RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 B5MCH6 92 aa7.12□□□□□ -1.27
SCN9A-205ENST00000454569 CXCL5P42830 114 aa7.12□□□□□ -1.27
SCN9A-205ENST00000454569 CKS1BP61024 79 aa7.12□□□□□ -1.27
SCN9A-205ENST00000454569 ADAMTSL4-AS1Q5T5F5 129 aa7.12□□□□□ -1.27
SCN9A-205ENST00000454569 C2orf48Q96LS8 159 aa7.12□□□□□ -1.27
SCN9A-205ENST00000454569 NHP2Q9NX24 153 aaKnown RBP7.12□□□□□ -1.27
SCN9A-205ENST00000454569 SYCNQ0VAF6 134 aa7.11□□□□□ -1.27
SCN9A-205ENST00000454569 Q6ZVH6 145 aa7.11□□□□□ -1.27
SCN9A-205ENST00000454569 DAND5Q8N907 189 aa7.11□□□□□ -1.27
SCN9A-205ENST00000454569 SMIM13P0DJ93 91 aa7.1□□□□□ -1.27
SCN9A-205ENST00000454569 PFN2P35080 140 aa7.1□□□□□ -1.27
SCN9A-205ENST00000454569 KRTAP10-2P60368 255 aa7.1□□□□□ -1.27
SCN9A-205ENST00000454569 RPL24P83731 157 aaKnown RBP7.1□□□□□ -1.27
SCN9A-205ENST00000454569 NPC2P61916 151 aa7.09□□□□□ -1.27
SCN9A-205ENST00000454569 MUSTN1Q8IVN3 82 aa7.09□□□□□ -1.27
SCN9A-205ENST00000454569 PKHD1P08F94 4074 aa7.09□□□□□ -1.27
SCN9A-205ENST00000454569 IFITM1P13164 125 aa7.08□□□□□ -1.28
SCN9A-205ENST00000454569 COPS9Q8WXC6 57 aa7.08□□□□□ -1.28
SCN9A-205ENST00000454569 CARD19Q96LW7 228 aa7.08□□□□□ -1.28
SCN9A-205ENST00000454569 ERG28Q9UKR5 140 aa7.08□□□□□ -1.28
SCN9A-205ENST00000454569 K7ERJ3 54 aa7.08□□□□□ -1.28
SCN9A-205ENST00000454569 K7ERU9 68 aa7.08□□□□□ -1.28
SCN9A-205ENST00000454569 TAX1BP3O14907 124 aa7.08□□□□□ -1.28
SCN9A-205ENST00000454569 CNBPP62633 177 aaKnown RBP7.08□□□□□ -1.28
SCN9A-205ENST00000454569 MTURNQ8N3F0 131 aa7.08□□□□□ -1.28
SCN9A-205ENST00000454569 RAB37Q96AX2 223 aa7.08□□□□□ -1.28
SCN9A-205ENST00000454569 A4D1N5 150 aa7.07□□□□□ -1.28
SCN9A-205ENST00000454569 LINC00158P58513 81 aa7.07□□□□□ -1.28
SCN9A-205ENST00000454569 UBE2V1Q13404 147 aa7.07□□□□□ -1.28
SCN9A-205ENST00000454569 C14orf177Q52M58 125 aa7.07□□□□□ -1.28
SCN9A-205ENST00000454569 SOSTDC1Q6X4U4 206 aa7.07□□□□□ -1.28
SCN9A-205ENST00000454569 Q6ZRP5 223 aa7.07□□□□□ -1.28
SCN9A-205ENST00000454569 TRBV30A0A0K0K1B3 111 aa7.06□□□□□ -1.28
SCN9A-205ENST00000454569 A0A1B0GWB2 263 aa7.06□□□□□ -1.28
SCN9A-205ENST00000454569 MIR7-3HGQ8N6C7 128 aa7.06□□□□□ -1.28
SCN9A-205ENST00000454569 LINC00308Q8TCZ7 52 aa7.06□□□□□ -1.28
SCN9A-205ENST00000454569 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.05□□□□□ -1.28
SCN9A-205ENST00000454569 C9orf163Q8N9P6 203 aa7.05□□□□□ -1.28
SCN9A-205ENST00000454569 Q8NDZ9 215 aa7.05□□□□□ -1.28
SCN9A-205ENST00000454569 DYNC1H1Q14204 4646 aaKnown RBP7.05□□□□□ -1.28
SCN9A-205ENST00000454569 DNAH8Q96JB1 4490 aa7.05□□□□□ -1.28
SCN9A-205ENST00000454569 A0A1B0GVY2 172 aa7.04□□□□□ -1.28
SCN9A-205ENST00000454569 F8WDY8 70 aa7.04□□□□□ -1.28
SCN9A-205ENST00000454569 PANO1I0J062 215 aa7.04□□□□□ -1.28
SCN9A-205ENST00000454569 COX17Q14061 63 aa7.04□□□□□ -1.28
SCN9A-205ENST00000454569 OCIAD2Q56VL3 154 aa7.04□□□□□ -1.28
SCN9A-205ENST00000454569 A0A0B4J2C4 111 aa7.03□□□□□ -1.28
SCN9A-205ENST00000454569 CFC1BP0CG36 223 aa7.03□□□□□ -1.28
SCN9A-205ENST00000454569 CFC1P0CG37 223 aa7.03□□□□□ -1.28
SCN9A-205ENST00000454569 GAGE2EQ4V326 116 aa7.03□□□□□ -1.28
SCN9A-205ENST00000454569 SDIM1Q6ZPB5 146 aa7.03□□□□□ -1.28
SCN9A-205ENST00000454569 PPDPFQ9H3Y8 114 aa7.03□□□□□ -1.28
SCN9A-205ENST00000454569 XAGE1AQ9HD64 81 aa7.03□□□□□ -1.28
SCN9A-205ENST00000454569 GAGE2DQ9UEU5 116 aa7.03□□□□□ -1.28
SCN9A-205ENST00000454569 A0A096LNI7 61 aa7.03□□□□□ -1.28
SCN9A-205ENST00000454569 NDUFC2-KCTD14E9PQ53 114 aa7.03□□□□□ -1.28
SCN9A-205ENST00000454569 CHTF8P0CG12 524 aa7.03□□□□□ -1.28
SCN9A-205ENST00000454569 C9orf129Q5T035 196 aaKnown RBP7.03□□□□□ -1.28
SCN9A-205ENST00000454569 SND1-IT1Q9HBX3 110 aa7.03□□□□□ -1.28
SCN9A-205ENST00000454569 IGLV5-52A0A0A0MRZ9 124 aa7.02□□□□□ -1.29
SCN9A-205ENST00000454569 H3BUT2 72 aa7.02□□□□□ -1.29
SCN9A-205ENST00000454569 TLX1NBP0CAT3 122 aa7.02□□□□□ -1.29
SCN9A-205ENST00000454569 RPL18AQ02543 176 aaKnown RBP7.02□□□□□ -1.29
SCN9A-205ENST00000454569 GAGE2BQ13066 116 aa7.02□□□□□ -1.29
SCN9A-205ENST00000454569 NAA38Q9BRA0 125 aaKnown RBP7.02□□□□□ -1.29
SCN9A-205ENST00000454569 PRO1854Q9UHT4 67 aa7.02□□□□□ -1.29
SCN9A-205ENST00000454569 LINC00336Q6ZUF6 198 aa7.01□□□□□ -1.29
SCN9A-205ENST00000454569 KRTAP7-1Q8IUC3 87 aa7.01□□□□□ -1.29
SCN9A-205ENST00000454569 LRP1BQ9NZR2 4599 aa7.01□□□□□ -1.29
SCN9A-205ENST00000454569 EPPK1P58107 5090 aaKnown RBP7.01□□□□□ -1.29
SCN9A-205ENST00000454569 LOC107984640A0A0U1RRK4 108 aa7□□□□□ -1.29
SCN9A-205ENST00000454569 FAM168BA1KXE4 195 aa7□□□□□ -1.29
SCN9A-205ENST00000454569 IGKV2-24A0A0C4DH68 120 aa6.99□□□□□ -1.29
SCN9A-205ENST00000454569 TSPAN13O95857 204 aa6.99□□□□□ -1.29
SCN9A-205ENST00000454569 KRTAP10-1P60331 282 aa6.99□□□□□ -1.29
SCN9A-205ENST00000454569 PRR3P79522 188 aaKnown RBP6.99□□□□□ -1.29
SCN9A-205ENST00000454569 VAMP3Q15836 100 aa6.99□□□□□ -1.29
SCN9A-205ENST00000454569 Q1RN00 199 aa6.99□□□□□ -1.29
SCN9A-205ENST00000454569 LOC107984156A0A0G2JMH3 177 aa6.98□□□□□ -1.29
SCN9A-205ENST00000454569 A0A1W2PPM0 123 aa6.98□□□□□ -1.29
SCN9A-205ENST00000454569 H7C2G1 150 aa6.98□□□□□ -1.29
SCN9A-205ENST00000454569 SERTAD4-AS1Q5TG53 156 aa6.98□□□□□ -1.29
SCN9A-205ENST00000454569 ARL17AQ8IVW1 177 aa6.98□□□□□ -1.29
SCN9A-205ENST00000454569 A0A1W2PNN7 141 aa6.97□□□□□ -1.29
SCN9A-205ENST00000454569 C16orf90A8MZG2 172 aa6.97□□□□□ -1.29
SCN9A-205ENST00000454569 FABP2P12104 132 aa6.97□□□□□ -1.29
SCN9A-205ENST00000454569 RPL13AP40429 203 aaKnown RBP6.97□□□□□ -1.29
SCN9A-205ENST00000454569 IGKV2-28A0A075B6P5 120 aa6.95□□□□□ -1.3
SCN9A-205ENST00000454569 IGKV2D-28P01615 120 aa6.95□□□□□ -1.3
SCN9A-205ENST00000454569 TRAV13-2A0A0B4J235 113 aa6.95□□□□□ -1.3
SCN9A-205ENST00000454569 NDUFC2O95298 119 aa6.95□□□□□ -1.3
SCN9A-205ENST00000454569 VPREB1P12018 145 aa6.95□□□□□ -1.3
SCN9A-205ENST00000454569 PSMB2P49721 201 aa6.95□□□□□ -1.3
SCN9A-205ENST00000454569 HAMPP81172 84 aa6.95□□□□□ -1.3
SCN9A-205ENST00000454569 LYRM7Q5U5X0 104 aa6.95□□□□□ -1.3
SCN9A-205ENST00000454569 APOBP04114 4563 aaKnown RBP6.94□□□□□ -1.3
SCN9A-205ENST00000454569 GTF2H5Q6ZYL4 71 aa6.94□□□□□ -1.3
SCN9A-205ENST00000454569 LINC00337Q8N6G1 96 aa6.94□□□□□ -1.3
SCN9A-205ENST00000454569 SPACA4Q8TDM5 124 aa6.94□□□□□ -1.3
SCN9A-205ENST00000454569 SPCS1Q9Y6A9 102 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms