RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.16□□□□□ -1.1
VPS52-220ENST00000493674 NPC2P61916 151 aa8.16□□□□□ -1.1
VPS52-220ENST00000493674 TNP2Q05952 138 aa8.16□□□□□ -1.1
VPS52-220ENST00000493674 Q6ZRP5 223 aa8.16□□□□□ -1.1
VPS52-220ENST00000493674 C9orf163Q8N9P6 203 aa8.16□□□□□ -1.1
VPS52-220ENST00000493674 EPPK1P58107 5090 aaKnown RBP8.15□□□□□ -1.1
VPS52-220ENST00000493674 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.15□□□□□ -1.1
VPS52-220ENST00000493674 TMEM238LA0A1B0GVL6 79 aa8.15□□□□□ -1.1
VPS52-220ENST00000493674 A6NJY4 79 aa8.15□□□□□ -1.1
VPS52-220ENST00000493674 A0A0B4J2C4 111 aa8.14□□□□□ -1.11
VPS52-220ENST00000493674 LOC107984640A0A0U1RRK4 108 aa8.14□□□□□ -1.11
VPS52-220ENST00000493674 BATFQ16520 125 aa8.14□□□□□ -1.11
VPS52-220ENST00000493674 Q8NDZ9 215 aa8.14□□□□□ -1.11
VPS52-220ENST00000493674 DNAH8Q96JB1 4490 aa8.13□□□□□ -1.11
VPS52-220ENST00000493674 A6NDN8 102 aa8.13□□□□□ -1.11
VPS52-220ENST00000493674 NDUFC2O95298 119 aa8.13□□□□□ -1.11
VPS52-220ENST00000493674 CFC1BP0CG36 223 aa8.13□□□□□ -1.11
VPS52-220ENST00000493674 CFC1P0CG37 223 aa8.13□□□□□ -1.11
VPS52-220ENST00000493674 C9orf129Q5T035 196 aaKnown RBP8.13□□□□□ -1.11
VPS52-220ENST00000493674 NHP2Q9NX24 153 aaKnown RBP8.13□□□□□ -1.11
VPS52-220ENST00000493674 PKHD1P08F94 4074 aa8.11□□□□□ -1.11
VPS52-220ENST00000493674 IGKV2-28A0A075B6P5 120 aa8.11□□□□□ -1.11
VPS52-220ENST00000493674 K7ERJ3 54 aa8.11□□□□□ -1.11
VPS52-220ENST00000493674 IGKV2D-28P01615 120 aa8.11□□□□□ -1.11
VPS52-220ENST00000493674 RPL18AQ02543 176 aaKnown RBP8.11□□□□□ -1.11
VPS52-220ENST00000493674 XAGE1AQ9HD64 81 aa8.11□□□□□ -1.11
VPS52-220ENST00000493674 PLA2G2DQ9UNK4 145 aa8.11□□□□□ -1.11
VPS52-220ENST00000493674 PKIGQ9Y2B9 76 aa8.11□□□□□ -1.11
VPS52-220ENST00000493674 C16orf90A8MZG2 172 aa8.1□□□□□ -1.11
VPS52-220ENST00000493674 VPREB1P12018 145 aa8.1□□□□□ -1.11
VPS52-220ENST00000493674 GAGE2EQ4V326 116 aa8.1□□□□□ -1.11
VPS52-220ENST00000493674 SDIM1Q6ZPB5 146 aa8.1□□□□□ -1.11
VPS52-220ENST00000493674 GAGE2DQ9UEU5 116 aa8.1□□□□□ -1.11
VPS52-220ENST00000493674 A0A096LNI7 61 aa8.09□□□□□ -1.11
VPS52-220ENST00000493674 TAX1BP3O14907 124 aa8.09□□□□□ -1.11
VPS52-220ENST00000493674 IGLV5-37A0A075B6J1 123 aa8.08□□□□□ -1.12
VPS52-220ENST00000493674 TRBV10-2A0A0K0K1G8 114 aa8.08□□□□□ -1.12
VPS52-220ENST00000493674 KRTAP7-1Q8IUC3 87 aa8.08□□□□□ -1.12
VPS52-220ENST00000493674 LINC00337Q8N6G1 96 aa8.08□□□□□ -1.12
VPS52-220ENST00000493674 PRO1854Q9UHT4 67 aa8.08□□□□□ -1.12
VPS52-220ENST00000493674 BIRC6Q9NR09 4857 aa8.08□□□□□ -1.12
VPS52-220ENST00000493674 KRTAP10-2P60368 255 aa8.07□□□□□ -1.12
VPS52-220ENST00000493674 GAGE2BQ13066 116 aa8.07□□□□□ -1.12
VPS52-220ENST00000493674 UBE2V1Q13404 147 aa8.07□□□□□ -1.12
VPS52-220ENST00000493674 IGLV5-52A0A0A0MRZ9 124 aa8.06□□□□□ -1.12
VPS52-220ENST00000493674 LINC01620Q4KN68 170 aa8.06□□□□□ -1.12
VPS52-220ENST00000493674 SERTAD4-AS1Q5TG53 156 aa8.06□□□□□ -1.12
VPS52-220ENST00000493674 RAB37Q96AX2 223 aa8.06□□□□□ -1.12
VPS52-220ENST00000493674 TRAV13-2A0A0B4J235 113 aa8.05□□□□□ -1.12
VPS52-220ENST00000493674 A0A1B0GVY2 172 aa8.05□□□□□ -1.12
VPS52-220ENST00000493674 EPM2AB3EWF7 344 aa8.05□□□□□ -1.12
VPS52-220ENST00000493674 FUSP35637 526 aaKnown RBP eCLIP8.05□□□□□ -1.12
VPS52-220ENST00000493674 PRR3P79522 188 aaKnown RBP8.05□□□□□ -1.12
VPS52-220ENST00000493674 FAM168BA1KXE4 195 aa8.04□□□□□ -1.12
VPS52-220ENST00000493674 TSPAN13O95857 204 aa8.04□□□□□ -1.12
VPS52-220ENST00000493674 RPL13AP40429 203 aaKnown RBP8.04□□□□□ -1.12
VPS52-220ENST00000493674 PGPEP1Q9NXJ5 209 aa8.04□□□□□ -1.12
VPS52-220ENST00000493674 C9orf118A6NHY6 69 aa8.03□□□□□ -1.12
VPS52-220ENST00000493674 PANO1I0J062 215 aa8.03□□□□□ -1.12
VPS52-220ENST00000493674 NCR3O14931 201 aa8.03□□□□□ -1.12
VPS52-220ENST00000493674 IGLV6-57P01721 117 aa8.03□□□□□ -1.12
VPS52-220ENST00000493674 CHTF8P0CG12 524 aa8.03□□□□□ -1.12
VPS52-220ENST00000493674 SPACA4Q8TDM5 124 aa8.03□□□□□ -1.12
VPS52-220ENST00000493674 LINC00474Q9P2X8 69 aa8.03□□□□□ -1.12
VPS52-220ENST00000493674 IGKV2-24A0A0C4DH68 120 aa8.02□□□□□ -1.13
VPS52-220ENST00000493674 M0R378 163 aa8.02□□□□□ -1.13
VPS52-220ENST00000493674 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.02□□□□□ -1.13
VPS52-220ENST00000493674 DYNC1H1Q14204 4646 aaKnown RBP8.02□□□□□ -1.13
VPS52-220ENST00000493674 A0A1W2PNN7 141 aa8.01□□□□□ -1.13
VPS52-220ENST00000493674 C7orf33Q8WU49 177 aa8□□□□□ -1.13
VPS52-220ENST00000493674 TMEM126AQ9H061 195 aa8□□□□□ -1.13
VPS52-220ENST00000493674 TRBV10-3A0A0K0K1G6 114 aa7.99□□□□□ -1.13
VPS52-220ENST00000493674 H3BUT2 72 aa7.99□□□□□ -1.13
VPS52-220ENST00000493674 RPL28P46779 137 aaKnown RBP7.99□□□□□ -1.13
VPS52-220ENST00000493674 Q6ZSA8 131 aa7.99□□□□□ -1.13
VPS52-220ENST00000493674 FAM19A5Q7Z5A7 132 aaPredicted RBP7.99□□□□□ -1.13
VPS52-220ENST00000493674 NKAPP1Q8N9T2 125 aa7.99□□□□□ -1.13
VPS52-220ENST00000493674 C22orf24Q9Y442 160 aa7.99□□□□□ -1.13
VPS52-220ENST00000493674 SMIM11BQ8TCY0 68 aa7.98□□□□□ -1.13
VPS52-220ENST00000493674 NAA38Q9BRA0 125 aaKnown RBP7.98□□□□□ -1.13
VPS52-220ENST00000493674 LRP1BQ9NZR2 4599 aa7.97□□□□□ -1.13
VPS52-220ENST00000493674 A0A1W2PPM0 123 aa7.97□□□□□ -1.13
VPS52-220ENST00000493674 H7C2G1 150 aa7.97□□□□□ -1.13
VPS52-220ENST00000493674 TRIAP1O43715 76 aa7.97□□□□□ -1.13
VPS52-220ENST00000493674 S100A7L2Q5SY68 101 aa7.97□□□□□ -1.13
VPS52-220ENST00000493674 MRPL55Q7Z7F7 128 aaKnown RBP7.97□□□□□ -1.13
VPS52-220ENST00000493674 OR13C6PQ8NH95 151 aa7.97□□□□□ -1.13
VPS52-220ENST00000493674 PLAC8Q9NZF1 115 aa7.97□□□□□ -1.13
VPS52-220ENST00000493674 M0QXV9 152 aa7.96□□□□□ -1.14
VPS52-220ENST00000493674 KRTAP10-1P60331 282 aa7.96□□□□□ -1.14
VPS52-220ENST00000493674 Q1RN00 199 aa7.96□□□□□ -1.14
VPS52-220ENST00000493674 LINC00167Q96N53 147 aa7.96□□□□□ -1.14
VPS52-220ENST00000493674 IGLV1-50A0A075B6I6 118 aa7.95□□□□□ -1.14
VPS52-220ENST00000493674 VAMP3Q15836 100 aa7.95□□□□□ -1.14
VPS52-220ENST00000493674 KCNQ1DNQ9H478 68 aa7.95□□□□□ -1.14
VPS52-220ENST00000493674 TRAV23DV6A0A075B6W5 121 aa7.94□□□□□ -1.14
VPS52-220ENST00000493674 A0A087WYN8 130 aa7.94□□□□□ -1.14
VPS52-220ENST00000493674 OCIAD2Q56VL3 154 aa7.94□□□□□ -1.14
VPS52-220ENST00000493674 K7ERU9 68 aa7.93□□□□□ -1.14
VPS52-220ENST00000493674 PRYO14603 147 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms