RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 EPM2AB3EWF7 344 aa12.82□□□□□ -0.36
CCDC88B-207ENST00000479965 IGHV4-31P0DP07 118 aa12.82□□□□□ -0.36
CCDC88B-207ENST00000479965 CR1P17927 2039 aa12.82□□□□□ -0.36
CCDC88B-207ENST00000479965 COX17Q14061 63 aa12.82□□□□□ -0.36
CCDC88B-207ENST00000479965 LINC01006Q8NI28 216 aa12.82□□□□□ -0.36
CCDC88B-207ENST00000479965 C10orf25Q5T742 122 aa12.81□□□□□ -0.36
CCDC88B-207ENST00000479965 UNQ6190/PRO20217Q6UXQ8 127 aa12.81□□□□□ -0.36
CCDC88B-207ENST00000479965 BRK1Q8WUW1 75 aa12.81□□□□□ -0.36
CCDC88B-207ENST00000479965 MUC7Q8TAX7 377 aa12.8□□□□□ -0.36
CCDC88B-207ENST00000479965 BBC3Q96PG8 261 aaPredicted RBP12.8□□□□□ -0.36
CCDC88B-207ENST00000479965 CD164L2Q6UWJ8 174 aa12.8□□□□□ -0.36
CCDC88B-207ENST00000479965 Q8N9L7 120 aa12.79□□□□□ -0.36
CCDC88B-207ENST00000479965 MPLKIPQ8TAP9 179 aa12.79□□□□□ -0.36
CCDC88B-207ENST00000479965 A0A1B0GUV1 79 aa12.79□□□□□ -0.36
CCDC88B-207ENST00000479965 BCE1O60756 84 aa12.79□□□□□ -0.36
CCDC88B-207ENST00000479965 FSHBP01225 129 aa12.79□□□□□ -0.36
CCDC88B-207ENST00000479965 MIFP14174 115 aa12.79□□□□□ -0.36
CCDC88B-207ENST00000479965 A0A0U1RQV1 116 aa12.79□□□□□ -0.36
CCDC88B-207ENST00000479965 CSNK1G2-AS1Q8NCQ2 148 aa12.79□□□□□ -0.36
CCDC88B-207ENST00000479965 C16orf95Q9H693 158 aa12.79□□□□□ -0.36
CCDC88B-207ENST00000479965 CXCL6P80162 114 aa12.78□□□□□ -0.36
CCDC88B-207ENST00000479965 REG3AQ06141 175 aa12.77□□□□□ -0.37
CCDC88B-207ENST00000479965 NREPQ16612 68 aa12.77□□□□□ -0.37
CCDC88B-207ENST00000479965 XAGE1AQ9HD64 81 aa12.77□□□□□ -0.37
CCDC88B-207ENST00000479965 SPAG11BQ08648 103 aa12.75□□□□□ -0.37
CCDC88B-207ENST00000479965 BPY2O14599 106 aa12.74□□□□□ -0.37
CCDC88B-207ENST00000479965 TMEM254Q8TBM7 123 aa12.74□□□□□ -0.37
CCDC88B-207ENST00000479965 PDE6GP18545 87 aa12.73□□□□□ -0.37
CCDC88B-207ENST00000479965 TRBV7-4A0A0J9YYF1 115 aa12.73□□□□□ -0.37
CCDC88B-207ENST00000479965 DEFB4AO15263 64 aa12.73□□□□□ -0.37
CCDC88B-207ENST00000479965 MTORP42345 2549 aa12.72□□□□□ -0.37
CCDC88B-207ENST00000479965 IGHV4-28A0A0C4DH34 117 aa12.72□□□□□ -0.37
CCDC88B-207ENST00000479965 DAD1P61803 113 aa12.72□□□□□ -0.37
CCDC88B-207ENST00000479965 PRO0255Q9UI72 69 aa12.72□□□□□ -0.37
CCDC88B-207ENST00000479965 CYSRT1A8MQ03 144 aa12.72□□□□□ -0.37
CCDC88B-207ENST00000479965 NDUFC1O43677 76 aa12.72□□□□□ -0.37
CCDC88B-207ENST00000479965 DIRC1Q969H9 104 aa12.71□□□□□ -0.37
CCDC88B-207ENST00000479965 C19orf73Q9NVV2 129 aa12.71□□□□□ -0.37
CCDC88B-207ENST00000479965 FAM229BQ4G0N7 80 aa12.7□□□□□ -0.38
CCDC88B-207ENST00000479965 IGLV6-57P01721 117 aa12.7□□□□□ -0.38
CCDC88B-207ENST00000479965 CMC4P56277 68 aaPredicted RBP12.7□□□□□ -0.38
CCDC88B-207ENST00000479965 C9orf66Q5T8R8 295 aa12.7□□□□□ -0.38
CCDC88B-207ENST00000479965 ZNF469Q96JG9 3925 aaPredicted RBP12.68□□□□□ -0.38
CCDC88B-207ENST00000479965 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.68□□□□□ -0.38
CCDC88B-207ENST00000479965 DNAJC9-AS1A6NH13 148 aa12.67□□□□□ -0.38
CCDC88B-207ENST00000479965 PIEZO1Q92508 2521 aa12.67□□□□□ -0.38
CCDC88B-207ENST00000479965 ZNF73O43830 326 aaPredicted RBP12.66□□□□□ -0.38
CCDC88B-207ENST00000479965 COX7BP24311 80 aa12.66□□□□□ -0.38
CCDC88B-207ENST00000479965 IGLV1-51P01701 117 aa12.65□□□□□ -0.38
CCDC88B-207ENST00000479965 KRTAP10-9P60411 292 aa12.65□□□□□ -0.38
CCDC88B-207ENST00000479965 C3orf84H3BNL1 204 aa12.63□□□□□ -0.39
CCDC88B-207ENST00000479965 IGSF10Q6WRI0 2623 aa12.63□□□□□ -0.39
CCDC88B-207ENST00000479965 HTN3P15516 51 aa12.63□□□□□ -0.39
CCDC88B-207ENST00000479965 ATP5EP56381 51 aaPredicted RBP12.63□□□□□ -0.39
CCDC88B-207ENST00000479965 KLK12Q9UKR0 248 aa12.63□□□□□ -0.39
CCDC88B-207ENST00000479965 PRYO14603 147 aa12.61□□□□□ -0.39
CCDC88B-207ENST00000479965 ACANP16112 2415 aa12.61□□□□□ -0.39
CCDC88B-207ENST00000479965 FUSP35637 526 aaKnown RBP eCLIP12.61□□□□□ -0.39
CCDC88B-207ENST00000479965 HIGD2AQ9BW72 106 aa12.61□□□□□ -0.39
CCDC88B-207ENST00000479965 LRCOL1A6NCL2 159 aa12.59□□□□□ -0.39
CCDC88B-207ENST00000479965 ZNF462Q96JM2 2506 aa12.59□□□□□ -0.39
CCDC88B-207ENST00000479965 H3BQ85 93 aa12.59□□□□□ -0.39
CCDC88B-207ENST00000479965 C6orf48Q9UBA6 75 aa12.58□□□□□ -0.4
CCDC88B-207ENST00000479965 CELA1Q9UNI1 258 aa12.58□□□□□ -0.4
CCDC88B-207ENST00000479965 A0A0J9YWU9 116 aa12.57□□□□□ -0.4
CCDC88B-207ENST00000479965 IGHV4-30-4P0DP06 118 aa12.57□□□□□ -0.4
CCDC88B-207ENST00000479965 C1orf195Q5TG92 126 aa12.57□□□□□ -0.4
CCDC88B-207ENST00000479965 IGKV4-1P06312 121 aa12.57□□□□□ -0.4
CCDC88B-207ENST00000479965 DEFB105AQ8NG35 78 aa12.57□□□□□ -0.4
CCDC88B-207ENST00000479965 ITPR3Q14573 2671 aa12.57□□□□□ -0.4
CCDC88B-207ENST00000479965 HIGD2BQ4VC39 106 aa12.56□□□□□ -0.4
CCDC88B-207ENST00000479965 X6R8D5 127 aa12.56□□□□□ -0.4
CCDC88B-207ENST00000479965 FLNAP21333 2647 aaKnown RBP12.56□□□□□ -0.4
CCDC88B-207ENST00000479965 ELOF1P60002 83 aaKnown RBP12.56□□□□□ -0.4
CCDC88B-207ENST00000479965 ESRGQ1W209 222 aa12.55□□□□□ -0.4
CCDC88B-207ENST00000479965 LINC00612Q8N6U2 182 aa12.55□□□□□ -0.4
CCDC88B-207ENST00000479965 HIVEP2P31629 2446 aa12.54□□□□□ -0.4
CCDC88B-207ENST00000479965 FAM30AQ9NZY2 134 aa12.54□□□□□ -0.4
CCDC88B-207ENST00000479965 DEFB135Q30KP9 77 aa12.53□□□□□ -0.4
CCDC88B-207ENST00000479965 OCR1Q9BZK8 76 aa12.53□□□□□ -0.4
CCDC88B-207ENST00000479965 DEFB113Q30KQ7 82 aa12.52□□□□□ -0.4
CCDC88B-207ENST00000479965 ERC2-IT1O76042 136 aa12.5□□□□□ -0.41
CCDC88B-207ENST00000479965 CAMK2N2Q96S95 79 aa12.5□□□□□ -0.41
CCDC88B-207ENST00000479965 V9GYY9 64 aa12.49□□□□□ -0.41
CCDC88B-207ENST00000479965 SMIM29Q86T20 159 aa12.48□□□□□ -0.41
CCDC88B-207ENST00000479965 Q6ZTC4 211 aa12.48□□□□□ -0.41
CCDC88B-207ENST00000479965 VPREB1P12018 145 aa12.46□□□□□ -0.41
CCDC88B-207ENST00000479965 PRB2P02812 416 aaPredicted RBP12.46□□□□□ -0.42
CCDC88B-207ENST00000479965 LYRM9A8MSI8 78 aa12.45□□□□□ -0.42
CCDC88B-207ENST00000479965 LINC00528Q8N1L1 170 aa12.45□□□□□ -0.42
CCDC88B-207ENST00000479965 M0R378 163 aa12.44□□□□□ -0.42
CCDC88B-207ENST00000479965 PRR4Q16378 134 aa12.43□□□□□ -0.42
CCDC88B-207ENST00000479965 F8WDY8 70 aa12.43□□□□□ -0.42
CCDC88B-207ENST00000479965 LELP1Q5T871 98 aa12.43□□□□□ -0.42
CCDC88B-207ENST00000479965 GVQW2A0A096LPI5 108 aaPredicted RBP12.42□□□□□ -0.42
CCDC88B-207ENST00000479965 VWFP04275 2813 aa12.41□□□□□ -0.42
CCDC88B-207ENST00000479965 Q6ZRU5 148 aa12.41□□□□□ -0.42
CCDC88B-207ENST00000479965 PRR34Q9NV39 138 aa12.4□□□□□ -0.42
CCDC88B-207ENST00000479965 UNC79Q9P2D8 2635 aa12.39□□□□□ -0.43
CCDC88B-207ENST00000479965 SEC61GP60059 68 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 269.6 ms