RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 RPL18AQ02543 176 aaKnown RBP14.03□□□□□ -0.16
SMC4-221ENST00000489573 GAGE2EQ4V326 116 aa14.03□□□□□ -0.16
SMC4-221ENST00000489573 GAGE2DQ9UEU5 116 aa14.03□□□□□ -0.16
SMC4-221ENST00000489573 LCE6AA0A183 80 aa14.01□□□□□ -0.17
SMC4-221ENST00000489573 NDUFC2O95298 119 aa14.01□□□□□ -0.17
SMC4-221ENST00000489573 LOC107984640A0A0U1RRK4 108 aa14□□□□□ -0.17
SMC4-221ENST00000489573 C9orf118A6NHY6 69 aa14□□□□□ -0.17
SMC4-221ENST00000489573 PGPEP1Q9NXJ5 209 aa14□□□□□ -0.17
SMC4-221ENST00000489573 KMT2AQ03164 3969 aa14□□□□□ -0.17
SMC4-221ENST00000489573 IGKV2-28A0A075B6P5 120 aa14□□□□□ -0.17
SMC4-221ENST00000489573 IGKV2D-28P01615 120 aa14□□□□□ -0.17
SMC4-221ENST00000489573 TRAV13-2A0A0B4J235 113 aa13.97□□□□□ -0.17
SMC4-221ENST00000489573 TSPAN13O95857 204 aa13.97□□□□□ -0.17
SMC4-221ENST00000489573 RPL13AP40429 203 aaKnown RBP13.97□□□□□ -0.17
SMC4-221ENST00000489573 Q8NDZ9 215 aa13.97□□□□□ -0.17
SMC4-221ENST00000489573 NAA38Q9BRA0 125 aaKnown RBP13.97□□□□□ -0.17
SMC4-221ENST00000489573 H3BUT2 72 aa13.96□□□□□ -0.17
SMC4-221ENST00000489573 C9orf129Q5T035 196 aaKnown RBP13.96□□□□□ -0.17
SMC4-221ENST00000489573 LINC00337Q8N6G1 96 aa13.96□□□□□ -0.17
SMC4-221ENST00000489573 GAGE2BQ13066 116 aa13.96□□□□□ -0.18
SMC4-221ENST00000489573 C9orf163Q8N9P6 203 aa13.96□□□□□ -0.18
SMC4-221ENST00000489573 A0A1B0GV90 55 aa13.95□□□□□ -0.18
SMC4-221ENST00000489573 H7C2G1 150 aa13.95□□□□□ -0.18
SMC4-221ENST00000489573 RTL8CO15255 209 aa13.95□□□□□ -0.18
SMC4-221ENST00000489573 Q1RN00 199 aa13.94□□□□□ -0.18
SMC4-221ENST00000489573 PKIGQ9Y2B9 76 aa13.94□□□□□ -0.18
SMC4-221ENST00000489573 NCR3O14931 201 aa13.93□□□□□ -0.18
SMC4-221ENST00000489573 PRR3P79522 188 aaKnown RBP13.93□□□□□ -0.18
SMC4-221ENST00000489573 TNP2Q05952 138 aa13.93□□□□□ -0.18
SMC4-221ENST00000489573 VPREB1P12018 145 aa13.92□□□□□ -0.18
SMC4-221ENST00000489573 HYDINQ4G0P3 5121 aa13.91□□□□□ -0.18
SMC4-221ENST00000489573 TRBV10-2A0A0K0K1G8 114 aa13.9□□□□□ -0.18
SMC4-221ENST00000489573 C16orf90A8MZG2 172 aa13.9□□□□□ -0.18
SMC4-221ENST00000489573 OR13C6PQ8NH95 151 aa13.9□□□□□ -0.18
SMC4-221ENST00000489573 A0A096LNI7 61 aa13.89□□□□□ -0.19
SMC4-221ENST00000489573 A0A1W2PPM0 123 aa13.89□□□□□ -0.19
SMC4-221ENST00000489573 PLA2G2DQ9UNK4 145 aa13.89□□□□□ -0.19
SMC4-221ENST00000489573 DNAH2Q9P225 4427 aa13.89□□□□□ -0.19
SMC4-221ENST00000489573 PSMB2P49721 201 aa13.87□□□□□ -0.19
SMC4-221ENST00000489573 IGKV2-24A0A0C4DH68 120 aa13.86□□□□□ -0.19
SMC4-221ENST00000489573 FABP2P12104 132 aa13.86□□□□□ -0.19
SMC4-221ENST00000489573 LINC01620Q4KN68 170 aa13.86□□□□□ -0.19
SMC4-221ENST00000489573 SERTAD4-AS1Q5TG53 156 aa13.86□□□□□ -0.19
SMC4-221ENST00000489573 SDIM1Q6ZPB5 146 aa13.86□□□□□ -0.19
SMC4-221ENST00000489573 TMEM126AQ9H061 195 aa13.86□□□□□ -0.19
SMC4-221ENST00000489573 S100A7L2Q5SY68 101 aa13.85□□□□□ -0.19
SMC4-221ENST00000489573 IGLV5-52A0A0A0MRZ9 124 aa13.84□□□□□ -0.19
SMC4-221ENST00000489573 M0R378 163 aa13.84□□□□□ -0.19
SMC4-221ENST00000489573 VAMP3Q15836 100 aa13.84□□□□□ -0.19
SMC4-221ENST00000489573 EPPK1P58107 5090 aaKnown RBP13.84□□□□□ -0.19
SMC4-221ENST00000489573 FAM168BA1KXE4 195 aa13.83□□□□□ -0.19
SMC4-221ENST00000489573 TRIAP1O43715 76 aa13.83□□□□□ -0.19
SMC4-221ENST00000489573 LYRM7Q5U5X0 104 aa13.83□□□□□ -0.19
SMC4-221ENST00000489573 NKAPP1Q8N9T2 125 aa13.83□□□□□ -0.19
SMC4-221ENST00000489573 DNAH17Q9UFH2 4485 aa13.83□□□□□ -0.2
SMC4-221ENST00000489573 IGLV5-37A0A075B6J1 123 aa13.83□□□□□ -0.2
SMC4-221ENST00000489573 FUSP35637 526 aaKnown RBP eCLIP13.83□□□□□ -0.2
SMC4-221ENST00000489573 IGLV6-57P01721 117 aa13.82□□□□□ -0.2
SMC4-221ENST00000489573 SMIM11BQ8TCY0 68 aa13.82□□□□□ -0.2
SMC4-221ENST00000489573 RPL28P46779 137 aaKnown RBP13.81□□□□□ -0.2
SMC4-221ENST00000489573 FAM19A5Q7Z5A7 132 aaPredicted RBP13.81□□□□□ -0.2
SMC4-221ENST00000489573 CHTF8P0CG12 524 aa13.8□□□□□ -0.2
SMC4-221ENST00000489573 SCGB1C2P0DMR2 95 aa13.8□□□□□ -0.2
SMC4-221ENST00000489573 LINC00474Q9P2X8 69 aa13.8□□□□□ -0.2
SMC4-221ENST00000489573 SPCS1Q9Y6A9 102 aa13.8□□□□□ -0.2
SMC4-221ENST00000489573 TRBV10-3A0A0K0K1G6 114 aa13.79□□□□□ -0.2
SMC4-221ENST00000489573 COX6CP09669 75 aa13.79□□□□□ -0.2
SMC4-221ENST00000489573 KRTAP7-1Q8IUC3 87 aa13.79□□□□□ -0.2
SMC4-221ENST00000489573 K7EP34 96 aa13.77□□□□□ -0.21
SMC4-221ENST00000489573 C7orf33Q8WU49 177 aa13.77□□□□□ -0.21
SMC4-221ENST00000489573 KRTAP10-2P60368 255 aa13.76□□□□□ -0.21
SMC4-221ENST00000489573 C22orf24Q9Y442 160 aa13.76□□□□□ -0.21
SMC4-221ENST00000489573 A0A1W2PNN7 141 aa13.75□□□□□ -0.21
SMC4-221ENST00000489573 GAGE10A6NGK3 116 aa13.75□□□□□ -0.21
SMC4-221ENST00000489573 LINC00336Q6ZUF6 198 aa13.75□□□□□ -0.21
SMC4-221ENST00000489573 GTF2H5Q6ZYL4 71 aa13.75□□□□□ -0.21
SMC4-221ENST00000489573 TRAV23DV6A0A075B6W5 121 aa13.74□□□□□ -0.21
SMC4-221ENST00000489573 MRPL55Q7Z7F7 128 aaKnown RBP13.74□□□□□ -0.21
SMC4-221ENST00000489573 SPACA4Q8TDM5 124 aa13.74□□□□□ -0.21
SMC4-221ENST00000489573 TRBV20-1A0A075B6N2 111 aa13.73□□□□□ -0.21
SMC4-221ENST00000489573 M0QXV9 152 aa13.73□□□□□ -0.21
SMC4-221ENST00000489573 CBY1Q9Y3M2 126 aa13.73□□□□□ -0.21
SMC4-221ENST00000489573 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.73□□□□□ -0.21
SMC4-221ENST00000489573 PANO1I0J062 215 aa13.72□□□□□ -0.21
SMC4-221ENST00000489573 TCL1BO95988 128 aa13.72□□□□□ -0.21
SMC4-221ENST00000489573 LINC00167Q96N53 147 aa13.71□□□□□ -0.21
SMC4-221ENST00000489573 FRAS1Q86XX4 4008 aa13.71□□□□□ -0.21
SMC4-221ENST00000489573 UBE2V1Q13404 147 aa13.7□□□□□ -0.22
SMC4-221ENST00000489573 C6orf99Q4VX62 202 aa13.7□□□□□ -0.22
SMC4-221ENST00000489573 CLEC2BQ92478 149 aa13.7□□□□□ -0.22
SMC4-221ENST00000489573 DPH3Q96FX2 82 aa13.69□□□□□ -0.22
SMC4-221ENST00000489573 IGLV1-50A0A075B6I6 118 aa13.68□□□□□ -0.22
SMC4-221ENST00000489573 ATXN8Q156A1 80 aa13.68□□□□□ -0.22
SMC4-221ENST00000489573 DIRC1Q969H9 104 aa13.68□□□□□ -0.22
SMC4-221ENST00000489573 RPL37AP8A6NKH3 93 aa13.67□□□□□ -0.22
SMC4-221ENST00000489573 H0YGX0 51 aa13.67□□□□□ -0.22
SMC4-221ENST00000489573 ZNF73O43830 326 aaPredicted RBP13.67□□□□□ -0.22
SMC4-221ENST00000489573 KCNQ1DNQ9H478 68 aa13.67□□□□□ -0.22
SMC4-221ENST00000489573 BIRC6Q9NR09 4857 aa13.66□□□□□ -0.22
SMC4-221ENST00000489573 H3BMG7 143 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms