RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 C9orf129Q5T035 196 aaKnown RBP5.06□□□□□ -1.6
SYNE1-228ENST00000490135 Q96NJ1 140 aa5.05□□□□□ -1.6
SYNE1-228ENST00000490135 KIAA0087Q14695 138 aa5.05□□□□□ -1.6
SYNE1-228ENST00000490135 C11orf71Q6IPW1 123 aa5.05□□□□□ -1.6
SYNE1-228ENST00000490135 Q6ZRP5 223 aa5.05□□□□□ -1.6
SYNE1-228ENST00000490135 ODF3L2Q3SX64 289 aa5.05□□□□□ -1.6
SYNE1-228ENST00000490135 Q8NBF4 154 aa5.04□□□□□ -1.6
SYNE1-228ENST00000490135 IGLV1-51P01701 117 aa5.04□□□□□ -1.6
SYNE1-228ENST00000490135 DSCAMO60469 2012 aa5.04□□□□□ -1.6
SYNE1-228ENST00000490135 A0A1B0GUV1 79 aa5.04□□□□□ -1.6
SYNE1-228ENST00000490135 EPM2AB3EWF7 344 aa5.04□□□□□ -1.6
SYNE1-228ENST00000490135 COA5Q86WW8 74 aa5.04□□□□□ -1.6
SYNE1-228ENST00000490135 A8MTW9 85 aa5.03□□□□□ -1.6
SYNE1-228ENST00000490135 CACNA1HO95180 2353 aa5.03□□□□□ -1.6
SYNE1-228ENST00000490135 OBSCN-AS1Q96MR7 158 aa5.03□□□□□ -1.6
SYNE1-228ENST00000490135 C2orf16Q68DN1 1984 aa5.03□□□□□ -1.6
SYNE1-228ENST00000490135 C16orf90A8MZG2 172 aa5.02□□□□□ -1.61
SYNE1-228ENST00000490135 EYSQ5T1H1 3165 aa5.02□□□□□ -1.61
SYNE1-228ENST00000490135 LUZP6Q538Z0 58 aa5.02□□□□□ -1.61
SYNE1-228ENST00000490135 DNAH12Q6ZR08 3092 aa5.01□□□□□ -1.61
SYNE1-228ENST00000490135 ELOF1P60002 83 aaKnown RBP5.01□□□□□ -1.61
SYNE1-228ENST00000490135 SMR3AQ99954 134 aa5.01□□□□□ -1.61
SYNE1-228ENST00000490135 IGLV5-45A0A087WSX0 123 aa5.01□□□□□ -1.61
SYNE1-228ENST00000490135 LINC00315P59091 139 aa5.01□□□□□ -1.61
SYNE1-228ENST00000490135 TET2Q6N021 2002 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-228ENST00000490135 A0A1B0GW54 56 aa5.01□□□□□ -1.61
SYNE1-228ENST00000490135 WNK1Q9H4A3 2382 aa5.01□□□□□ -1.61
SYNE1-228ENST00000490135 UQCR11O14957 56 aa5□□□□□ -1.61
SYNE1-228ENST00000490135 Q75L30 129 aa5□□□□□ -1.61
SYNE1-228ENST00000490135 PRAC1Q96KF2 57 aa5□□□□□ -1.61
SYNE1-228ENST00000490135 A0A1W2PNU3 283 aaPredicted RBP5□□□□□ -1.61
SYNE1-228ENST00000490135 SORL1Q92673 2214 aa5□□□□□ -1.61
SYNE1-228ENST00000490135 Q5VV11 94 aa5□□□□□ -1.61
SYNE1-228ENST00000490135 LINC00167Q96N53 147 aa5□□□□□ -1.61
SYNE1-228ENST00000490135 LAMA3Q16787 3333 aa4.99□□□□□ -1.61
SYNE1-228ENST00000490135 SZT2Q5T011 3432 aa4.99□□□□□ -1.61
SYNE1-228ENST00000490135 TNRC18O15417 2968 aaPredicted RBP4.99□□□□□ -1.61
SYNE1-228ENST00000490135 NOTCH4Q99466 2003 aa4.98□□□□□ -1.61
SYNE1-228ENST00000490135 RTL8CO15255 209 aa4.98□□□□□ -1.61
SYNE1-228ENST00000490135 MUC22E2RYF6 1773 aaPredicted RBP4.98□□□□□ -1.61
SYNE1-228ENST00000490135 PRR26Q8N8Z3 221 aa4.98□□□□□ -1.61
SYNE1-228ENST00000490135 Q6ZSN1 163 aa4.97□□□□□ -1.61
SYNE1-228ENST00000490135 RIF1Q5UIP0 2472 aaKnown RBP4.97□□□□□ -1.61
SYNE1-228ENST00000490135 PHF5AQ7RTV0 110 aaKnown RBP4.97□□□□□ -1.61
SYNE1-228ENST00000490135 LINC00476Q8WZB0 136 aa4.97□□□□□ -1.61
SYNE1-228ENST00000490135 NBASA2RRP1 2371 aa4.97□□□□□ -1.61
SYNE1-228ENST00000490135 RPL37AP61513 92 aaKnown RBP4.96□□□□□ -1.61
SYNE1-228ENST00000490135 CHTF8P0CG12 524 aa4.96□□□□□ -1.62
SYNE1-228ENST00000490135 MIR22HGQ0VDD5 57 aa4.96□□□□□ -1.62
SYNE1-228ENST00000490135 LRP4O75096 1905 aa4.95□□□□□ -1.62
SYNE1-228ENST00000490135 IGLV6-57P01721 117 aa4.95□□□□□ -1.62
SYNE1-228ENST00000490135 CSNK1G2-AS1Q8NCQ2 148 aa4.95□□□□□ -1.62
SYNE1-228ENST00000490135 FAM208BQ5VWN6 2430 aa4.95□□□□□ -1.62
SYNE1-228ENST00000490135 PTPRQQ9UMZ3 2332 aa4.94□□□□□ -1.62
SYNE1-228ENST00000490135 IGLV5-37A0A075B6J1 123 aa4.94□□□□□ -1.62
SYNE1-228ENST00000490135 LINC00483Q53H64 154 aa4.94□□□□□ -1.62
SYNE1-228ENST00000490135 MRPL34Q9BQ48 92 aaKnown RBP4.94□□□□□ -1.62
SYNE1-228ENST00000490135 OCR1Q9BZK8 76 aa4.94□□□□□ -1.62
SYNE1-228ENST00000490135 MUC3AQ02505 3323 aa4.93□□□□□ -1.62
SYNE1-228ENST00000490135 MED13LQ71F56 2210 aa4.93□□□□□ -1.62
SYNE1-228ENST00000490135 FREM1Q5H8C1 2179 aa4.93□□□□□ -1.62
SYNE1-228ENST00000490135 ST20-AS1Q8NBB2 130 aa4.93□□□□□ -1.62
SYNE1-228ENST00000490135 CDH23Q9H251 3354 aa4.93□□□□□ -1.62
SYNE1-228ENST00000490135 Q6ZRX8 168 aa4.93□□□□□ -1.62
SYNE1-228ENST00000490135 PRR14LQ5THK1 2151 aa4.93□□□□□ -1.62
SYNE1-228ENST00000490135 MUC4Q99102 2169 aa4.93□□□□□ -1.62
SYNE1-228ENST00000490135 VCANP13611 3396 aa4.93□□□□□ -1.62
SYNE1-228ENST00000490135 RANBP2P49792 3224 aaKnown RBP4.92□□□□□ -1.62
SYNE1-228ENST00000490135 RAI1Q7Z5J4 1906 aaPredicted RBP4.92□□□□□ -1.62
SYNE1-228ENST00000490135 A8MWP4 228 aa4.92□□□□□ -1.62
SYNE1-228ENST00000490135 ARHGAP32A7KAX9 2087 aa4.91□□□□□ -1.62
SYNE1-228ENST00000490135 SPANXA2-OT1Q8N9U9 137 aa4.91□□□□□ -1.62
SYNE1-228ENST00000490135 NBDYA0A0U1RRE5 68 aa4.91□□□□□ -1.62
SYNE1-228ENST00000490135 COL4A2P08572 1712 aa4.91□□□□□ -1.62
SYNE1-228ENST00000490135 A6NN06 94 aa4.9□□□□□ -1.62
SYNE1-228ENST00000490135 K7EQZ3 153 aa4.9□□□□□ -1.62
SYNE1-228ENST00000490135 Q8N9P0 234 aaPredicted RBP4.9□□□□□ -1.63
SYNE1-228ENST00000490135 GPR179Q6PRD1 2367 aa4.9□□□□□ -1.63
SYNE1-228ENST00000490135 COL6A3P12111 3177 aa4.89□□□□□ -1.63
SYNE1-228ENST00000490135 A0A0D9SG42 100 aa4.89□□□□□ -1.63
SYNE1-228ENST00000490135 LINC00304Q8N9R0 145 aa4.89□□□□□ -1.63
SYNE1-228ENST00000490135 KRTAP10-9P60411 292 aa4.89□□□□□ -1.63
SYNE1-228ENST00000490135 PRO3102Q9H379 93 aa4.89□□□□□ -1.63
SYNE1-228ENST00000490135 REV3LO60673 3130 aa4.88□□□□□ -1.63
SYNE1-228ENST00000490135 C9orf92A6NGG3 77 aa4.88□□□□□ -1.63
SYNE1-228ENST00000490135 DSCR10P59022 87 aa4.88□□□□□ -1.63
SYNE1-228ENST00000490135 A0A0A0MQY5 61 aa4.88□□□□□ -1.63
SYNE1-228ENST00000490135 H3BNG1 76 aa4.88□□□□□ -1.63
SYNE1-228ENST00000490135 WWC2-AS2Q96NR7 200 aa4.88□□□□□ -1.63
SYNE1-228ENST00000490135 DOPEY1Q5JWR5 2465 aa4.88□□□□□ -1.63
SYNE1-228ENST00000490135 LTBP2Q14767 1821 aa4.87□□□□□ -1.63
SYNE1-228ENST00000490135 IGLV5-48A0A075B6I7 105 aa4.87□□□□□ -1.63
SYNE1-228ENST00000490135 PLXNB1O43157 2135 aa4.87□□□□□ -1.63
SYNE1-228ENST00000490135 ZNF575Q86XF7 245 aa4.87□□□□□ -1.63
SYNE1-228ENST00000490135 PRUNE2Q8WUY3 3088 aa4.87□□□□□ -1.63
SYNE1-228ENST00000490135 CSAG1Q6PB30 78 aa4.87□□□□□ -1.63
SYNE1-228ENST00000490135 IGHV3OR16-9A0A0B4J2B5 98 aa4.86□□□□□ -1.63
SYNE1-228ENST00000490135 UNC80Q8N2C7 3258 aa4.86□□□□□ -1.63
SYNE1-228ENST00000490135 SONP18583 2426 aaKnown RBP4.86□□□□□ -1.63
SYNE1-228ENST00000490135 XIRP2A4UGR9 3374 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms