RNA–Protein interactions for RNA: ENST00000525854.5

HIF3A-209, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-209ENST00000525854 ERG28Q9UKR5 140 aa6.94□□□□□ -1.3
HIF3A-209ENST00000525854 TMA7Q9Y2S6 64 aaKnown RBP6.94□□□□□ -1.3
HIF3A-209ENST00000525854 C11orf86A6NJI1 115 aa6.93□□□□□ -1.3
HIF3A-209ENST00000525854 UBE2AP49459 152 aa6.93□□□□□ -1.3
HIF3A-209ENST00000525854 RPL24P83731 157 aaKnown RBP6.93□□□□□ -1.3
HIF3A-209ENST00000525854 COA6Q5JTJ3 125 aaKnown RBP6.93□□□□□ -1.3
HIF3A-209ENST00000525854 SND1-IT1Q9HBX3 110 aa6.93□□□□□ -1.3
HIF3A-209ENST00000525854 CHTOPQ9Y3Y2 248 aaKnown RBP6.92□□□□□ -1.3
HIF3A-209ENST00000525854 CRYGAP11844 174 aa6.91□□□□□ -1.3
HIF3A-209ENST00000525854 ZNF625Q96I27 306 aaPredicted RBP6.91□□□□□ -1.3
HIF3A-209ENST00000525854 RNF213Q63HN8 5207 aa6.91□□□□□ -1.3
HIF3A-209ENST00000525854 IGKV2-28A0A075B6P5 120 aa6.9□□□□□ -1.3
HIF3A-209ENST00000525854 TRAV12-1A0A0B4J245 112 aa6.9□□□□□ -1.3
HIF3A-209ENST00000525854 IGKV2D-28P01615 120 aa6.9□□□□□ -1.3
HIF3A-209ENST00000525854 VPREB1P12018 145 aa6.9□□□□□ -1.3
HIF3A-209ENST00000525854 KRTAP13-1Q8IUC0 172 aa6.9□□□□□ -1.3
HIF3A-209ENST00000525854 IFI27L1Q96BM0 104 aa6.9□□□□□ -1.3
HIF3A-209ENST00000525854 C20orf202A1L168 122 aa6.89□□□□□ -1.31
HIF3A-209ENST00000525854 SERF1AO75920 110 aa6.89□□□□□ -1.31
HIF3A-209ENST00000525854 LEPROTL1O95214 131 aa6.89□□□□□ -1.31
HIF3A-209ENST00000525854 A0A087X002 238 aa6.88□□□□□ -1.31
HIF3A-209ENST00000525854 TMEM223A0PJW6 202 aa6.88□□□□□ -1.31
HIF3A-209ENST00000525854 LINC00158P58513 81 aa6.88□□□□□ -1.31
HIF3A-209ENST00000525854 SNRPEP62304 92 aaKnown RBP6.88□□□□□ -1.31
HIF3A-209ENST00000525854 PRR4Q16378 134 aa6.88□□□□□ -1.31
HIF3A-209ENST00000525854 TYMSOSQ8TAI1 123 aa6.88□□□□□ -1.31
HIF3A-209ENST00000525854 MAP1LC3CQ9BXW4 147 aa6.88□□□□□ -1.31
HIF3A-209ENST00000525854 C5orf52A6NGY3 159 aa6.87□□□□□ -1.31
HIF3A-209ENST00000525854 FAM229BQ4G0N7 80 aa6.87□□□□□ -1.31
HIF3A-209ENST00000525854 TMEM126AQ9H061 195 aa6.87□□□□□ -1.31
HIF3A-209ENST00000525854 FAM19A1Q7Z5A9 133 aa6.86□□□□□ -1.31
HIF3A-209ENST00000525854 LINC00587B1AMM8 73 aa6.85□□□□□ -1.31
HIF3A-209ENST00000525854 TMEM238C9JI98 176 aa6.85□□□□□ -1.31
HIF3A-209ENST00000525854 TSPAN13O95857 204 aa6.85□□□□□ -1.31
HIF3A-209ENST00000525854 PRLHP81277 87 aa6.85□□□□□ -1.31
HIF3A-209ENST00000525854 M0R378 163 aa6.84□□□□□ -1.31
HIF3A-209ENST00000525854 FABP4P15090 132 aa6.84□□□□□ -1.31
HIF3A-209ENST00000525854 HERV-K104P63124 156 aa6.84□□□□□ -1.31
HIF3A-209ENST00000525854 HIST3H2BBQ8N257 126 aa6.84□□□□□ -1.31
HIF3A-209ENST00000525854 Q8NDZ9 215 aa6.84□□□□□ -1.31
HIF3A-209ENST00000525854 ANAPC11Q9NYG5 84 aa6.84□□□□□ -1.31
HIF3A-209ENST00000525854 IGKV2D-26A0A0A0MRZ7 120 aa6.83□□□□□ -1.32
HIF3A-209ENST00000525854 A0A0U1RRA0 63 aa6.83□□□□□ -1.32
HIF3A-209ENST00000525854 MEIG1Q5JSS6 88 aa6.83□□□□□ -1.32
HIF3A-209ENST00000525854 FAM19A2Q8N3H0 131 aa6.83□□□□□ -1.32
HIF3A-209ENST00000525854 SMIM13P0DJ93 91 aa6.82□□□□□ -1.32
HIF3A-209ENST00000525854 KRTAP13-2Q52LG2 175 aa6.82□□□□□ -1.32
HIF3A-209ENST00000525854 PET117Q6UWS5 81 aa6.82□□□□□ -1.32
HIF3A-209ENST00000525854 BOD1L2Q8IYS8 172 aa6.82□□□□□ -1.32
HIF3A-209ENST00000525854 HIST1H2BLQ99880 126 aa6.82□□□□□ -1.32
HIF3A-209ENST00000525854 LPAP08519 4548 aa6.81□□□□□ -1.32
HIF3A-209ENST00000525854 MYMXA0A1B0GTQ4 84 aa6.81□□□□□ -1.32
HIF3A-209ENST00000525854 HSBP1L1C9JCN9 74 aa6.81□□□□□ -1.32
HIF3A-209ENST00000525854 H0Y8G0 127 aa6.81□□□□□ -1.32
HIF3A-209ENST00000525854 KRTDAPP60985 99 aa6.81□□□□□ -1.32
HIF3A-209ENST00000525854 LINC00304Q8N9R0 145 aa6.81□□□□□ -1.32
HIF3A-209ENST00000525854 NDUFA12Q9UI09 145 aa6.81□□□□□ -1.32
HIF3A-209ENST00000525854 PLNP26678 52 aa6.8□□□□□ -1.32
HIF3A-209ENST00000525854 MIR7-3HGQ8N6C7 128 aa6.8□□□□□ -1.32
HIF3A-209ENST00000525854 PLEKHB2Q96CS7 222 aa6.8□□□□□ -1.32
HIF3A-209ENST00000525854 HIGD2AQ9BW72 106 aa6.8□□□□□ -1.32
HIF3A-209ENST00000525854 PRYO14603 147 aa6.79□□□□□ -1.32
HIF3A-209ENST00000525854 CTAG1AP78358 180 aa6.79□□□□□ -1.32
HIF3A-209ENST00000525854 SCGB1D1O95968 90 aa6.78□□□□□ -1.32
HIF3A-209ENST00000525854 S100A12P80511 92 aa6.78□□□□□ -1.32
HIF3A-209ENST00000525854 ZNF706Q9Y5V0 76 aaPredicted RBP6.78□□□□□ -1.32
HIF3A-209ENST00000525854 SYS1-DBNDD2H3BUS1 97 aa6.77□□□□□ -1.33
HIF3A-209ENST00000525854 NCR3O14931 201 aa6.77□□□□□ -1.33
HIF3A-209ENST00000525854 LEPROTO15243 131 aa6.77□□□□□ -1.33
HIF3A-209ENST00000525854 LINC00310P59036 64 aa6.77□□□□□ -1.33
HIF3A-209ENST00000525854 HERVK_113P61574 105 aa6.77□□□□□ -1.33
HIF3A-209ENST00000525854 LINC00337Q8N6G1 96 aa6.77□□□□□ -1.33
HIF3A-209ENST00000525854 KCNQ1DNQ9H478 68 aa6.77□□□□□ -1.33
HIF3A-209ENST00000525854 DPM2O94777 84 aa6.76□□□□□ -1.33
HIF3A-209ENST00000525854 SPRR4Q96PI1 79 aa6.76□□□□□ -1.33
HIF3A-209ENST00000525854 ETDCA0A1B0GVM5 59 aa6.75□□□□□ -1.33
HIF3A-209ENST00000525854 J3QQQ9 107 aa6.75□□□□□ -1.33
HIF3A-209ENST00000525854 C3orf79P0CE67 100 aa6.75□□□□□ -1.33
HIF3A-209ENST00000525854 SPRR1AP35321 89 aa6.75□□□□□ -1.33
HIF3A-209ENST00000525854 NMUP48645 174 aa6.75□□□□□ -1.33
HIF3A-209ENST00000525854 LOC107984156A0A0G2JMH3 177 aa6.74□□□□□ -1.33
HIF3A-209ENST00000525854 TRBV10-3A0A0K0K1G6 114 aa6.74□□□□□ -1.33
HIF3A-209ENST00000525854 IGKCP01834 107 aa6.74□□□□□ -1.33
HIF3A-209ENST00000525854 SMIM6P0DI80 62 aa6.74□□□□□ -1.33
HIF3A-209ENST00000525854 LGALS3P17931 250 aaKnown RBP6.74□□□□□ -1.33
HIF3A-209ENST00000525854 TSPEAR-AS2P59090 65 aa6.74□□□□□ -1.33
HIF3A-209ENST00000525854 JOSD1Q15040 202 aaPredicted RBP6.74□□□□□ -1.33
HIF3A-209ENST00000525854 SPAG11AQ6PDA7 123 aa6.74□□□□□ -1.33
HIF3A-209ENST00000525854 ARL17AQ8IVW1 177 aa6.74□□□□□ -1.33
HIF3A-209ENST00000525854 MIEN1Q9BRT3 115 aa6.74□□□□□ -1.33
HIF3A-209ENST00000525854 TRBV10-2A0A0K0K1G8 114 aa6.73□□□□□ -1.33
HIF3A-209ENST00000525854 LINC01545Q5VT33 79 aa6.73□□□□□ -1.33
HIF3A-209ENST00000525854 C3orf22Q8N5N4 141 aa6.73□□□□□ -1.33
HIF3A-209ENST00000525854 DAND5Q8N907 189 aa6.73□□□□□ -1.33
HIF3A-209ENST00000525854 RETNLBQ9BQ08 111 aa6.73□□□□□ -1.33
HIF3A-209ENST00000525854 PMCHL2Q9BQD1 86 aa6.73□□□□□ -1.33
HIF3A-209ENST00000525854 KRTAP4-16G5E9R7 235 aaPredicted RBP6.72□□□□□ -1.33
HIF3A-209ENST00000525854 C4orf48Q5BLP8 95 aa6.72□□□□□ -1.33
HIF3A-209ENST00000525854 SMCR5Q8TEV8 140 aa6.72□□□□□ -1.33
HIF3A-209ENST00000525854 SPANXB1Q9NS25 103 aaPredicted RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms