0X4 101 aa3.3□□□□□ -1.88
CD44-230ENST00000528922 SDIM1Q6ZPB5 146 aa3.3□□□□□ -1.88
CD44-230ENST00000528922 KRTAP11-1Q8IUC1 163 aa3.3□□□□□ -1.88
CD44-230ENST00000528922 Q8IZM0 81 aa3.3□□□□□ -1.88
CD44-230ENST00000528922 SMIM20Q8N5G0 67 aa3.3□□□□□ -1.88
CD44-230ENST00000528922 CLEC2BQ92478 149 aa3.3□□□□□ -1.88
CD44-230ENST00000528922 FAM104AQ969W3 186 aa3.3□□□□□ -1.88
CD44-230ENST00000528922 C16orf95Q9H693 158 aa3.3□□□□□ -1.88
CD44-230ENST00000528922 XCL2Q9UBD3 114 aa3.3□□□□□ -1.88
CD44-230ENST00000528922 KMT2CQ8NEZ4 4911 aaKnown RBP3.3□□□□□ -1.88
CD44-230ENST00000528922 TRBV6-8A0A0A6YYG3 113 aa3.29□□□□□ -1.88
CD44-230ENST00000528922 TRBV10-3A0A0K0K1G6 114 aa3.29□□□□□ -1.88
CD44-230ENST00000528922 F5H768 121 aa3.29□□□□□ -1.88
CD44-230ENST00000528922 KRTAP12-2P59991 146 aa3.29□□□□□ -1.88
CD44-230ENST00000528922 Q6JHZ5 121 aa3.29□□□□□ -1.88
CD44-230ENST00000528922 CEMP1Q6PRD7 247 aaPredicted RBP3.29□□□□□ -1.88
CD44-230ENST00000528922 C1orf158Q8N1D5 194 aa3.29□□□□□ -1.88
CD44-230ENST00000528922 C3orf22Q8N5N4 141 aa3.29□□□□□ -1.88
CD44-230ENST00000528922 WFDC11Q8NEX6 87 aa3.29□□□□□ -1.88
CD44-230ENST00000528922 LINC00526Q96FQ7 95 aa3.29□□□□□ -1.88
CD44-230ENST00000528922 KRTAP4-4Q9BYR3 166 aa3.29□□□□□ -1.88
CD44-230ENST00000528922 CR1P17927 2039 aa3.28□□□□□ -1.88
CD44-230ENST00000528922 HRNRQ86YZ3 2850 aaPredicted RBP3.28□□□□□ -1.88
CD44-230ENST00000528922 FAM236AA0A1B0GUQ0 79 aa3.28□□□□□ -1.88
CD44-230ENST00000528922 FAM236BA0A1B0GV22 79 aa3.28□□□□□ -1.88
CD44-230ENST00000528922 LYRM9A8MSI8 78 aa3.28□□□□□ -1.88
CD44-230ENST00000528922 COX7CP15954 63 aa3.28□□□□□ -1.88
CD44-230ENST00000528922 NPC2P61916 151 aa3.28□□□□□ -1.88
CD44-230ENST00000528922 PRR4Q16378 134 aa3.28□□□□□ -1.88
CD44-230ENST00000528922 RNASE13Q5GAN3 156 aaKnown RBP3.28□□□□□ -1.88
CD44-230ENST00000528922 C9orf153Q5TBE3 101 aa3.28□□□□□ -1.88
CD44-230ENST00000528922 C10orf99Q6UWK7 81 aa3.28□□□□□ -1.88
CD44-230ENST00000528922 C5orf38Q86SI9 138 aa3.28□□□□□ -1.88
CD44-230ENST00000528922 MIR7-3HGQ8N6C7 128 aa3.28□□□□□ -1.88
CD44-230ENST00000528922 NOP10Q9NPE3 64 aaKnown RBP3.28□□□□□ -1.88
CD44-230ENST00000528922 MAP1AP78559 2803 aaPredicted RBP3.28□□□□□ -1.88
CD44-230ENST00000528922 IGHV3OR16-9A0A0B4J2B5 98 aa3.27□□□□□ -1.89
CD44-230ENST00000528922 hADV29S1A0JD25 119 aa3.27□□□□□ -1.89
CD44-230ENST00000528922 NDUFC2-KCTD14E9PQ53 114 aa3.27□□□□□ -1.89
CD44-230ENST00000528922 IGLV1-51P01701 117 aa3.27□□□□□ -1.89
CD44-230ENST00000528922 RPS28P62857 69 aaKnown RBP3.27□□□□□ -1.89
CD44-230ENST00000528922 COX6A2Q02221 97 aa3.27□□□□□ -1.89
CD44-230ENST00000528922 Q6ZTI0 123 aa3.27□□□□□ -1.89
CD44-230ENST00000528922 OR13C6PQ8NH95 151 aa3.27□□□□□ -1.89
CD44-230ENST00000528922 DEFB104AQ8WTQ1 72 aa3.27□□□□□ -1.89
CD44-230ENST00000528922 OBSCN-AS1Q96MR7 158 aa3.27□□□□□ -1.89
CD44-230ENST00000528922 UBL5Q9BZL1 73 aa3.27□□□□□ -1.89
CD44-230ENST00000528922 TOMM7Q9P0U1 55 aa3.27□□□□□ -1.89
CD44-230ENST00000528922 PRO0255Q9UI72 69 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms