RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 GTF2H5Q6ZYL4 71 aa10.42□□□□□ -0.74
SYNE1-227ENST00000489156 RYR3Q15413 4870 aa10.42□□□□□ -0.74
SYNE1-227ENST00000489156 TRAV13-2A0A0B4J235 113 aa10.42□□□□□ -0.74
SYNE1-227ENST00000489156 GAGE10A6NGK3 116 aa10.42□□□□□ -0.74
SYNE1-227ENST00000489156 NDUFC2O95298 119 aa10.42□□□□□ -0.74
SYNE1-227ENST00000489156 FRAS1Q86XX4 4008 aa10.42□□□□□ -0.74
SYNE1-227ENST00000489156 RNF151Q2KHN1 245 aa10.41□□□□□ -0.74
SYNE1-227ENST00000489156 SPCS1Q9Y6A9 102 aa10.4□□□□□ -0.74
SYNE1-227ENST00000489156 K7EP34 96 aa10.4□□□□□ -0.75
SYNE1-227ENST00000489156 Q1RN00 199 aa10.4□□□□□ -0.75
SYNE1-227ENST00000489156 IGKV2-28A0A075B6P5 120 aa10.39□□□□□ -0.75
SYNE1-227ENST00000489156 IGKV2D-28P01615 120 aa10.39□□□□□ -0.75
SYNE1-227ENST00000489156 RPL13AP40429 203 aaKnown RBP10.39□□□□□ -0.75
SYNE1-227ENST00000489156 DNAH17Q9UFH2 4485 aa10.39□□□□□ -0.75
SYNE1-227ENST00000489156 NDUFC2-KCTD14E9PQ53 114 aa10.38□□□□□ -0.75
SYNE1-227ENST00000489156 H7C2G1 150 aa10.38□□□□□ -0.75
SYNE1-227ENST00000489156 CARD19Q96LW7 228 aa10.38□□□□□ -0.75
SYNE1-227ENST00000489156 PSMB2P49721 201 aa10.38□□□□□ -0.75
SYNE1-227ENST00000489156 LECT2O14960 151 aa10.37□□□□□ -0.75
SYNE1-227ENST00000489156 LINC00337Q8N6G1 96 aa10.37□□□□□ -0.75
SYNE1-227ENST00000489156 TRBV20-1A0A075B6N2 111 aa10.36□□□□□ -0.75
SYNE1-227ENST00000489156 TLX1NBP0CAT3 122 aa10.36□□□□□ -0.75
SYNE1-227ENST00000489156 TNP2Q05952 138 aa10.36□□□□□ -0.75
SYNE1-227ENST00000489156 C14orf177Q52M58 125 aa10.36□□□□□ -0.75
SYNE1-227ENST00000489156 SLPIP03973 132 aa10.36□□□□□ -0.75
SYNE1-227ENST00000489156 COX6CP09669 75 aa10.36□□□□□ -0.75
SYNE1-227ENST00000489156 WFDC2Q14508 124 aa10.36□□□□□ -0.75
SYNE1-227ENST00000489156 LRCOL1A6NCL2 159 aa10.35□□□□□ -0.75
SYNE1-227ENST00000489156 SCGB1C2P0DMR2 95 aa10.35□□□□□ -0.75
SYNE1-227ENST00000489156 FAT2Q9NYQ8 4349 aa10.34□□□□□ -0.75
SYNE1-227ENST00000489156 TRIAP1O43715 76 aa10.34□□□□□ -0.75
SYNE1-227ENST00000489156 A0A087WTM6 91 aa10.33□□□□□ -0.76
SYNE1-227ENST00000489156 Q6ZRP5 223 aa10.32□□□□□ -0.76
SYNE1-227ENST00000489156 TRBV10-2A0A0K0K1G8 114 aa10.32□□□□□ -0.76
SYNE1-227ENST00000489156 RPL28P46779 137 aaKnown RBP10.32□□□□□ -0.76
SYNE1-227ENST00000489156 CNBPP62633 177 aaKnown RBP10.32□□□□□ -0.76
SYNE1-227ENST00000489156 XAGE1AQ9HD64 81 aa10.32□□□□□ -0.76
SYNE1-227ENST00000489156 LINC00336Q6ZUF6 198 aa10.31□□□□□ -0.76
SYNE1-227ENST00000489156 TMEM126AQ9H061 195 aa10.31□□□□□ -0.76
SYNE1-227ENST00000489156 OR13C6PQ8NH95 151 aa10.3□□□□□ -0.76
SYNE1-227ENST00000489156 H3BMG7 143 aa10.3□□□□□ -0.76
SYNE1-227ENST00000489156 TCL1BO95988 128 aa10.3□□□□□ -0.76
SYNE1-227ENST00000489156 PRR3P79522 188 aaKnown RBP10.29□□□□□ -0.76
SYNE1-227ENST00000489156 GAGE2EQ4V326 116 aa10.29□□□□□ -0.76
SYNE1-227ENST00000489156 Q8NDZ9 215 aa10.29□□□□□ -0.76
SYNE1-227ENST00000489156 GAGE2DQ9UEU5 116 aa10.29□□□□□ -0.76
SYNE1-227ENST00000489156 Q8N814 137 aa10.27□□□□□ -0.76
SYNE1-227ENST00000489156 SMIM11BQ8TCY0 68 aa10.27□□□□□ -0.76
SYNE1-227ENST00000489156 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.27□□□□□ -0.77
SYNE1-227ENST00000489156 LOC107984640A0A0U1RRK4 108 aa10.27□□□□□ -0.77
SYNE1-227ENST00000489156 RPL18AQ02543 176 aaKnown RBP10.27□□□□□ -0.77
SYNE1-227ENST00000489156 ATXN8Q156A1 80 aa10.27□□□□□ -0.77
SYNE1-227ENST00000489156 F8W1H4 67 aa10.26□□□□□ -0.77
SYNE1-227ENST00000489156 VPREB1P12018 145 aa10.26□□□□□ -0.77
SYNE1-227ENST00000489156 S100A7L2Q5SY68 101 aa10.26□□□□□ -0.77
SYNE1-227ENST00000489156 PKD1P98161 4303 aa10.26□□□□□ -0.77
SYNE1-227ENST00000489156 NCR3O14931 201 aa10.25□□□□□ -0.77
SYNE1-227ENST00000489156 FUSP35637 526 aaKnown RBP eCLIP10.25□□□□□ -0.77
SYNE1-227ENST00000489156 C9orf129Q5T035 196 aaKnown RBP10.25□□□□□ -0.77
SYNE1-227ENST00000489156 PLA2G2DQ9UNK4 145 aa10.25□□□□□ -0.77
SYNE1-227ENST00000489156 DNAH11Q96DT5 4516 aa10.25□□□□□ -0.77
SYNE1-227ENST00000489156 IGLV6-57P01721 117 aa10.24□□□□□ -0.77
SYNE1-227ENST00000489156 H0YGX0 51 aa10.23□□□□□ -0.77
SYNE1-227ENST00000489156 M0R378 163 aa10.23□□□□□ -0.77
SYNE1-227ENST00000489156 LST1O00453 97 aa10.23□□□□□ -0.77
SYNE1-227ENST00000489156 KRTAP10-2P60368 255 aa10.23□□□□□ -0.77
SYNE1-227ENST00000489156 PKIGQ9Y2B9 76 aa10.23□□□□□ -0.77
SYNE1-227ENST00000489156 A0A1B0GVY2 172 aa10.21□□□□□ -0.77
SYNE1-227ENST00000489156 CLEC2BQ92478 149 aa10.21□□□□□ -0.77
SYNE1-227ENST00000489156 CBY1Q9Y3M2 126 aa10.21□□□□□ -0.77
SYNE1-227ENST00000489156 GAGE2BQ13066 116 aa10.21□□□□□ -0.78
SYNE1-227ENST00000489156 PRO0461Q9UI25 63 aa10.21□□□□□ -0.78
SYNE1-227ENST00000489156 HECTD4Q9Y4D8 3996 aa10.21□□□□□ -0.78
SYNE1-227ENST00000489156 C16orf90A8MZG2 172 aa10.2□□□□□ -0.78
SYNE1-227ENST00000489156 C9orf163Q8N9P6 203 aa10.2□□□□□ -0.78
SYNE1-227ENST00000489156 LINC01620Q4KN68 170 aa10.19□□□□□ -0.78
SYNE1-227ENST00000489156 IGLV5-37A0A075B6J1 123 aa10.19□□□□□ -0.78
SYNE1-227ENST00000489156 TRBV10-3A0A0K0K1G6 114 aa10.18□□□□□ -0.78
SYNE1-227ENST00000489156 TRACP01848 142 aa10.18□□□□□ -0.78
SYNE1-227ENST00000489156 NKAPP1Q8N9T2 125 aa10.18□□□□□ -0.78
SYNE1-227ENST00000489156 IGLV5-52A0A0A0MRZ9 124 aa10.17□□□□□ -0.78
SYNE1-227ENST00000489156 C9JAW5 83 aa10.17□□□□□ -0.78
SYNE1-227ENST00000489156 PKHD1P08F94 4074 aa10.16□□□□□ -0.78
SYNE1-227ENST00000489156 M0QXV9 152 aa10.16□□□□□ -0.78
SYNE1-227ENST00000489156 SERTAD4-AS1Q5TG53 156 aa10.16□□□□□ -0.78
SYNE1-227ENST00000489156 DNAH5Q8TE73 4624 aa10.15□□□□□ -0.78
SYNE1-227ENST00000489156 TRAV23DV6A0A075B6W5 121 aa10.15□□□□□ -0.78
SYNE1-227ENST00000489156 C6orf99Q4VX62 202 aa10.15□□□□□ -0.78
SYNE1-227ENST00000489156 LINC01600Q96MT4 127 aa10.15□□□□□ -0.78
SYNE1-227ENST00000489156 FAM218AQ96MZ4 157 aa10.15□□□□□ -0.78
SYNE1-227ENST00000489156 A0A096LNI7 61 aa10.15□□□□□ -0.79
SYNE1-227ENST00000489156 SLC25A20O43772 301 aa10.15□□□□□ -0.79
SYNE1-227ENST00000489156 A0A1B0GX51 115 aa10.14□□□□□ -0.79
SYNE1-227ENST00000489156 MTURNQ8N3F0 131 aa10.14□□□□□ -0.79
SYNE1-227ENST00000489156 LINC00474Q9P2X8 69 aa10.14□□□□□ -0.79
SYNE1-227ENST00000489156 TRBV7-6A0A0J9YX20 115 aa10.13□□□□□ -0.79
SYNE1-227ENST00000489156 SMCPP49901 116 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-227ENST00000489156 FAM168BA1KXE4 195 aa10.13□□□□□ -0.79
SYNE1-227ENST00000489156 ZNF73O43830 326 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-227ENST00000489156 SDIM1Q6ZPB5 146 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms