RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 A0A087WZ39 114 aa13.32□□□□□ -0.28
HMGA1-205ENST00000447654 IGHV3OR16-9A0A0B4J2B5 98 aa13.32□□□□□ -0.28
HMGA1-205ENST00000447654 FAM229BQ4G0N7 80 aa13.32□□□□□ -0.28
HMGA1-205ENST00000447654 MPLKIPQ8TAP9 179 aa13.32□□□□□ -0.28
HMGA1-205ENST00000447654 WNK1Q9H4A3 2382 aa13.31□□□□□ -0.28
HMGA1-205ENST00000447654 C11orf68Q9H3H3 251 aaKnown RBP13.3□□□□□ -0.28
HMGA1-205ENST00000447654 PRYO14603 147 aa13.28□□□□□ -0.28
HMGA1-205ENST00000447654 FUSP35637 526 aaKnown RBP eCLIP13.28□□□□□ -0.28
HMGA1-205ENST00000447654 LINC00575Q6W349 94 aa13.28□□□□□ -0.28
HMGA1-205ENST00000447654 BPY2O14599 106 aa13.26□□□□□ -0.29
HMGA1-205ENST00000447654 INSP01308 110 aa13.26□□□□□ -0.29
HMGA1-205ENST00000447654 Q6ZTC4 211 aa13.26□□□□□ -0.29
HMGA1-205ENST00000447654 ESM1Q9NQ30 184 aa13.26□□□□□ -0.29
HMGA1-205ENST00000447654 KRTAP1-1Q07627 177 aa13.25□□□□□ -0.29
HMGA1-205ENST00000447654 IL17DQ8TAD2 202 aa13.25□□□□□ -0.29
HMGA1-205ENST00000447654 Q1T7F1 81 aa13.24□□□□□ -0.29
HMGA1-205ENST00000447654 DEFB131AP59861 70 aa13.24□□□□□ -0.29
HMGA1-205ENST00000447654 KHDC1LQ5JSQ8 128 aa13.24□□□□□ -0.29
HMGA1-205ENST00000447654 DNAJC9-AS1A6NH13 148 aa13.23□□□□□ -0.29
HMGA1-205ENST00000447654 CD164Q04900 197 aa13.23□□□□□ -0.29
HMGA1-205ENST00000447654 PRM2P04554 102 aa13.22□□□□□ -0.29
HMGA1-205ENST00000447654 NOTCH2Q04721 2471 aa13.22□□□□□ -0.29
HMGA1-205ENST00000447654 COX17Q14061 63 aa13.22□□□□□ -0.29
HMGA1-205ENST00000447654 JMJD1CQ15652 2540 aa13.22□□□□□ -0.29
HMGA1-205ENST00000447654 RNASE1P07998 156 aaKnown RBP13.21□□□□□ -0.29
HMGA1-205ENST00000447654 Q8IZM0 81 aa13.21□□□□□ -0.29
HMGA1-205ENST00000447654 C4orf3Q8WVX3 66 aa13.21□□□□□ -0.3
HMGA1-205ENST00000447654 M0R2N4 97 aa13.2□□□□□ -0.3
HMGA1-205ENST00000447654 C6orf99Q4VX62 202 aa13.19□□□□□ -0.3
HMGA1-205ENST00000447654 MUC7Q8TAX7 377 aa13.19□□□□□ -0.3
HMGA1-205ENST00000447654 OCR1Q9BZK8 76 aa13.18□□□□□ -0.3
HMGA1-205ENST00000447654 TRGV1A0A0A0MS02 117 aa13.17□□□□□ -0.3
HMGA1-205ENST00000447654 hDV103S1A0JD37 113 aa13.17□□□□□ -0.3
HMGA1-205ENST00000447654 OTOGQ6ZRI0 2925 aa13.16□□□□□ -0.3
HMGA1-205ENST00000447654 SPATA3Q8NHX4 192 aa13.15□□□□□ -0.3
HMGA1-205ENST00000447654 NOTCH3Q9UM47 2321 aa13.14□□□□□ -0.31
HMGA1-205ENST00000447654 DEFB114Q30KQ6 69 aa13.14□□□□□ -0.31
HMGA1-205ENST00000447654 MAP6D1Q9H9H5 199 aa13.12□□□□□ -0.31
HMGA1-205ENST00000447654 LINC00959A0A1B0GUT2 108 aa13.11□□□□□ -0.31
HMGA1-205ENST00000447654 DAD1P61803 113 aa13.11□□□□□ -0.31
HMGA1-205ENST00000447654 IGLV4-60A0A075B6I1 120 aa13.1□□□□□ -0.31
HMGA1-205ENST00000447654 SMR3AQ99954 134 aa13.1□□□□□ -0.31
HMGA1-205ENST00000447654 PRR3P79522 188 aaKnown RBP13.1□□□□□ -0.31
HMGA1-205ENST00000447654 IGKV3OR2-268A0A0C4DH90 116 aa13.09□□□□□ -0.31
HMGA1-205ENST00000447654 HIVEP2P31629 2446 aa13.09□□□□□ -0.31
HMGA1-205ENST00000447654 TRBV6-8A0A0A6YYG3 113 aa13.08□□□□□ -0.31
HMGA1-205ENST00000447654 LINC01006Q8NI28 216 aa13.08□□□□□ -0.31
HMGA1-205ENST00000447654 IGHV4-28A0A0C4DH34 117 aa13.08□□□□□ -0.32
HMGA1-205ENST00000447654 CD164L2Q6UWJ8 174 aa13.08□□□□□ -0.32
HMGA1-205ENST00000447654 VWFP04275 2813 aa13.08□□□□□ -0.32
HMGA1-205ENST00000447654 IGKV4-1P06312 121 aa13.07□□□□□ -0.32
HMGA1-205ENST00000447654 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.07□□□□□ -0.32
HMGA1-205ENST00000447654 ODF3L2Q3SX64 289 aa13.07□□□□□ -0.32
HMGA1-205ENST00000447654 Q6ZRP5 223 aa13.07□□□□□ -0.32
HMGA1-205ENST00000447654 LCE6AA0A183 80 aa13.06□□□□□ -0.32
HMGA1-205ENST00000447654 CCL24O00175 119 aa13.06□□□□□ -0.32
HMGA1-205ENST00000447654 Q6ZQY7 126 aa13.06□□□□□ -0.32
HMGA1-205ENST00000447654 SCXQ7RTU7 201 aa13.06□□□□□ -0.32
HMGA1-205ENST00000447654 COX7BP24311 80 aa13.05□□□□□ -0.32
HMGA1-205ENST00000447654 LYRM9A8MSI8 78 aa13.04□□□□□ -0.32
HMGA1-205ENST00000447654 HIGD2AQ9BW72 106 aa13.03□□□□□ -0.32
HMGA1-205ENST00000447654 IGLV6-57P01721 117 aa13.02□□□□□ -0.33
HMGA1-205ENST00000447654 TEP1Q99973 2627 aaKnown RBP13.02□□□□□ -0.33
HMGA1-205ENST00000447654 FN1P02751 2386 aaKnown RBP13.01□□□□□ -0.33
HMGA1-205ENST00000447654 NSD1Q96L73 2696 aaPredicted RBP13.01□□□□□ -0.33
HMGA1-205ENST00000447654 TENM1Q9UKZ4 2725 aa13.01□□□□□ -0.33
HMGA1-205ENST00000447654 KIAA0087Q14695 138 aa13□□□□□ -0.33
HMGA1-205ENST00000447654 A0A1B0GUV1 79 aa12.99□□□□□ -0.33
HMGA1-205ENST00000447654 C1orf64Q8NEQ6 169 aa12.99□□□□□ -0.33
HMGA1-205ENST00000447654 CYP4F30PQ9H0H9 118 aa12.99□□□□□ -0.33
HMGA1-205ENST00000447654 STHQ8IWL8 128 aa12.98□□□□□ -0.33
HMGA1-205ENST00000447654 C2CD3Q4AC94 2353 aa12.98□□□□□ -0.33
HMGA1-205ENST00000447654 WFDC10AQ9H1F0 79 aa12.97□□□□□ -0.33
HMGA1-205ENST00000447654 HIVEP1P15822 2718 aa12.97□□□□□ -0.33
HMGA1-205ENST00000447654 TRGV2A0A075B6R0 118 aa12.96□□□□□ -0.33
HMGA1-205ENST00000447654 TRAV22A0A0B4J277 110 aa12.96□□□□□ -0.33
HMGA1-205ENST00000447654 MRPL55Q7Z7F7 128 aaKnown RBP12.96□□□□□ -0.33
HMGA1-205ENST00000447654 RETNQ9HD89 108 aa12.96□□□□□ -0.34
HMGA1-205ENST00000447654 LOC100131303A0A0U1RQF7 123 aa12.95□□□□□ -0.34
HMGA1-205ENST00000447654 TRRAPQ9Y4A5 3859 aa12.94□□□□□ -0.34
HMGA1-205ENST00000447654 KRTAP10-3P60369 221 aa12.94□□□□□ -0.34
HMGA1-205ENST00000447654 ZCCHC13Q8WW36 166 aaKnown RBP12.94□□□□□ -0.34
HMGA1-205ENST00000447654 DIRC1Q969H9 104 aa12.94□□□□□ -0.34
HMGA1-205ENST00000447654 NOP10Q9NPE3 64 aaKnown RBP12.94□□□□□ -0.34
HMGA1-205ENST00000447654 UBE2BP63146 152 aa12.93□□□□□ -0.34
HMGA1-205ENST00000447654 Q8NDZ9 215 aa12.93□□□□□ -0.34
HMGA1-205ENST00000447654 C16orf74Q96GX8 76 aa12.93□□□□□ -0.34
HMGA1-205ENST00000447654 TRGV4A0A0C4DH28 118 aa12.93□□□□□ -0.34
HMGA1-205ENST00000447654 CELA1Q9UNI1 258 aa12.93□□□□□ -0.34
HMGA1-205ENST00000447654 GIG44P09565 113 aaPredicted RBP12.92□□□□□ -0.34
HMGA1-205ENST00000447654 A0A1B0GW54 56 aa12.91□□□□□ -0.34
HMGA1-205ENST00000447654 KRTAP21-3Q3LHN1 58 aa12.91□□□□□ -0.34
HMGA1-205ENST00000447654 NBEAL2Q6ZNJ1 2754 aa12.91□□□□□ -0.34
HMGA1-205ENST00000447654 KTN1-AS1Q86SY8 53 aa12.9□□□□□ -0.34
HMGA1-205ENST00000447654 IGHV4-30-4P0DP06 118 aa12.89□□□□□ -0.35
HMGA1-205ENST00000447654 C19orf73Q9NVV2 129 aa12.89□□□□□ -0.35
HMGA1-205ENST00000447654 Q8N9L7 120 aa12.88□□□□□ -0.35
HMGA1-205ENST00000447654 PSPHP1O15172 72 aa12.88□□□□□ -0.35
HMGA1-205ENST00000447654 IGLV1-51P01701 117 aa12.88□□□□□ -0.35
HMGA1-205ENST00000447654 ELOF1P60002 83 aaKnown RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 110.4 ms