RNA–Protein interactions for RNA: ENST00000504131.6

CLCN3-204, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 5 BASIC

Gene CLCN3, Length 5,592 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-204ENST00000504131 LYNX1G3V0Z9 82 aa4.19□□□□□ -1.74
CLCN3-204ENST00000504131 IGLV2-23P01705 113 aa4.19□□□□□ -1.74
CLCN3-204ENST00000504131 LYNX1P0DP58 116 aa4.19□□□□□ -1.74
CLCN3-204ENST00000504131 C9orf129Q5T035 196 aaKnown RBP4.19□□□□□ -1.74
CLCN3-204ENST00000504131 IGKV1-17P01599 117 aa4.19□□□□□ -1.74
CLCN3-204ENST00000504131 NCOR2Q9Y618 2525 aa4.19□□□□□ -1.74
CLCN3-204ENST00000504131 SPINK13Q1W4C9 94 aa4.19□□□□□ -1.74
CLCN3-204ENST00000504131 C7orf33Q8WU49 177 aa4.19□□□□□ -1.74
CLCN3-204ENST00000504131 MED13LQ71F56 2210 aa4.18□□□□□ -1.74
CLCN3-204ENST00000504131 LITAFQ99732 161 aa4.18□□□□□ -1.74
CLCN3-204ENST00000504131 CEP192Q8TEP8 1941 aa4.18□□□□□ -1.74
CLCN3-204ENST00000504131 NOTCH2NLQ7Z3S9 236 aa4.18□□□□□ -1.74
CLCN3-204ENST00000504131 C1orf137Q5JT78 98 aa4.18□□□□□ -1.74
CLCN3-204ENST00000504131 AMELXQ99217 191 aa4.18□□□□□ -1.74
CLCN3-204ENST00000504131 DSCAMO60469 2012 aa4.18□□□□□ -1.74
CLCN3-204ENST00000504131 LRP4O75096 1905 aa4.17□□□□□ -1.74
CLCN3-204ENST00000504131 A0A1W2PNU3 283 aaPredicted RBP4.17□□□□□ -1.74
CLCN3-204ENST00000504131 CTSGP08311 255 aa4.17□□□□□ -1.74
CLCN3-204ENST00000504131 KRTAP25-1Q3LHN0 102 aa4.17□□□□□ -1.74
CLCN3-204ENST00000504131 ST20-AS1Q8NBB2 130 aa4.17□□□□□ -1.74
CLCN3-204ENST00000504131 CPAMD8Q8IZJ3 1885 aa4.17□□□□□ -1.74
CLCN3-204ENST00000504131 M0QY20 66 aa4.17□□□□□ -1.74
CLCN3-204ENST00000504131 SPINK1P00995 79 aa4.17□□□□□ -1.74
CLCN3-204ENST00000504131 K7EIM0 57 aa4.17□□□□□ -1.74
CLCN3-204ENST00000504131 CENPFP49454 3210 aa4.17□□□□□ -1.74
CLCN3-204ENST00000504131 IGLV1-44P01699 117 aa4.17□□□□□ -1.74
CLCN3-204ENST00000504131 LINC00959A0A1B0GUT2 108 aa4.16□□□□□ -1.74
CLCN3-204ENST00000504131 OBSCN-AS1Q96MR7 158 aa4.16□□□□□ -1.74
CLCN3-204ENST00000504131 PRLHP81277 87 aa4.16□□□□□ -1.74
CLCN3-204ENST00000504131 DEFB114Q30KQ6 69 aa4.16□□□□□ -1.74
CLCN3-204ENST00000504131 HIVEP2P31629 2446 aa4.16□□□□□ -1.74
CLCN3-204ENST00000504131 AKAP6Q13023 2319 aa4.16□□□□□ -1.74
CLCN3-204ENST00000504131 NPBQ8NG41 125 aa4.16□□□□□ -1.74
CLCN3-204ENST00000504131 C20orf166-AS1Q96NR2 134 aa4.16□□□□□ -1.74
CLCN3-204ENST00000504131 ZNF407Q9C0G0 2248 aa4.16□□□□□ -1.74
CLCN3-204ENST00000504131 PCNX1Q96RV3 2341 aa4.16□□□□□ -1.74
CLCN3-204ENST00000504131 COL27A1Q8IZC6 1860 aaPredicted RBP4.16□□□□□ -1.74
CLCN3-204ENST00000504131 COL5A1P20908 1838 aaPredicted RBP4.15□□□□□ -1.74
CLCN3-204ENST00000504131 BRD3OSQ6XYD6 125 aa4.15□□□□□ -1.74
CLCN3-204ENST00000504131 Q6ZR54 194 aa4.15□□□□□ -1.75
CLCN3-204ENST00000504131 MAPK1IP1LQ8NDC0 245 aa4.15□□□□□ -1.75
CLCN3-204ENST00000504131 TP53AIP1Q9HCN2 124 aa4.14□□□□□ -1.75
CLCN3-204ENST00000504131 WNK2Q9Y3S1 2297 aa4.14□□□□□ -1.75
CLCN3-204ENST00000504131 SPART-AS1P0CW21 52 aa4.14□□□□□ -1.75
CLCN3-204ENST00000504131 KPRPQ5T749 579 aaPredicted RBP4.14□□□□□ -1.75
CLCN3-204ENST00000504131 COX6A2Q02221 97 aa4.14□□□□□ -1.75
CLCN3-204ENST00000504131 RHPN1-AS1Q9BWJ2 59 aa4.13□□□□□ -1.75
CLCN3-204ENST00000504131 A0A1W2PNM2 257 aa4.13□□□□□ -1.75
CLCN3-204ENST00000504131 DEFB1P60022 68 aa4.13□□□□□ -1.75
CLCN3-204ENST00000504131 PLCE1Q9P212 2302 aa4.13□□□□□ -1.75
CLCN3-204ENST00000504131 IGKV2D-24A0A075B6R9 120 aa4.13□□□□□ -1.75
CLCN3-204ENST00000504131 Q8IZM0 81 aa4.13□□□□□ -1.75
CLCN3-204ENST00000504131 A0A087X002 238 aa4.13□□□□□ -1.75
CLCN3-204ENST00000504131 ANGP03950 147 aaKnown RBP4.13□□□□□ -1.75
CLCN3-204ENST00000504131 G3V318 75 aa4.12□□□□□ -1.75
CLCN3-204ENST00000504131 PKDREJQ9NTG1 2253 aa4.12□□□□□ -1.75
CLCN3-204ENST00000504131 USF3Q68DE3 2245 aa4.12□□□□□ -1.75
CLCN3-204ENST00000504131 A8MTW9 85 aa4.12□□□□□ -1.75
CLCN3-204ENST00000504131 K7EQZ3 153 aa4.12□□□□□ -1.75
CLCN3-204ENST00000504131 C9orf163Q8N9P6 203 aa4.12□□□□□ -1.75
CLCN3-204ENST00000504131 CHD8Q9HCK8 2581 aa4.12□□□□□ -1.75
CLCN3-204ENST00000504131 PCSK5Q92824 1860 aa4.11□□□□□ -1.75
CLCN3-204ENST00000504131 CHD7Q9P2D1 2997 aa4.11□□□□□ -1.75
CLCN3-204ENST00000504131 ATRXP46100 2492 aa4.11□□□□□ -1.75
CLCN3-204ENST00000504131 SLURP1P55000 103 aa4.11□□□□□ -1.75
CLCN3-204ENST00000504131 CEP350Q5VT06 3117 aa4.1□□□□□ -1.75
CLCN3-204ENST00000504131 LINC00483Q53H64 154 aa4.1□□□□□ -1.75
CLCN3-204ENST00000504131 CASC10Q5T4H9 136 aa4.1□□□□□ -1.75
CLCN3-204ENST00000504131 PTPN13Q12923 2485 aa4.09□□□□□ -1.75
CLCN3-204ENST00000504131 SPG11Q96JI7 2443 aa4.09□□□□□ -1.75
CLCN3-204ENST00000504131 IGLV1-47P01700 117 aa4.09□□□□□ -1.75
CLCN3-204ENST00000504131 DEFB130BP0DP73 79 aa4.09□□□□□ -1.75
CLCN3-204ENST00000504131 DEFB130AP0DP74 79 aa4.09□□□□□ -1.75
CLCN3-204ENST00000504131 ADAMTS20P59510 1910 aa4.09□□□□□ -1.75
CLCN3-204ENST00000504131 IGKV2-28A0A075B6P5 120 aa4.09□□□□□ -1.76
CLCN3-204ENST00000504131 IGKV2D-28P01615 120 aa4.09□□□□□ -1.76
CLCN3-204ENST00000504131 PRR9Q5T870 116 aa4.08□□□□□ -1.76
CLCN3-204ENST00000504131 ROS1P08922 2347 aa4.08□□□□□ -1.76
CLCN3-204ENST00000504131 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.08□□□□□ -1.76
CLCN3-204ENST00000504131 PRRC2AP48634 2157 aaKnown RBP4.08□□□□□ -1.76
CLCN3-204ENST00000504131 A0A087WSZ3 146 aa4.08□□□□□ -1.76
CLCN3-204ENST00000504131 KCNQ1DNQ9H478 68 aa4.08□□□□□ -1.76
CLCN3-204ENST00000504131 EGFEM1PQ0D2K5 195 aa4.07□□□□□ -1.76
CLCN3-204ENST00000504131 ZFP36P26651 326 aaKnown RBP4.07□□□□□ -1.76
CLCN3-204ENST00000504131 DEFB131AP59861 70 aa4.07□□□□□ -1.76
CLCN3-204ENST00000504131 M0R2N4 97 aa4.06□□□□□ -1.76
CLCN3-204ENST00000504131 FAM104AQ969W3 186 aa4.06□□□□□ -1.76
CLCN3-204ENST00000504131 IGF2RP11717 2491 aa4.06□□□□□ -1.76
CLCN3-204ENST00000504131 ANKHD1Q8IWZ3 2542 aaKnown RBP4.06□□□□□ -1.76
CLCN3-204ENST00000504131 MALRD1Q5VYJ5 2156 aa4.05□□□□□ -1.76
CLCN3-204ENST00000504131 PROK1P58294 105 aa4.05□□□□□ -1.76
CLCN3-204ENST00000504131 DOPEY2Q9Y3R5 2298 aa4.05□□□□□ -1.76
CLCN3-204ENST00000504131 SPTBN5Q9NRC6 3674 aaKnown RBP4.05□□□□□ -1.76
CLCN3-204ENST00000504131 A0A096LNI7 61 aa4.05□□□□□ -1.76
CLCN3-204ENST00000504131 A0A096LPF7 62 aa4.04□□□□□ -1.76
CLCN3-204ENST00000504131 NAV2Q8IVL1 2488 aa4.04□□□□□ -1.76
CLCN3-204ENST00000504131 A0A1B0GVX0 72 aa4.04□□□□□ -1.76
CLCN3-204ENST00000504131 DEFB131BA0A096LNP1 70 aa4.03□□□□□ -1.76
CLCN3-204ENST00000504131 ODF3BA8MYP8 253 aa4.03□□□□□ -1.76
CLCN3-204ENST00000504131 Q6YL49 198 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms