RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 TMEM238C9JI98 176 aa4.27□□□□□ -1.73
LIMCH1-204ENST00000446625 HIST1H2BKO60814 126 aa4.27□□□□□ -1.73
LIMCH1-204ENST00000446625 HIST1H2BJP06899 126 aa4.27□□□□□ -1.73
LIMCH1-204ENST00000446625 HIST1H2BOP23527 126 aa4.27□□□□□ -1.73
LIMCH1-204ENST00000446625 HIST1H2BBP33778 126 aa4.27□□□□□ -1.73
LIMCH1-204ENST00000446625 HIST1H2BDP58876 126 aa4.27□□□□□ -1.73
LIMCH1-204ENST00000446625 RAB5BP61020 215 aa4.27□□□□□ -1.73
LIMCH1-204ENST00000446625 HIST1H2BCP62807 126 aa4.27□□□□□ -1.73
LIMCH1-204ENST00000446625 HIST2H2BEQ16778 126 aa4.27□□□□□ -1.73
LIMCH1-204ENST00000446625 KIAA1644Q3SXP7 199 aa4.27□□□□□ -1.73
LIMCH1-204ENST00000446625 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.27□□□□□ -1.73
LIMCH1-204ENST00000446625 HIST1H2BHQ93079 126 aa4.27□□□□□ -1.73
LIMCH1-204ENST00000446625 PRELID3AQ96N28 172 aa4.27□□□□□ -1.73
LIMCH1-204ENST00000446625 HIST1H2BNQ99877 126 aa4.27□□□□□ -1.73
LIMCH1-204ENST00000446625 HIST1H2BMQ99879 126 aa4.27□□□□□ -1.73
LIMCH1-204ENST00000446625 PYGO1Q9Y3Y4 419 aa4.27□□□□□ -1.73
LIMCH1-204ENST00000446625 IGLV8-61A0A075B6I0 122 aa4.26□□□□□ -1.73
LIMCH1-204ENST00000446625 SPINK1P00995 79 aa4.26□□□□□ -1.73
LIMCH1-204ENST00000446625 PCOTHQ58A44 107 aa4.26□□□□□ -1.73
LIMCH1-204ENST00000446625 TEX43Q6ZNM6 134 aa4.26□□□□□ -1.73
LIMCH1-204ENST00000446625 ORMDL3Q8N138 153 aa4.26□□□□□ -1.73
LIMCH1-204ENST00000446625 SPRR4Q96PI1 79 aa4.26□□□□□ -1.73
LIMCH1-204ENST00000446625 TMEM126AQ9H061 195 aa4.26□□□□□ -1.73
LIMCH1-204ENST00000446625 NDUFA12Q9UI09 145 aa4.26□□□□□ -1.73
LIMCH1-204ENST00000446625 C2orf88Q9BSF0 95 aa4.25□□□□□ -1.73
LIMCH1-204ENST00000446625 HIGD2AQ9BW72 106 aa4.25□□□□□ -1.73
LIMCH1-204ENST00000446625 M0R378 163 aa4.24□□□□□ -1.73
LIMCH1-204ENST00000446625 LINC00310P59036 64 aa4.24□□□□□ -1.73
LIMCH1-204ENST00000446625 COA6Q5JTJ3 125 aaKnown RBP4.24□□□□□ -1.73
LIMCH1-204ENST00000446625 C2orf66Q6UXQ4 117 aa4.24□□□□□ -1.73
LIMCH1-204ENST00000446625 Q8N377 158 aa4.24□□□□□ -1.73
LIMCH1-204ENST00000446625 C18orf32Q8TCD1 76 aa4.24□□□□□ -1.73
LIMCH1-204ENST00000446625 AMELXQ99217 191 aa4.24□□□□□ -1.73
LIMCH1-204ENST00000446625 MAP1LC3AQ9H492 121 aa4.24□□□□□ -1.73
LIMCH1-204ENST00000446625 CDKN2A-AS1Q9UH64 79 aa4.24□□□□□ -1.73
LIMCH1-204ENST00000446625 C5orf52A6NGY3 159 aa4.23□□□□□ -1.73
LIMCH1-204ENST00000446625 PPBPP02775 128 aa4.23□□□□□ -1.73
LIMCH1-204ENST00000446625 CXCL5P42830 114 aa4.23□□□□□ -1.73
LIMCH1-204ENST00000446625 NDUFA6P56556 154 aa4.23□□□□□ -1.73
LIMCH1-204ENST00000446625 FAM19A3Q7Z5A8 133 aa4.23□□□□□ -1.73
LIMCH1-204ENST00000446625 VCX2Q9H322 139 aa4.23□□□□□ -1.73
LIMCH1-204ENST00000446625 CYSLTR1Q9Y271 337 aa4.23□□□□□ -1.73
LIMCH1-204ENST00000446625 SNRPEP62304 92 aaKnown RBP4.22□□□□□ -1.73
LIMCH1-204ENST00000446625 FAM19A2Q8N3H0 131 aa4.22□□□□□ -1.73
LIMCH1-204ENST00000446625 Q8N8P6 123 aa4.22□□□□□ -1.73
LIMCH1-204ENST00000446625 URB1-AS1Q96HZ7 61 aa4.22□□□□□ -1.73
LIMCH1-204ENST00000446625 LAMTOR2Q9Y2Q5 125 aa4.22□□□□□ -1.73
LIMCH1-204ENST00000446625 LOC105371267A0A1B0GV96 52 aa4.21□□□□□ -1.74
LIMCH1-204ENST00000446625 PRSS47A8MTI9 375 aa4.21□□□□□ -1.74
LIMCH1-204ENST00000446625 SLC25A20O43772 301 aa4.21□□□□□ -1.74
LIMCH1-204ENST00000446625 SERF1AO75920 110 aa4.21□□□□□ -1.74
LIMCH1-204ENST00000446625 S100A6P06703 90 aa4.21□□□□□ -1.74
LIMCH1-204ENST00000446625 VPREB1P12018 145 aa4.21□□□□□ -1.74
LIMCH1-204ENST00000446625 HERVK_113P63121 156 aa4.21□□□□□ -1.74
LIMCH1-204ENST00000446625 BAGE3Q86Y29 109 aa4.21□□□□□ -1.74
LIMCH1-204ENST00000446625 HIST3H2BBQ8N257 126 aa4.21□□□□□ -1.74
LIMCH1-204ENST00000446625 COX7B2Q8TF08 81 aa4.21□□□□□ -1.74
LIMCH1-204ENST00000446625 GEMIN7Q9H840 131 aaKnown RBP4.21□□□□□ -1.74
LIMCH1-204ENST00000446625 LINC01546A6NGU7 62 aa4.2□□□□□ -1.74
LIMCH1-204ENST00000446625 IGIPA6NJ69 53 aa4.2□□□□□ -1.74
LIMCH1-204ENST00000446625 SMIM1B2RUZ4 78 aa4.2□□□□□ -1.74
LIMCH1-204ENST00000446625 SPINK8P0C7L1 97 aa4.2□□□□□ -1.74
LIMCH1-204ENST00000446625 RPS29P62273 56 aaKnown RBP4.2□□□□□ -1.74
LIMCH1-204ENST00000446625 COX6B2Q6YFQ2 88 aa4.2□□□□□ -1.74
LIMCH1-204ENST00000446625 ZNF706Q9Y5V0 76 aaPredicted RBP4.2□□□□□ -1.74
LIMCH1-204ENST00000446625 KRTAP4-16G5E9R7 235 aaPredicted RBP4.19□□□□□ -1.74
LIMCH1-204ENST00000446625 LINC00614P0C842 121 aa4.19□□□□□ -1.74
LIMCH1-204ENST00000446625 SEC11AP67812 179 aa4.19□□□□□ -1.74
LIMCH1-204ENST00000446625 ORMDL2Q53FV1 153 aa4.19□□□□□ -1.74
LIMCH1-204ENST00000446625 PDZD11Q5EBL8 140 aa4.19□□□□□ -1.74
LIMCH1-204ENST00000446625 Q8NDZ9 215 aa4.19□□□□□ -1.74
LIMCH1-204ENST00000446625 CHCHD1Q96BP2 118 aaKnown RBP4.19□□□□□ -1.74
LIMCH1-204ENST00000446625 MACF1Q9UPN3 7388 aaKnown RBP4.18□□□□□ -1.74
LIMCH1-204ENST00000446625 A0A096LNJ9 63 aa4.18□□□□□ -1.74
LIMCH1-204ENST00000446625 PFN2P35080 140 aa4.18□□□□□ -1.74
LIMCH1-204ENST00000446625 MOBPQ13875 183 aa4.18□□□□□ -1.74
LIMCH1-204ENST00000446625 HIST1H2BLQ99880 126 aa4.18□□□□□ -1.74
LIMCH1-204ENST00000446625 KRTAP9-9Q9BYP9 154 aa4.18□□□□□ -1.74
LIMCH1-204ENST00000446625 KRTAP9-4Q9BYQ2 154 aa4.18□□□□□ -1.74
LIMCH1-204ENST00000446625 SND1-IT1Q9HBX3 110 aa4.18□□□□□ -1.74
LIMCH1-204ENST00000446625 NXT2Q9NPJ8 142 aaKnown RBP4.18□□□□□ -1.74
LIMCH1-204ENST00000446625 HSBP1O75506 76 aa4.17□□□□□ -1.74
LIMCH1-204ENST00000446625 NPSP0C0P6 89 aa4.17□□□□□ -1.74
LIMCH1-204ENST00000446625 RPL24P83731 157 aaKnown RBP4.17□□□□□ -1.74
LIMCH1-204ENST00000446625 PMCHL1Q16048 86 aa4.17□□□□□ -1.74
LIMCH1-204ENST00000446625 LINC00483Q53H64 154 aa4.17□□□□□ -1.74
LIMCH1-204ENST00000446625 FA2HQ7L5A8 372 aa4.17□□□□□ -1.74
LIMCH1-204ENST00000446625 SMCR5Q8TEV8 140 aa4.17□□□□□ -1.74
LIMCH1-204ENST00000446625 SCGB3A1Q96QR1 104 aa4.17□□□□□ -1.74
LIMCH1-204ENST00000446625 IGLV9-49A0A0B4J1Y8 123 aa4.16□□□□□ -1.74
LIMCH1-204ENST00000446625 C9orf92A6NGG3 77 aa4.16□□□□□ -1.74
LIMCH1-204ENST00000446625 K7EMI3 77 aa4.16□□□□□ -1.74
LIMCH1-204ENST00000446625 FABP4P15090 132 aa4.16□□□□□ -1.74
LIMCH1-204ENST00000446625 S100A2P29034 98 aa4.16□□□□□ -1.74
LIMCH1-204ENST00000446625 GAGE2AQ6NT46 116 aa4.16□□□□□ -1.74
LIMCH1-204ENST00000446625 SSBP3-AS1Q7Z2R9 100 aa4.16□□□□□ -1.74
LIMCH1-204ENST00000446625 TOMM6Q96B49 74 aa4.16□□□□□ -1.74
LIMCH1-204ENST00000446625 TIMM17AQ99595 171 aa4.16□□□□□ -1.74
LIMCH1-204ENST00000446625 IGLV5-45A0A087WSX0 123 aa4.15□□□□□ -1.75
LIMCH1-204ENST00000446625 ATP5LO75964 103 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms