RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 NXT2Q9NPJ8 142 aaKnown RBP10.07□□□□□ -0.8
SHH-205ENST00000472308 ERG28Q9UKR5 140 aa10.06□□□□□ -0.8
SHH-205ENST00000472308 LINC00483Q53H64 154 aa10.05□□□□□ -0.8
SHH-205ENST00000472308 PCOTHQ58A44 107 aa10.05□□□□□ -0.8
SHH-205ENST00000472308 SSPOA2VEC9 5147 aa10.04□□□□□ -0.8
SHH-205ENST00000472308 IGLV8-61A0A075B6I0 122 aa10.04□□□□□ -0.8
SHH-205ENST00000472308 SCGB3A1Q96QR1 104 aa10.04□□□□□ -0.8
SHH-205ENST00000472308 CST9LQ9H4G1 147 aa10.04□□□□□ -0.8
SHH-205ENST00000472308 USH2AO75445 5202 aa10.03□□□□□ -0.8
SHH-205ENST00000472308 IGLV5-39A0A0G2JS06 123 aa10.03□□□□□ -0.8
SHH-205ENST00000472308 SLC25A20O43772 301 aa10.03□□□□□ -0.8
SHH-205ENST00000472308 G0S2P27469 103 aa10.02□□□□□ -0.81
SHH-205ENST00000472308 MOBPQ13875 183 aa10.02□□□□□ -0.81
SHH-205ENST00000472308 SMCR5Q8TEV8 140 aa10.02□□□□□ -0.81
SHH-205ENST00000472308 COX17Q14061 63 aa10.01□□□□□ -0.81
SHH-205ENST00000472308 MRPL18Q9H0U6 180 aaKnown RBP10.01□□□□□ -0.81
SHH-205ENST00000472308 AKAP14Q86UN6 197 aa10□□□□□ -0.81
SHH-205ENST00000472308 IGLV9-49A0A0B4J1Y8 123 aa9.99□□□□□ -0.81
SHH-205ENST00000472308 H3BRM9 83 aa9.99□□□□□ -0.81
SHH-205ENST00000472308 SPRR1AP35321 89 aa9.99□□□□□ -0.81
SHH-205ENST00000472308 ZNF625Q96I27 306 aaPredicted RBP9.99□□□□□ -0.81
SHH-205ENST00000472308 KRTAP4-16G5E9R7 235 aaPredicted RBP9.98□□□□□ -0.81
SHH-205ENST00000472308 M0R2T5 61 aa9.98□□□□□ -0.81
SHH-205ENST00000472308 PRYO14603 147 aa9.97□□□□□ -0.81
SHH-205ENST00000472308 PEA15Q15121 130 aa9.97□□□□□ -0.81
SHH-205ENST00000472308 GAGE2AQ6NT46 116 aa9.97□□□□□ -0.81
SHH-205ENST00000472308 SSBP3-AS1Q7Z2R9 100 aa9.97□□□□□ -0.81
SHH-205ENST00000472308 PMVKQ15126 192 aa9.96□□□□□ -0.82
SHH-205ENST00000472308 IGLC3P0DOY3 106 aa9.94□□□□□ -0.82
SHH-205ENST00000472308 ERC2-IT1O76042 136 aa9.93□□□□□ -0.82
SHH-205ENST00000472308 ZNF22P17026 224 aaPredicted RBP9.93□□□□□ -0.82
SHH-205ENST00000472308 KCNQ1DNQ9H478 68 aa9.93□□□□□ -0.82
SHH-205ENST00000472308 LINC01546A6NGU7 62 aa9.91□□□□□ -0.82
SHH-205ENST00000472308 KIAA1644Q3SXP7 199 aa9.91□□□□□ -0.82
SHH-205ENST00000472308 ETDCA0A1B0GVM5 59 aa9.9□□□□□ -0.82
SHH-205ENST00000472308 LINC01549A6NIU2 74 aa9.89□□□□□ -0.83
SHH-205ENST00000472308 C9orf92A6NGG3 77 aa9.88□□□□□ -0.83
SHH-205ENST00000472308 NCR3O14931 201 aa9.88□□□□□ -0.83
SHH-205ENST00000472308 LINC00158P58513 81 aa9.88□□□□□ -0.83
SHH-205ENST00000472308 FCGBPQ9Y6R7 5405 aaPredicted RBP9.87□□□□□ -0.83
SHH-205ENST00000472308 A0A0U1RRA0 63 aa9.86□□□□□ -0.83
SHH-205ENST00000472308 B5MCH6 92 aa9.86□□□□□ -0.83
SHH-205ENST00000472308 SFTA2Q6UW10 78 aa9.86□□□□□ -0.83
SHH-205ENST00000472308 TRBV10-3A0A0K0K1G6 114 aa9.85□□□□□ -0.83
SHH-205ENST00000472308 BOD1L2Q8IYS8 172 aa9.85□□□□□ -0.83
SHH-205ENST00000472308 ANAPC16Q96DE5 110 aa9.85□□□□□ -0.83
SHH-205ENST00000472308 Q9BRP9 147 aa9.85□□□□□ -0.83
SHH-205ENST00000472308 MT-ND4LP03901 98 aa9.83□□□□□ -0.84
SHH-205ENST00000472308 COX6B2Q6YFQ2 88 aa9.83□□□□□ -0.84
SHH-205ENST00000472308 C9orf153Q5TBE3 101 aa9.82□□□□□ -0.84
SHH-205ENST00000472308 C11orf86A6NJI1 115 aa9.81□□□□□ -0.84
SHH-205ENST00000472308 NDUFA6P56556 154 aa9.81□□□□□ -0.84
SHH-205ENST00000472308 A0A096LNJ9 63 aa9.8□□□□□ -0.84
SHH-205ENST00000472308 SMIM13P0DJ93 91 aa9.8□□□□□ -0.84
SHH-205ENST00000472308 hCG_2014768A0A024R1R8 64 aa9.79□□□□□ -0.84
SHH-205ENST00000472308 TRAV9-1A0A075B6T8 112 aa9.78□□□□□ -0.84
SHH-205ENST00000472308 TMEM170BQ5T4T1 132 aa9.78□□□□□ -0.84
SHH-205ENST00000472308 Q6ZRX8 168 aa9.78□□□□□ -0.84
SHH-205ENST00000472308 MIR7-3HGQ8N6C7 128 aa9.77□□□□□ -0.85
SHH-205ENST00000472308 IGLV6-57P01721 117 aa9.76□□□□□ -0.85
SHH-205ENST00000472308 FA2HQ7L5A8 372 aa9.76□□□□□ -0.85
SHH-205ENST00000472308 LIMD2Q9BT23 127 aa9.74□□□□□ -0.85
SHH-205ENST00000472308 SMCO4Q9NRQ5 59 aa9.74□□□□□ -0.85
SHH-205ENST00000472308 ATP6V1G1O75348 118 aa9.72□□□□□ -0.85
SHH-205ENST00000472308 RPL37P61927 97 aaKnown RBP9.72□□□□□ -0.85
SHH-205ENST00000472308 HRCT1Q6UXD1 115 aa9.72□□□□□ -0.85
SHH-205ENST00000472308 ST20-AS1Q8NBB2 130 aa9.72□□□□□ -0.85
SHH-205ENST00000472308 DDTP30046 118 aa9.71□□□□□ -0.86
SHH-205ENST00000472308 S100A12P80511 92 aa9.71□□□□□ -0.86
SHH-205ENST00000472308 MEIG1Q5JSS6 88 aa9.71□□□□□ -0.86
SHH-205ENST00000472308 BAGE3Q86Y29 109 aa9.71□□□□□ -0.86
SHH-205ENST00000472308 TMEM223A0PJW6 202 aa9.7□□□□□ -0.86
SHH-205ENST00000472308 URB1-AS1Q96HZ7 61 aa9.7□□□□□ -0.86
SHH-205ENST00000472308 PMCHL1Q16048 86 aa9.67□□□□□ -0.86
SHH-205ENST00000472308 KRTAP9-8Q9BYQ0 159 aa9.67□□□□□ -0.86
SHH-205ENST00000472308 SYNE2Q8WXH0 6885 aaKnown RBP9.66□□□□□ -0.86
SHH-205ENST00000472308 TRBV10-2A0A0K0K1G8 114 aa9.66□□□□□ -0.86
SHH-205ENST00000472308 MACF1Q9UPN3 7388 aaKnown RBP9.65□□□□□ -0.86
SHH-205ENST00000472308 HBDP02042 147 aa9.65□□□□□ -0.86
SHH-205ENST00000472308 LOC107984156A0A0G2JMH3 177 aa9.64□□□□□ -0.87
SHH-205ENST00000472308 CFC1P0CG37 223 aa9.64□□□□□ -0.87
SHH-205ENST00000472308 HERV-K104P63124 156 aa9.64□□□□□ -0.87
SHH-205ENST00000472308 ARL17AQ8IVW1 177 aa9.64□□□□□ -0.87
SHH-205ENST00000472308 CHTOPQ9Y3Y2 248 aaKnown RBP9.64□□□□□ -0.87
SHH-205ENST00000472308 JOSD1Q15040 202 aaPredicted RBP9.63□□□□□ -0.87
SHH-205ENST00000472308 SPRR1BP22528 89 aa9.62□□□□□ -0.87
SHH-205ENST00000472308 FABP9Q0Z7S8 132 aa9.61□□□□□ -0.87
SHH-205ENST00000472308 SPANXB1Q9NS25 103 aaPredicted RBP9.61□□□□□ -0.87
SHH-205ENST00000472308 TRAV23DV6A0A075B6W5 121 aa9.6□□□□□ -0.87
SHH-205ENST00000472308 C5orf52A6NGY3 159 aa9.6□□□□□ -0.87
SHH-205ENST00000472308 LINC00614P0C842 121 aa9.6□□□□□ -0.87
SHH-205ENST00000472308 KRTAP19-1Q8IUB9 90 aa9.6□□□□□ -0.87
SHH-205ENST00000472308 LINC00587B1AMM8 73 aa9.59□□□□□ -0.87
SHH-205ENST00000472308 MAP1LC3CQ9BXW4 147 aa9.59□□□□□ -0.87
SHH-205ENST00000472308 ZNF73O43830 326 aaPredicted RBP9.58□□□□□ -0.88
SHH-205ENST00000472308 C1orf195Q5TG92 126 aa9.58□□□□□ -0.88
SHH-205ENST00000472308 C18orf32Q8TCD1 76 aa9.58□□□□□ -0.88
SHH-205ENST00000472308 H7C2G1 150 aa9.57□□□□□ -0.88
SHH-205ENST00000472308 S100A7L2Q5SY68 101 aa9.57□□□□□ -0.88
SHH-205ENST00000472308 TSPEAR-AS2P59090 65 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms