RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 LYPD5Q6UWN5 251 aa7.7□□□□□ -1.18
HDAC6-228ENST00000486227 MUC7Q8TAX7 377 aa7.7□□□□□ -1.18
HDAC6-228ENST00000486227 ZNF706Q9Y5V0 76 aaPredicted RBP7.7□□□□□ -1.18
HDAC6-228ENST00000486227 IGLV5-45A0A087WSX0 123 aa7.7□□□□□ -1.18
HDAC6-228ENST00000486227 H0Y9J4 135 aa7.7□□□□□ -1.18
HDAC6-228ENST00000486227 LITAFQ99732 161 aa7.7□□□□□ -1.18
HDAC6-228ENST00000486227 TRBV10-3A0A0K0K1G6 114 aa7.69□□□□□ -1.18
HDAC6-228ENST00000486227 EGFEM1PQ0D2K5 195 aa7.69□□□□□ -1.18
HDAC6-228ENST00000486227 C1orf195Q5TG92 126 aa7.69□□□□□ -1.18
HDAC6-228ENST00000486227 C6orf223Q8N319 242 aa7.68□□□□□ -1.18
HDAC6-228ENST00000486227 X6R8D5 127 aa7.68□□□□□ -1.18
HDAC6-228ENST00000486227 FRYQ5TBA9 3013 aa7.68□□□□□ -1.18
HDAC6-228ENST00000486227 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.67□□□□□ -1.18
HDAC6-228ENST00000486227 RPL37AP8A6NKH3 93 aa7.67□□□□□ -1.18
HDAC6-228ENST00000486227 ZNF73O43830 326 aaPredicted RBP7.66□□□□□ -1.18
HDAC6-228ENST00000486227 SOSTDC1Q6X4U4 206 aa7.66□□□□□ -1.18
HDAC6-228ENST00000486227 FAM218AQ96MZ4 157 aa7.66□□□□□ -1.18
HDAC6-228ENST00000486227 PLAC8L1A1L4L8 177 aa7.66□□□□□ -1.18
HDAC6-228ENST00000486227 DHRS4-AS1Q9P1J3 65 aa7.66□□□□□ -1.18
HDAC6-228ENST00000486227 IGHV3OR16-9A0A0B4J2B5 98 aa7.66□□□□□ -1.18
HDAC6-228ENST00000486227 Q8N3U1 123 aa7.65□□□□□ -1.18
HDAC6-228ENST00000486227 PRO0628Q9UI54 55 aa7.65□□□□□ -1.19
HDAC6-228ENST00000486227 MDFIQ99750 246 aa7.64□□□□□ -1.19
HDAC6-228ENST00000486227 BCE1O60756 84 aa7.64□□□□□ -1.19
HDAC6-228ENST00000486227 SMCR5Q8TEV8 140 aa7.64□□□□□ -1.19
HDAC6-228ENST00000486227 IGSF10Q6WRI0 2623 aa7.63□□□□□ -1.19
HDAC6-228ENST00000486227 KRTAP1-3Q8IUG1 177 aa7.63□□□□□ -1.19
HDAC6-228ENST00000486227 Q6ZVQ6 151 aa7.62□□□□□ -1.19
HDAC6-228ENST00000486227 C3orf84H3BNL1 204 aa7.62□□□□□ -1.19
HDAC6-228ENST00000486227 C4orf26Q17RF5 130 aa7.61□□□□□ -1.19
HDAC6-228ENST00000486227 TEP1Q99973 2627 aaKnown RBP7.61□□□□□ -1.19
HDAC6-228ENST00000486227 LINC01547P58512 204 aaPredicted RBP7.61□□□□□ -1.19
HDAC6-228ENST00000486227 BOD1L1Q8NFC6 3051 aa7.61□□□□□ -1.19
HDAC6-228ENST00000486227 EYSQ5T1H1 3165 aa7.61□□□□□ -1.19
HDAC6-228ENST00000486227 F8WDY8 70 aa7.61□□□□□ -1.19
HDAC6-228ENST00000486227 FRYLO94915 3013 aa7.6□□□□□ -1.19
HDAC6-228ENST00000486227 A8MTW9 85 aa7.6□□□□□ -1.19
HDAC6-228ENST00000486227 PRYO14603 147 aa7.6□□□□□ -1.19
HDAC6-228ENST00000486227 LINC00575Q6W349 94 aa7.6□□□□□ -1.19
HDAC6-228ENST00000486227 ESRGQ1W209 222 aa7.6□□□□□ -1.19
HDAC6-228ENST00000486227 C2orf48Q96LS8 159 aa7.6□□□□□ -1.19
HDAC6-228ENST00000486227 WWC2-AS2Q96NR7 200 aa7.6□□□□□ -1.19
HDAC6-228ENST00000486227 MRPL55Q7Z7F7 128 aaKnown RBP7.59□□□□□ -1.19
HDAC6-228ENST00000486227 TMEM254Q8TBM7 123 aa7.59□□□□□ -1.19
HDAC6-228ENST00000486227 CXCL6P80162 114 aa7.59□□□□□ -1.19
HDAC6-228ENST00000486227 TRBV7-6A0A0J9YX20 115 aa7.59□□□□□ -1.19
HDAC6-228ENST00000486227 Q6ZRU5 148 aa7.59□□□□□ -1.19
HDAC6-228ENST00000486227 LINC01561Q8N1V8 128 aa7.59□□□□□ -1.19
HDAC6-228ENST00000486227 Q8NAQ8 132 aa7.59□□□□□ -1.19
HDAC6-228ENST00000486227 LINC01600Q96MT4 127 aa7.59□□□□□ -1.2
HDAC6-228ENST00000486227 NBEAQ8NFP9 2946 aa7.58□□□□□ -1.2
HDAC6-228ENST00000486227 LINC01556Q5JQF7 62 aa7.58□□□□□ -1.2
HDAC6-228ENST00000486227 SPINK6Q6UWN8 80 aa7.58□□□□□ -1.2
HDAC6-228ENST00000486227 H3BNG1 76 aa7.58□□□□□ -1.2
HDAC6-228ENST00000486227 FREM2Q5SZK8 3169 aa7.58□□□□□ -1.2
HDAC6-228ENST00000486227 IGLV9-49A0A0B4J1Y8 123 aa7.57□□□□□ -1.2
HDAC6-228ENST00000486227 REV3LO60673 3130 aa7.57□□□□□ -1.2
HDAC6-228ENST00000486227 SPTSSBQ8NFR3 76 aa7.57□□□□□ -1.2
HDAC6-228ENST00000486227 SPATA3Q8NHX4 192 aa7.57□□□□□ -1.2
HDAC6-228ENST00000486227 SPEGQ15772 3267 aa7.57□□□□□ -1.2
HDAC6-228ENST00000486227 CSNK1G2-AS1Q8NCQ2 148 aa7.57□□□□□ -1.2
HDAC6-228ENST00000486227 CHD6Q8TD26 2715 aa7.56□□□□□ -1.2
HDAC6-228ENST00000486227 EIF4EBP3O60516 100 aaPredicted RBP7.56□□□□□ -1.2
HDAC6-228ENST00000486227 SETXQ7Z333 2677 aaKnown RBP7.56□□□□□ -1.2
HDAC6-228ENST00000486227 TNRC18O15417 2968 aaPredicted RBP7.56□□□□□ -1.2
HDAC6-228ENST00000486227 KRTAP10-3P60369 221 aa7.56□□□□□ -1.2
HDAC6-228ENST00000486227 KRTAP1-1Q07627 177 aa7.56□□□□□ -1.2
HDAC6-228ENST00000486227 ATMQ13315 3056 aa7.56□□□□□ -1.2
HDAC6-228ENST00000486227 ZNF575Q86XF7 245 aa7.56□□□□□ -1.2
HDAC6-228ENST00000486227 DMXL2Q8TDJ6 3036 aa7.55□□□□□ -1.2
HDAC6-228ENST00000486227 CHKB-CPT1BH3BT56 60 aa7.55□□□□□ -1.2
HDAC6-228ENST00000486227 GIG44P09565 113 aaPredicted RBP7.55□□□□□ -1.2
HDAC6-228ENST00000486227 C19orf73Q9NVV2 129 aa7.55□□□□□ -1.2
HDAC6-228ENST00000486227 FLNCQ14315 2725 aa7.55□□□□□ -1.2
HDAC6-228ENST00000486227 REG3GQ6UW15 175 aa7.54□□□□□ -1.2
HDAC6-228ENST00000486227 FAM30AQ9NZY2 134 aa7.54□□□□□ -1.2
HDAC6-228ENST00000486227 C1orf137Q5JT78 98 aa7.54□□□□□ -1.2
HDAC6-228ENST00000486227 IGKV4-1P06312 121 aa7.54□□□□□ -1.2
HDAC6-228ENST00000486227 ADGRG4Q8IZF6 3080 aa7.54□□□□□ -1.2
HDAC6-228ENST00000486227 C10orf25Q5T742 122 aa7.53□□□□□ -1.2
HDAC6-228ENST00000486227 PRR4Q16378 134 aa7.53□□□□□ -1.2
HDAC6-228ENST00000486227 SPTBN5Q9NRC6 3674 aaKnown RBP7.52□□□□□ -1.21
HDAC6-228ENST00000486227 UNC79Q9P2D8 2635 aa7.52□□□□□ -1.21
HDAC6-228ENST00000486227 TEX15Q9BXT5 2789 aa7.51□□□□□ -1.21
HDAC6-228ENST00000486227 K7EIL1 84 aa7.5□□□□□ -1.21
HDAC6-228ENST00000486227 Q6ZQT0 140 aa7.5□□□□□ -1.21
HDAC6-228ENST00000486227 C6orf48Q9UBA6 75 aa7.5□□□□□ -1.21
HDAC6-228ENST00000486227 LOC110117498A0A087WWA1 95 aa7.5□□□□□ -1.21
HDAC6-228ENST00000486227 NBDYA0A0U1RRE5 68 aa7.5□□□□□ -1.21
HDAC6-228ENST00000486227 WFDC13Q8IUB5 93 aa7.49□□□□□ -1.21
HDAC6-228ENST00000486227 CIRBP-AS1Q8TBR5 109 aa7.49□□□□□ -1.21
HDAC6-228ENST00000486227 COL12A1Q99715 3063 aa7.48□□□□□ -1.21
HDAC6-228ENST00000486227 A6NED7 52 aa7.47□□□□□ -1.21
HDAC6-228ENST00000486227 LINC00588Q9Y4M8 146 aa7.47□□□□□ -1.21
HDAC6-228ENST00000486227 KRTAP10-11P60412 298 aa7.46□□□□□ -1.21
HDAC6-228ENST00000486227 PMAIP1Q13794 54 aa7.46□□□□□ -1.22
HDAC6-228ENST00000486227 STAB1Q9NY15 2570 aa7.45□□□□□ -1.22
HDAC6-228ENST00000486227 C22orf24Q9Y442 160 aa7.45□□□□□ -1.22
HDAC6-228ENST00000486227 CASC2Q6XLA1 102 aa7.45□□□□□ -1.22
HDAC6-228ENST00000486227 Q8N9L7 120 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 271.7 ms