RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 RPL24P83731 157 aaKnown RBP7.14□□□□□ -1.27
USP40-210ENST00000454354 Q8NDZ9 215 aa7.14□□□□□ -1.27
USP40-210ENST00000454354 A0A087X002 238 aa7.13□□□□□ -1.27
USP40-210ENST00000454354 UBE2AP49459 152 aa7.13□□□□□ -1.27
USP40-210ENST00000454354 FAM19A2Q8N3H0 131 aa7.13□□□□□ -1.27
USP40-210ENST00000454354 KRTAP3-3Q9BYR6 98 aa7.13□□□□□ -1.27
USP40-210ENST00000454354 KRTAP3-2Q9BYR7 98 aa7.13□□□□□ -1.27
USP40-210ENST00000454354 LINC00310P59036 64 aa7.12□□□□□ -1.27
USP40-210ENST00000454354 TMEM126AQ9H061 195 aa7.12□□□□□ -1.27
USP40-210ENST00000454354 CRYGAP11844 174 aa7.11□□□□□ -1.27
USP40-210ENST00000454354 TMEM238C9JI98 176 aa7.1□□□□□ -1.27
USP40-210ENST00000454354 M0R378 163 aa7.1□□□□□ -1.27
USP40-210ENST00000454354 SERF1AO75920 110 aa7.1□□□□□ -1.27
USP40-210ENST00000454354 LINC00158P58513 81 aa7.1□□□□□ -1.27
USP40-210ENST00000454354 FAM229BQ4G0N7 80 aa7.1□□□□□ -1.27
USP40-210ENST00000454354 LEPROTL1O95214 131 aa7.09□□□□□ -1.27
USP40-210ENST00000454354 HERV-K104P63124 156 aa7.09□□□□□ -1.27
USP40-210ENST00000454354 SMIM13P0DJ93 91 aa7.08□□□□□ -1.28
USP40-210ENST00000454354 PRLHP81277 87 aa7.08□□□□□ -1.28
USP40-210ENST00000454354 KRTAP13-2Q52LG2 175 aa7.08□□□□□ -1.28
USP40-210ENST00000454354 FAM19A1Q7Z5A9 133 aa7.08□□□□□ -1.28
USP40-210ENST00000454354 TYMSOSQ8TAI1 123 aa7.08□□□□□ -1.28
USP40-210ENST00000454354 A0A0U1RRA0 63 aa7.07□□□□□ -1.28
USP40-210ENST00000454354 PLNP26678 52 aa7.07□□□□□ -1.28
USP40-210ENST00000454354 ANAPC11Q9NYG5 84 aa7.07□□□□□ -1.28
USP40-210ENST00000454354 NDUFA12Q9UI09 145 aa7.07□□□□□ -1.28
USP40-210ENST00000454354 MYMXA0A1B0GTQ4 84 aa7.06□□□□□ -1.28
USP40-210ENST00000454354 LINC00587B1AMM8 73 aa7.06□□□□□ -1.28
USP40-210ENST00000454354 H0Y8G0 127 aa7.06□□□□□ -1.28
USP40-210ENST00000454354 TSPEAR-AS2P59090 65 aa7.06□□□□□ -1.28
USP40-210ENST00000454354 MEIG1Q5JSS6 88 aa7.06□□□□□ -1.28
USP40-210ENST00000454354 MIR7-3HGQ8N6C7 128 aa7.06□□□□□ -1.28
USP40-210ENST00000454354 HSPB8Q9UJY1 196 aa7.06□□□□□ -1.28
USP40-210ENST00000454354 IGKV2D-26A0A0A0MRZ7 120 aa7.05□□□□□ -1.28
USP40-210ENST00000454354 LEPROTO15243 131 aa7.05□□□□□ -1.28
USP40-210ENST00000454354 BOD1L2Q8IYS8 172 aa7.05□□□□□ -1.28
USP40-210ENST00000454354 PRYO14603 147 aa7.04□□□□□ -1.28
USP40-210ENST00000454354 DPM2O94777 84 aa7.04□□□□□ -1.28
USP40-210ENST00000454354 PRR4Q16378 134 aa7.04□□□□□ -1.28
USP40-210ENST00000454354 PLEKHB2Q96CS7 222 aa7.04□□□□□ -1.28
USP40-210ENST00000454354 MAP1LC3CQ9BXW4 147 aa7.04□□□□□ -1.28
USP40-210ENST00000454354 LOC107984156A0A0G2JMH3 177 aa7.03□□□□□ -1.28
USP40-210ENST00000454354 TSPAN13O95857 204 aa7.03□□□□□ -1.28
USP40-210ENST00000454354 FABP4P15090 132 aa7.03□□□□□ -1.28
USP40-210ENST00000454354 SPRR1AP35321 89 aa7.03□□□□□ -1.28
USP40-210ENST00000454354 ARL17AQ8IVW1 177 aa7.03□□□□□ -1.28
USP40-210ENST00000454354 KCNQ1DNQ9H478 68 aa7.03□□□□□ -1.28
USP40-210ENST00000454354 J3QQQ9 107 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 NCR3O14931 201 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 HIST1H2BKO60814 126 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 IGKCP01834 107 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 HIST1H2BJP06899 126 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 HIST1H2BOP23527 126 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 HIST1H2BBP33778 126 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 NMUP48645 174 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 HIST1H2BDP58876 126 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 HERVK_113P61574 105 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 HIST1H2BCP62807 126 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 HIST2H2BEQ16778 126 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.02□□□□□ -1.29
USP40-210ENST00000454354 LINC00337Q8N6G1 96 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 HIST1H2BHQ93079 126 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 HIST1H2BNQ99877 126 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 HIST1H2BMQ99879 126 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 HIGD2AQ9BW72 106 aa7.02□□□□□ -1.29
USP40-210ENST00000454354 KRTAP4-16G5E9R7 235 aaPredicted RBP7.01□□□□□ -1.29
USP40-210ENST00000454354 CTAG1AP78358 180 aa7.01□□□□□ -1.29
USP40-210ENST00000454354 LINC00304Q8N9R0 145 aa7.01□□□□□ -1.29
USP40-210ENST00000454354 PMCHL2Q9BQD1 86 aa7.01□□□□□ -1.29
USP40-210ENST00000454354 TRBV10-3A0A0K0K1G6 114 aa7□□□□□ -1.29
USP40-210ENST00000454354 SPRR4Q96PI1 79 aa7□□□□□ -1.29
USP40-210ENST00000454354 LGALS3P17931 250 aaKnown RBP6.99□□□□□ -1.29
USP40-210ENST00000454354 DAND5Q8N907 189 aa6.99□□□□□ -1.29
USP40-210ENST00000454354 TRBV10-2A0A0K0K1G8 114 aa6.98□□□□□ -1.29
USP40-210ENST00000454354 S100A6P06703 90 aa6.98□□□□□ -1.29
USP40-210ENST00000454354 ZNF706Q9Y5V0 76 aaPredicted RBP6.98□□□□□ -1.29
USP40-210ENST00000454354 ETDCA0A1B0GVM5 59 aa6.97□□□□□ -1.29
USP40-210ENST00000454354 C3orf22Q8N5N4 141 aa6.97□□□□□ -1.29
USP40-210ENST00000454354 MUC2Q02817 5179 aa6.97□□□□□ -1.29
USP40-210ENST00000454354 E9PLD3 99 aa6.96□□□□□ -1.3
USP40-210ENST00000454354 SYS1-DBNDD2H3BUS1 97 aa6.96□□□□□ -1.3
USP40-210ENST00000454354 NDUFC2O95298 119 aa6.96□□□□□ -1.3
USP40-210ENST00000454354 SMCR5Q8TEV8 140 aa6.96□□□□□ -1.3
USP40-210ENST00000454354 SPANXB1Q9NS25 103 aaPredicted RBP6.96□□□□□ -1.3
USP40-210ENST00000454354 B5MCH6 92 aa6.95□□□□□ -1.3
USP40-210ENST00000454354 DDTP30046 118 aa6.95□□□□□ -1.3
USP40-210ENST00000454354 S100A12P80511 92 aa6.95□□□□□ -1.3
USP40-210ENST00000454354 COA6Q5JTJ3 125 aaKnown RBP6.95□□□□□ -1.3
USP40-210ENST00000454354 MIEN1Q9BRT3 115 aa6.95□□□□□ -1.3
USP40-210ENST00000454354 A0A0J9YXY3 114 aa6.94□□□□□ -1.3
USP40-210ENST00000454354 IGLV6-57P01721 117 aa6.94□□□□□ -1.3
USP40-210ENST00000454354 S100A2P29034 98 aa6.94□□□□□ -1.3
USP40-210ENST00000454354 LINC00483Q53H64 154 aa6.94□□□□□ -1.3
USP40-210ENST00000454354 LINC01545Q5VT33 79 aa6.94□□□□□ -1.3
USP40-210ENST00000454354 ADAMTSL4-AS1Q5T5F5 129 aa6.93□□□□□ -1.3
USP40-210ENST00000454354 SOSTDC1Q6X4U4 206 aa6.93□□□□□ -1.3
USP40-210ENST00000454354 RETNLBQ9BQ08 111 aa6.93□□□□□ -1.3
USP40-210ENST00000454354 EIF4EBP3O60516 100 aaPredicted RBP6.92□□□□□ -1.3
USP40-210ENST00000454354 SPAG11AQ6PDA7 123 aa6.92□□□□□ -1.3
USP40-210ENST00000454354 PET117Q6UWS5 81 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms