RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 CCL3L1P16619 93 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 GNG2P59768 71 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 DEFB112Q30KQ8 113 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 Q86TA4 180 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 SBSPONQ8IVN8 264 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 MYOZ3Q8TDC0 251 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 GAFA1Q96PS6 74 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 Q9H521 79 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 R4GMQ9 66 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 V9GYS6 101 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 AKAP9Q99996 3911 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 CSMD2Q7Z408 3487 aa1.79□□□□□ -2.12
VPS13D-207ENST00000476169 NAV3Q8IVL0 2385 aa1.79□□□□□ -2.12
VPS13D-207ENST00000476169 SPG11Q96JI7 2443 aa1.79□□□□□ -2.12
VPS13D-207ENST00000476169 CCDC168Q8NDH2 2452 aa1.79□□□□□ -2.12
VPS13D-207ENST00000476169 MYO9AB2RTY4 2548 aa1.79□□□□□ -2.12
VPS13D-207ENST00000476169 SETXQ7Z333 2677 aaKnown RBP1.79□□□□□ -2.12
VPS13D-207ENST00000476169 SNRPGP62308 76 aaKnown RBP1.79□□□□□ -2.12
VPS13D-207ENST00000476169 UBA52P62987 128 aaKnown RBP1.79□□□□□ -2.12
VPS13D-207ENST00000476169 FXYD3Q14802 87 aa1.79□□□□□ -2.12
VPS13D-207ENST00000476169 C20orf197Q8N268 126 aa1.79□□□□□ -2.12
VPS13D-207ENST00000476169 PPP1R1CQ8WVI7 109 aa1.79□□□□□ -2.12
VPS13D-207ENST00000476169 LINC00312Q9Y6C7 94 aa1.79□□□□□ -2.12
VPS13D-207ENST00000476169 F8P00451 2351 aa1.79□□□□□ -2.12
VPS13D-207ENST00000476169 HIVEP3Q5T1R4 2406 aa1.79□□□□□ -2.12
VPS13D-207ENST00000476169 NBEAQ8NFP9 2946 aa1.78□□□□□ -2.12
VPS13D-207ENST00000476169 MTORP42345 2549 aa1.78□□□□□ -2.12
VPS13D-207ENST00000476169 SNRNP200O75643 2136 aaKnown RBP1.78□□□□□ -2.12
VPS13D-207ENST00000476169 RBAKDNA6NC62 111 aa1.78□□□□□ -2.12
VPS13D-207ENST00000476169 SIX6O95475 246 aa1.78□□□□□ -2.12
VPS13D-207ENST00000476169 SSBP1Q04837 148 aaKnown RBP1.78□□□□□ -2.12
VPS13D-207ENST00000476169 Q6ZQY7 126 aa1.78□□□□□ -2.12
VPS13D-207ENST00000476169 ZNF818PQ6ZRF7 136 aa1.78□□□□□ -2.12
VPS13D-207ENST00000476169 OTOGQ6ZRI0 2925 aa1.78□□□□□ -2.12
VPS13D-207ENST00000476169 PDZD2O15018 2839 aa1.78□□□□□ -2.12
VPS13D-207ENST00000476169 ESPL1Q14674 2120 aa1.78□□□□□ -2.13
VPS13D-207ENST00000476169 NCOA6Q14686 2063 aaPredicted RBP1.78□□□□□ -2.13
VPS13D-207ENST00000476169 FLNCQ14315 2725 aa1.77□□□□□ -2.13
VPS13D-207ENST00000476169 ANKHD1Q8IWZ3 2542 aaKnown RBP1.77□□□□□ -2.13
VPS13D-207ENST00000476169 HIVEP2P31629 2446 aa1.77□□□□□ -2.13
VPS13D-207ENST00000476169 NCR3O14931 201 aa1.77□□□□□ -2.13
VPS13D-207ENST00000476169 UBE2D1P51668 147 aa1.77□□□□□ -2.13
VPS13D-207ENST00000476169 PIGYQ3MUY2 71 aa1.77□□□□□ -2.13
VPS13D-207ENST00000476169 FAM74A4Q5TZK3 123 aa1.77□□□□□ -2.13
VPS13D-207ENST00000476169 C10orf99Q6UWK7 81 aa1.77□□□□□ -2.13
VPS13D-207ENST00000476169 VMO1Q7Z5L0 202 aa1.77□□□□□ -2.13
VPS13D-207ENST00000476169 LEAP2Q969E1 77 aa1.77□□□□□ -2.13
VPS13D-207ENST00000476169 LINC00208Q96KT6 92 aa1.77□□□□□ -2.13
VPS13D-207ENST00000476169 SNHG12Q9BXW3 62 aa1.77□□□□□ -2.13
VPS13D-207ENST00000476169 KAAG1Q9UBP8 84 aa1.77□□□□□ -2.13
VPS13D-207ENST00000476169 USF3Q68DE3 2245 aa1.76□□□□□ -2.13
VPS13D-207ENST00000476169 SPTBN1Q01082 2364 aaKnown RBP1.76□□□□□ -2.13
VPS13D-207ENST00000476169 CSPG4Q6UVK1 2322 aa1.76□□□□□ -2.13
VPS13D-207ENST00000476169 NBDYA0A0U1RRE5 68 aa1.76□□□□□ -2.13
VPS13D-207ENST00000476169 ZNF56Q15929 161 aa1.76□□□□□ -2.13
VPS13D-207ENST00000476169 C5orf56Q8N8D9 126 aa1.76□□□□□ -2.13
VPS13D-207ENST00000476169 CYP4F30PQ9H0H9 118 aa1.76□□□□□ -2.13
VPS13D-207ENST00000476169 BET1LQ9NYM9 111 aa1.76□□□□□ -2.13
VPS13D-207ENST00000476169 HIVEP1P15822 2718 aa1.76□□□□□ -2.13
VPS13D-207ENST00000476169 ANKRD17O75179 2603 aaKnown RBP1.76□□□□□ -2.13
VPS13D-207ENST00000476169 CREBBPQ92793 2442 aa1.76□□□□□ -2.13
VPS13D-207ENST00000476169 ABCA2Q9BZC7 2435 aa1.76□□□□□ -2.13
VPS13D-207ENST00000476169 CNTRLQ7Z7A1 2325 aa1.75□□□□□ -2.13
VPS13D-207ENST00000476169 TEP1Q99973 2627 aaKnown RBP1.75□□□□□ -2.13
VPS13D-207ENST00000476169 TRBV7-1A0A0A6YYK4 115 aa1.75□□□□□ -2.13
VPS13D-207ENST00000476169 A0A1W2PPM0 123 aa1.75□□□□□ -2.13
VPS13D-207ENST00000476169 H3BQ15 152 aa1.75□□□□□ -2.13
VPS13D-207ENST00000476169 H3BUX3 64 aa1.75□□□□□ -2.13
VPS13D-207ENST00000476169 M0R1W7 72 aa1.75□□□□□ -2.13
VPS13D-207ENST00000476169 CAV3P56539 151 aa1.75□□□□□ -2.13
VPS13D-207ENST00000476169 EDDM3BP56851 147 aa1.75□□□□□ -2.13
VPS13D-207ENST00000476169 KRTAP6-3Q3LI67 103 aa1.75□□□□□ -2.13
VPS13D-207ENST00000476169 COX7B2Q8TF08 81 aa1.75□□□□□ -2.13
VPS13D-207ENST00000476169 LINC00474Q9P2X8 69 aa1.75□□□□□ -2.13
VPS13D-207ENST00000476169 PKDREJQ9NTG1 2253 aa1.75□□□□□ -2.13
VPS13D-207ENST00000476169 ACANP16112 2415 aa1.75□□□□□ -2.13
VPS13D-207ENST00000476169 TEX15Q9BXT5 2789 aa1.74□□□□□ -2.13
VPS13D-207ENST00000476169 CLPSL1A2RUU4 121 aa1.74□□□□□ -2.13
VPS13D-207ENST00000476169 TMEM14DPA8MWL7 114 aa1.74□□□□□ -2.13
VPS13D-207ENST00000476169 CYB5AP00167 134 aa1.74□□□□□ -2.13
VPS13D-207ENST00000476169 C6orf201Q7Z4U5 140 aa1.74□□□□□ -2.13
VPS13D-207ENST00000476169 KRTAP13-1Q8IUC0 172 aa1.74□□□□□ -2.13
VPS13D-207ENST00000476169 VAMP8Q9BV40 100 aa1.74□□□□□ -2.13
VPS13D-207ENST00000476169 SCP2D1Q9UJQ7 156 aa1.74□□□□□ -2.13
VPS13D-207ENST00000476169 HILPDAQ9Y5L2 63 aa1.74□□□□□ -2.13
VPS13D-207ENST00000476169 AKAP6Q13023 2319 aa1.74□□□□□ -2.13
VPS13D-207ENST00000476169 ADGRG4Q8IZF6 3080 aa1.74□□□□□ -2.13
VPS13D-207ENST00000476169 MYO7BQ6PIF6 2116 aa1.73□□□□□ -2.13
VPS13D-207ENST00000476169 KRTDAPP60985 99 aa1.73□□□□□ -2.13
VPS13D-207ENST00000476169 HMGN3Q15651 99 aa1.73□□□□□ -2.13
VPS13D-207ENST00000476169 RPL39P5Q59GN2 51 aa1.73□□□□□ -2.13
VPS13D-207ENST00000476169 HEPN1Q6WQI6 88 aa1.73□□□□□ -2.13
VPS13D-207ENST00000476169 Q8N6K4 173 aa1.73□□□□□ -2.13
VPS13D-207ENST00000476169 ARHGAP5-AS1Q96IT6 56 aa1.73□□□□□ -2.13
VPS13D-207ENST00000476169 V9GYV3 84 aa1.73□□□□□ -2.13
VPS13D-207ENST00000476169 ROS1P08922 2347 aa1.73□□□□□ -2.13
VPS13D-207ENST00000476169 DNAH9Q9NYC9 4486 aa1.73□□□□□ -2.13
VPS13D-207ENST00000476169 ABCA4P78363 2273 aa1.73□□□□□ -2.13
VPS13D-207ENST00000476169 ZNF469Q96JG9 3925 aaPredicted RBP1.72□□□□□ -2.13
VPS13D-207ENST00000476169 APCP25054 2843 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms