RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 SND1-IT1Q9HBX3 110 aa6.9□□□□□ -1.3
USP11-209ENST00000488848 LOC107984640A0A0U1RRK4 108 aa6.89□□□□□ -1.31
USP11-209ENST00000488848 EPM2AB3EWF7 344 aa6.89□□□□□ -1.31
USP11-209ENST00000488848 EREGO14944 169 aa6.89□□□□□ -1.31
USP11-209ENST00000488848 EIF4EBP3O60516 100 aaPredicted RBP6.89□□□□□ -1.31
USP11-209ENST00000488848 PFN2P35080 140 aa6.89□□□□□ -1.31
USP11-209ENST00000488848 FXYD2P54710 66 aa6.89□□□□□ -1.31
USP11-209ENST00000488848 TNP2Q05952 138 aa6.89□□□□□ -1.31
USP11-209ENST00000488848 Q6ZRP5 223 aa6.89□□□□□ -1.31
USP11-209ENST00000488848 MUSTN1Q8IVN3 82 aa6.89□□□□□ -1.31
USP11-209ENST00000488848 LRP1BQ9NZR2 4599 aa6.89□□□□□ -1.31
USP11-209ENST00000488848 IGLV5-37A0A075B6J1 123 aa6.88□□□□□ -1.31
USP11-209ENST00000488848 A0A0B4J2C4 111 aa6.88□□□□□ -1.31
USP11-209ENST00000488848 C16orf90A8MZG2 172 aa6.88□□□□□ -1.31
USP11-209ENST00000488848 LBHQ53QV2 105 aaPredicted RBP6.88□□□□□ -1.31
USP11-209ENST00000488848 DAND5Q8N907 189 aa6.88□□□□□ -1.31
USP11-209ENST00000488848 SNHG12Q9BXW3 62 aa6.88□□□□□ -1.31
USP11-209ENST00000488848 TRBV10-2A0A0K0K1G8 114 aa6.87□□□□□ -1.31
USP11-209ENST00000488848 PCP4L1A6NKN8 68 aa6.87□□□□□ -1.31
USP11-209ENST00000488848 SDIM1Q6ZPB5 146 aa6.87□□□□□ -1.31
USP11-209ENST00000488848 A4D1N5 150 aa6.86□□□□□ -1.31
USP11-209ENST00000488848 A6NDN8 102 aa6.86□□□□□ -1.31
USP11-209ENST00000488848 LINC00474Q9P2X8 69 aa6.86□□□□□ -1.31
USP11-209ENST00000488848 A0A0U1RRA0 63 aa6.85□□□□□ -1.31
USP11-209ENST00000488848 HINT1P49773 126 aaPredicted RBP6.85□□□□□ -1.31
USP11-209ENST00000488848 C9orf129Q5T035 196 aaKnown RBP6.85□□□□□ -1.31
USP11-209ENST00000488848 PGPEP1Q9NXJ5 209 aa6.85□□□□□ -1.31
USP11-209ENST00000488848 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.84□□□□□ -1.31
USP11-209ENST00000488848 IGKV2-28A0A075B6P5 120 aa6.84□□□□□ -1.31
USP11-209ENST00000488848 IGKV2D-28P01615 120 aa6.84□□□□□ -1.31
USP11-209ENST00000488848 CFC1BP0CG36 223 aa6.84□□□□□ -1.31
USP11-209ENST00000488848 CFC1P0CG37 223 aa6.84□□□□□ -1.31
USP11-209ENST00000488848 VPREB1P12018 145 aa6.84□□□□□ -1.31
USP11-209ENST00000488848 A0A1B0GVY2 172 aa6.83□□□□□ -1.32
USP11-209ENST00000488848 Q8NDZ9 215 aa6.83□□□□□ -1.32
USP11-209ENST00000488848 A0A096LNI7 61 aa6.82□□□□□ -1.32
USP11-209ENST00000488848 TRAV13-2A0A0B4J235 113 aa6.82□□□□□ -1.32
USP11-209ENST00000488848 RPL18AQ02543 176 aaKnown RBP6.82□□□□□ -1.32
USP11-209ENST00000488848 COL5A1-AS1Q5SY13 56 aa6.82□□□□□ -1.32
USP11-209ENST00000488848 Q6ZSA8 131 aa6.82□□□□□ -1.32
USP11-209ENST00000488848 SPACA4Q8TDM5 124 aa6.82□□□□□ -1.32
USP11-209ENST00000488848 IGLV5-52A0A0A0MRZ9 124 aa6.81□□□□□ -1.32
USP11-209ENST00000488848 IGLV6-57P01721 117 aa6.81□□□□□ -1.32
USP11-209ENST00000488848 KRTAP10-2P60368 255 aa6.81□□□□□ -1.32
USP11-209ENST00000488848 LINC00337Q8N6G1 96 aa6.81□□□□□ -1.32
USP11-209ENST00000488848 XAGE1AQ9HD64 81 aa6.81□□□□□ -1.32
USP11-209ENST00000488848 NHP2Q9NX24 153 aaKnown RBP6.81□□□□□ -1.32
USP11-209ENST00000488848 PRO1854Q9UHT4 67 aa6.81□□□□□ -1.32
USP11-209ENST00000488848 APOBP04114 4563 aaKnown RBP6.8□□□□□ -1.32
USP11-209ENST00000488848 GAGE2EQ4V326 116 aa6.8□□□□□ -1.32
USP11-209ENST00000488848 KRTAP7-1Q8IUC3 87 aa6.8□□□□□ -1.32
USP11-209ENST00000488848 GAGE2DQ9UEU5 116 aa6.8□□□□□ -1.32
USP11-209ENST00000488848 M0R378 163 aa6.79□□□□□ -1.32
USP11-209ENST00000488848 NPC2P61916 151 aa6.79□□□□□ -1.32
USP11-209ENST00000488848 TAX1BP3O14907 124 aa6.78□□□□□ -1.32
USP11-209ENST00000488848 GAGE2BQ13066 116 aa6.78□□□□□ -1.32
USP11-209ENST00000488848 SERTAD4-AS1Q5TG53 156 aa6.78□□□□□ -1.32
USP11-209ENST00000488848 TMEM126AQ9H061 195 aa6.78□□□□□ -1.32
USP11-209ENST00000488848 CBY1Q9Y3M2 126 aa6.78□□□□□ -1.32
USP11-209ENST00000488848 K7ERJ3 54 aa6.77□□□□□ -1.33
USP11-209ENST00000488848 RAB37Q96AX2 223 aa6.77□□□□□ -1.33
USP11-209ENST00000488848 PLAC8Q9NZF1 115 aa6.77□□□□□ -1.33
USP11-209ENST00000488848 RPL28P46779 137 aaKnown RBP6.76□□□□□ -1.33
USP11-209ENST00000488848 BATFQ16520 125 aa6.76□□□□□ -1.33
USP11-209ENST00000488848 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.76□□□□□ -1.33
USP11-209ENST00000488848 HERC2O95714 4834 aa6.76□□□□□ -1.33
USP11-209ENST00000488848 A0A1W2PNN7 141 aa6.75□□□□□ -1.33
USP11-209ENST00000488848 C9orf118A6NHY6 69 aa6.75□□□□□ -1.33
USP11-209ENST00000488848 PANO1I0J062 215 aa6.75□□□□□ -1.33
USP11-209ENST00000488848 TSPAN13O95857 204 aa6.75□□□□□ -1.33
USP11-209ENST00000488848 RPL13AP40429 203 aaKnown RBP6.75□□□□□ -1.33
USP11-209ENST00000488848 MRPL55Q7Z7F7 128 aaKnown RBP6.75□□□□□ -1.33
USP11-209ENST00000488848 KCNQ1DNQ9H478 68 aa6.75□□□□□ -1.33
USP11-209ENST00000488848 UBR4Q5T4S7 5183 aa6.75□□□□□ -1.33
USP11-209ENST00000488848 IGKV2-24A0A0C4DH68 120 aa6.74□□□□□ -1.33
USP11-209ENST00000488848 TRBV7-6A0A0J9YX20 115 aa6.74□□□□□ -1.33
USP11-209ENST00000488848 FAM168BA1KXE4 195 aa6.74□□□□□ -1.33
USP11-209ENST00000488848 CHTF8P0CG12 524 aa6.74□□□□□ -1.33
USP11-209ENST00000488848 SPRR1AP35321 89 aa6.74□□□□□ -1.33
USP11-209ENST00000488848 NKAPP1Q8N9T2 125 aa6.74□□□□□ -1.33
USP11-209ENST00000488848 C7orf33Q8WU49 177 aa6.74□□□□□ -1.33
USP11-209ENST00000488848 C22orf24Q9Y442 160 aa6.74□□□□□ -1.33
USP11-209ENST00000488848 IGLV1-50A0A075B6I6 118 aa6.73□□□□□ -1.33
USP11-209ENST00000488848 TRBV10-3A0A0K0K1G6 114 aa6.73□□□□□ -1.33
USP11-209ENST00000488848 PRR3P79522 188 aaKnown RBP6.73□□□□□ -1.33
USP11-209ENST00000488848 LINC01620Q4KN68 170 aa6.73□□□□□ -1.33
USP11-209ENST00000488848 KRTAP4-16G5E9R7 235 aaPredicted RBP6.72□□□□□ -1.33
USP11-209ENST00000488848 M0QXV9 152 aa6.72□□□□□ -1.33
USP11-209ENST00000488848 PRYO14603 147 aa6.72□□□□□ -1.33
USP11-209ENST00000488848 NCR3O14931 201 aa6.72□□□□□ -1.33
USP11-209ENST00000488848 KRTAP10-1P60331 282 aa6.72□□□□□ -1.33
USP11-209ENST00000488848 A0A087WYN8 130 aa6.71□□□□□ -1.34
USP11-209ENST00000488848 S100A7L2Q5SY68 101 aa6.71□□□□□ -1.34
USP11-209ENST00000488848 LYRM7Q5U5X0 104 aa6.71□□□□□ -1.34
USP11-209ENST00000488848 FAM19A5Q7Z5A7 132 aaPredicted RBP6.71□□□□□ -1.34
USP11-209ENST00000488848 SMIM11BQ8TCY0 68 aa6.71□□□□□ -1.34
USP11-209ENST00000488848 LINC00167Q96N53 147 aa6.71□□□□□ -1.34
USP11-209ENST00000488848 VPS13BQ7Z7G8 4022 aa6.71□□□□□ -1.34
USP11-209ENST00000488848 TRAV23DV6A0A075B6W5 121 aa6.7□□□□□ -1.34
USP11-209ENST00000488848 A0A1W2PPM0 123 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms