RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 SMCR5Q8TEV8 140 aa4□□□□□ -1.77
LSM1-202ENST00000520286 DPH3Q96FX2 82 aa4□□□□□ -1.77
LSM1-202ENST00000520286 UPK3BQ9BT76 320 aa4□□□□□ -1.77
LSM1-202ENST00000520286 KLK5Q9Y337 293 aaPredicted RBP4□□□□□ -1.77
LSM1-202ENST00000520286 HRNRQ86YZ3 2850 aaPredicted RBP3.99□□□□□ -1.77
LSM1-202ENST00000520286 A0A096LNT2 108 aa3.99□□□□□ -1.77
LSM1-202ENST00000520286 IGIPA6NJ69 53 aa3.99□□□□□ -1.77
LSM1-202ENST00000520286 J3QQQ9 107 aa3.99□□□□□ -1.77
LSM1-202ENST00000520286 ATOX1O00244 68 aa3.99□□□□□ -1.77
LSM1-202ENST00000520286 EMP1P54849 157 aa3.99□□□□□ -1.77
LSM1-202ENST00000520286 Q8TAT8 98 aa3.99□□□□□ -1.77
LSM1-202ENST00000520286 DCANP1Q8TF63 244 aa3.99□□□□□ -1.77
LSM1-202ENST00000520286 TMEM141Q96I45 108 aa3.99□□□□□ -1.77
LSM1-202ENST00000520286 LINC00527Q9UJ94 153 aa3.99□□□□□ -1.77
LSM1-202ENST00000520286 CUBNO60494 3623 aa3.99□□□□□ -1.77
LSM1-202ENST00000520286 ANK3Q12955 4377 aaKnown RBP3.98□□□□□ -1.77
LSM1-202ENST00000520286 IGLV3-9A0A075B6K5 115 aa3.98□□□□□ -1.77
LSM1-202ENST00000520286 TRAV26-2A0A0B4J265 109 aa3.98□□□□□ -1.77
LSM1-202ENST00000520286 IGHV1-18A0A0C4DH31 117 aa3.98□□□□□ -1.77
LSM1-202ENST00000520286 ZNF22P17026 224 aaPredicted RBP3.98□□□□□ -1.77
LSM1-202ENST00000520286 KRTAP13-3Q3SY46 172 aa3.98□□□□□ -1.77
LSM1-202ENST00000520286 MUSTN1Q8IVN3 82 aa3.98□□□□□ -1.77
LSM1-202ENST00000520286 DAND5Q8N907 189 aa3.98□□□□□ -1.77
LSM1-202ENST00000520286 PHLDA3Q9Y5J5 127 aa3.98□□□□□ -1.77
LSM1-202ENST00000520286 PKD1L1Q8TDX9 2849 aa3.97□□□□□ -1.77
LSM1-202ENST00000520286 LY6LH3BQJ8 138 aa3.97□□□□□ -1.77
LSM1-202ENST00000520286 LYZL6O75951 148 aa3.97□□□□□ -1.77
LSM1-202ENST00000520286 PPP1R17O96001 155 aa3.97□□□□□ -1.77
LSM1-202ENST00000520286 IGHV1-69P01742 117 aa3.97□□□□□ -1.77
LSM1-202ENST00000520286 TRACP01848 142 aa3.97□□□□□ -1.77
LSM1-202ENST00000520286 LGALS3P17931 250 aaKnown RBP3.97□□□□□ -1.77
LSM1-202ENST00000520286 DYNAPQ8N1N2 210 aa3.97□□□□□ -1.77
LSM1-202ENST00000520286 CYSTM1Q9H1C7 97 aa3.97□□□□□ -1.77
LSM1-202ENST00000520286 TGP01266 2768 aa3.96□□□□□ -1.78
LSM1-202ENST00000520286 TRBV7-1A0A0A6YYK4 115 aa3.96□□□□□ -1.78
LSM1-202ENST00000520286 hADV29S1A0JD25 119 aa3.96□□□□□ -1.78
LSM1-202ENST00000520286 GPHB5Q86YW7 130 aa3.96□□□□□ -1.78
LSM1-202ENST00000520286 CCL13Q99616 98 aa3.96□□□□□ -1.78
LSM1-202ENST00000520286 DPH3P1Q9H4G8 78 aa3.96□□□□□ -1.78
LSM1-202ENST00000520286 R4GN34 69 aa3.96□□□□□ -1.78
LSM1-202ENST00000520286 MGAM2Q2M2H8 2515 aa3.95□□□□□ -1.78
LSM1-202ENST00000520286 COX6CP09669 75 aa3.95□□□□□ -1.78
LSM1-202ENST00000520286 CCL3L1P16619 93 aa3.95□□□□□ -1.78
LSM1-202ENST00000520286 PSMB8P28062 276 aa3.95□□□□□ -1.78
LSM1-202ENST00000520286 POLR2KP53803 58 aaKnown RBP3.95□□□□□ -1.78
LSM1-202ENST00000520286 DAD1P61803 113 aa3.95□□□□□ -1.78
LSM1-202ENST00000520286 CCL8P80075 99 aa3.95□□□□□ -1.78
LSM1-202ENST00000520286 KLK9Q2XQG4 91 aa3.95□□□□□ -1.78
LSM1-202ENST00000520286 Q6JHZ5 121 aa3.95□□□□□ -1.78
LSM1-202ENST00000520286 SERP2Q8N6R1 65 aa3.95□□□□□ -1.78
LSM1-202ENST00000520286 RPL39LQ96EH5 51 aaKnown RBP3.95□□□□□ -1.78
LSM1-202ENST00000520286 TIMM21Q9BVV7 248 aa3.95□□□□□ -1.78
LSM1-202ENST00000520286 KLK9Q9UKQ9 250 aa3.95□□□□□ -1.78
LSM1-202ENST00000520286 LENEPQ9Y5L5 61 aa3.95□□□□□ -1.78
LSM1-202ENST00000520286 TRBV6-5A0A0K0K1A5 114 aa3.94□□□□□ -1.78
LSM1-202ENST00000520286 I3L3M4 83 aa3.94□□□□□ -1.78
LSM1-202ENST00000520286 TIMM17BO60830 172 aa3.94□□□□□ -1.78
LSM1-202ENST00000520286 PRB4P10163 310 aaPredicted RBP3.94□□□□□ -1.78
LSM1-202ENST00000520286 MIAQ16674 131 aa3.94□□□□□ -1.78
LSM1-202ENST00000520286 SPANXN1Q5VSR9 72 aa3.94□□□□□ -1.78
LSM1-202ENST00000520286 HRCT1Q6UXD1 115 aa3.94□□□□□ -1.78
LSM1-202ENST00000520286 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.94□□□□□ -1.78
LSM1-202ENST00000520286 Q6ZRU5 148 aa3.94□□□□□ -1.78
LSM1-202ENST00000520286 CLEC2BQ92478 149 aa3.94□□□□□ -1.78
LSM1-202ENST00000520286 DYNLRB1Q9NP97 96 aa3.94□□□□□ -1.78
LSM1-202ENST00000520286 C22orf24Q9Y442 160 aa3.94□□□□□ -1.78
LSM1-202ENST00000520286 LINC00588Q9Y4M8 146 aa3.94□□□□□ -1.78
LSM1-202ENST00000520286 H7C2G1 150 aa3.93□□□□□ -1.78
LSM1-202ENST00000520286 RHOHQ15669 191 aa3.93□□□□□ -1.78
LSM1-202ENST00000520286 ABCA1O95477 2261 aa3.93□□□□□ -1.78
LSM1-202ENST00000520286 NOTCH1P46531 2555 aa3.93□□□□□ -1.78
LSM1-202ENST00000520286 NBEAL2Q6ZNJ1 2754 aa3.92□□□□□ -1.78
LSM1-202ENST00000520286 TRAV13-1A0A0B4J241 112 aa3.92□□□□□ -1.78
LSM1-202ENST00000520286 TRBV27A0A0K0K1C4 114 aa3.92□□□□□ -1.78
LSM1-202ENST00000520286 COX7A2LO14548 114 aa3.92□□□□□ -1.78
LSM1-202ENST00000520286 NDUFC2O95298 119 aa3.92□□□□□ -1.78
LSM1-202ENST00000520286 APELAP0DMC3 54 aa3.92□□□□□ -1.78
LSM1-202ENST00000520286 HRES1P13985 223 aa3.92□□□□□ -1.78
LSM1-202ENST00000520286 RNASE4P34096 147 aaKnown RBP3.92□□□□□ -1.78
LSM1-202ENST00000520286 KRTAP25-1Q3LHN0 102 aa3.92□□□□□ -1.78
LSM1-202ENST00000520286 DSCR8Q96T75 97 aa3.92□□□□□ -1.78
LSM1-202ENST00000520286 KAAG1Q9UBP8 84 aa3.92□□□□□ -1.78
LSM1-202ENST00000520286 ANK2Q01484 3957 aa3.91□□□□□ -1.78
LSM1-202ENST00000520286 TRAV41A0A0B4J266 112 aa3.91□□□□□ -1.78
LSM1-202ENST00000520286 LECT2O14960 151 aa3.91□□□□□ -1.78
LSM1-202ENST00000520286 BSPH1Q075Z2 132 aa3.91□□□□□ -1.78
LSM1-202ENST00000520286 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.91□□□□□ -1.782e-10■■■■□ 21.5
LSM1-202ENST00000520286 TMEM86BQ8N661 226 aa3.91□□□□□ -1.78
LSM1-202ENST00000520286 DEFB108BQ8NET1 73 aa3.91□□□□□ -1.78
LSM1-202ENST00000520286 OBSCN-AS1Q96MR7 158 aa3.91□□□□□ -1.78
LSM1-202ENST00000520286 PLXNB1O43157 2135 aa3.9□□□□□ -1.79
LSM1-202ENST00000520286 CTSGP08311 255 aa3.9□□□□□ -1.79
LSM1-202ENST00000520286 IGHV3-30-3P0DP02 117 aa3.9□□□□□ -1.79
LSM1-202ENST00000520286 RPL39P62891 51 aaKnown RBP3.9□□□□□ -1.79
LSM1-202ENST00000520286 MRPS36P82909 103 aaKnown RBP3.9□□□□□ -1.79
LSM1-202ENST00000520286 ZFAND2AQ8N6M9 145 aa3.9□□□□□ -1.79
LSM1-202ENST00000520286 C10orf105Q8TEF2 133 aa3.9□□□□□ -1.79
LSM1-202ENST00000520286 SERP1Q9Y6X1 66 aa3.9□□□□□ -1.79
LSM1-202ENST00000520286 DNAJC13O75165 2243 aa3.9□□□□□ -1.79
LSM1-202ENST00000520286 SVEP1Q4LDE5 3571 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms