RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 KIR2DL5BQ8NHK3 375 aa8.21□□□□□ -1.09
MSH6-204ENST00000445503 Q6JHZ5 121 aa8.21□□□□□ -1.09
MSH6-204ENST00000445503 FAM19A1Q7Z5A9 133 aa8.21□□□□□ -1.09
MSH6-204ENST00000445503 CSNK1G2-AS1Q8NCQ2 148 aa8.21□□□□□ -1.09
MSH6-204ENST00000445503 UPK3BQ9BT76 320 aa8.21□□□□□ -1.09
MSH6-204ENST00000445503 CCKP06307 115 aa8.21□□□□□ -1.1
MSH6-204ENST00000445503 HELZ2Q9BYK8 2649 aaKnown RBP8.21□□□□□ -1.1
MSH6-204ENST00000445503 LYRM9A8MSI8 78 aa8.2□□□□□ -1.1
MSH6-204ENST00000445503 SERP2Q8N6R1 65 aa8.2□□□□□ -1.1
MSH6-204ENST00000445503 C19orf73Q9NVV2 129 aa8.2□□□□□ -1.1
MSH6-204ENST00000445503 LINC01600Q96MT4 127 aa8.2□□□□□ -1.1
MSH6-204ENST00000445503 VPS13CQ709C8 3753 aa8.19□□□□□ -1.1
MSH6-204ENST00000445503 A0A1B0GUV1 79 aa8.19□□□□□ -1.1
MSH6-204ENST00000445503 J3QKU1 62 aa8.19□□□□□ -1.1
MSH6-204ENST00000445503 C10orf25Q5T742 122 aa8.19□□□□□ -1.1
MSH6-204ENST00000445503 DIRC1Q969H9 104 aa8.19□□□□□ -1.1
MSH6-204ENST00000445503 F8P00451 2351 aa8.19□□□□□ -1.1
MSH6-204ENST00000445503 NIPBLQ6KC79 2804 aaeCLIP8.19□□□□□ -1.12e-6■■□□□ 12.2
MSH6-204ENST00000445503 IGKV2D-24A0A075B6R9 120 aa8.18□□□□□ -1.1
MSH6-204ENST00000445503 INAFM1C9JVW0 142 aa8.18□□□□□ -1.1
MSH6-204ENST00000445503 X6R8D5 127 aa8.17□□□□□ -1.1
MSH6-204ENST00000445503 APCP25054 2843 aa8.17□□□□□ -1.1
MSH6-204ENST00000445503 KRTAP1-3Q8IUG1 177 aa8.17□□□□□ -1.1
MSH6-204ENST00000445503 C16orf95Q9H693 158 aa8.17□□□□□ -1.1
MSH6-204ENST00000445503 CELA1Q9UNI1 258 aa8.17□□□□□ -1.1
MSH6-204ENST00000445503 F8WDY8 70 aa8.16□□□□□ -1.1
MSH6-204ENST00000445503 ITPR2Q14571 2701 aa8.16□□□□□ -1.1
MSH6-204ENST00000445503 C4orf26Q17RF5 130 aa8.16□□□□□ -1.1
MSH6-204ENST00000445503 TRBV10-3A0A0K0K1G6 114 aa8.15□□□□□ -1.1
MSH6-204ENST00000445503 UBR5O95071 2799 aaPredicted RBP8.15□□□□□ -1.1
MSH6-204ENST00000445503 COX7BP24311 80 aa8.15□□□□□ -1.1
MSH6-204ENST00000445503 PRO0628Q9UI54 55 aa8.15□□□□□ -1.1
MSH6-204ENST00000445503 COX17Q14061 63 aa8.15□□□□□ -1.11
MSH6-204ENST00000445503 LY6G6DO95868 133 aa8.14□□□□□ -1.11
MSH6-204ENST00000445503 NKAPP1Q8N9T2 125 aa8.14□□□□□ -1.11
MSH6-204ENST00000445503 C22orf24Q9Y442 160 aa8.14□□□□□ -1.11
MSH6-204ENST00000445503 UNC79Q9P2D8 2635 aa8.13□□□□□ -1.11
MSH6-204ENST00000445503 LELP1Q5T871 98 aa8.13□□□□□ -1.11
MSH6-204ENST00000445503 LINC00575Q6W349 94 aa8.13□□□□□ -1.11
MSH6-204ENST00000445503 SNURFQ9Y675 71 aa8.12□□□□□ -1.11
MSH6-204ENST00000445503 LINC01561Q8N1V8 128 aa8.11□□□□□ -1.11
MSH6-204ENST00000445503 MIFP14174 115 aa8.11□□□□□ -1.11
MSH6-204ENST00000445503 SPATA3Q8NHX4 192 aa8.11□□□□□ -1.11
MSH6-204ENST00000445503 IGHV4-30-4P0DP06 118 aa8.1□□□□□ -1.11
MSH6-204ENST00000445503 ZNF73O43830 326 aaPredicted RBP8.1□□□□□ -1.11
MSH6-204ENST00000445503 KIAA0087Q14695 138 aa8.1□□□□□ -1.11
MSH6-204ENST00000445503 ATP5EP2Q5VTU8 51 aa8.1□□□□□ -1.11
MSH6-204ENST00000445503 KRTAP10-3P60369 221 aa8.09□□□□□ -1.11
MSH6-204ENST00000445503 KPRPQ5T749 579 aaPredicted RBP8.08□□□□□ -1.12
MSH6-204ENST00000445503 WFDC10BQ8IUB3 73 aa8.08□□□□□ -1.12
MSH6-204ENST00000445503 CRYGAP11844 174 aa8.08□□□□□ -1.12
MSH6-204ENST00000445503 PMAIP1Q13794 54 aa8.08□□□□□ -1.12
MSH6-204ENST00000445503 NREPQ16612 68 aa8.08□□□□□ -1.12
MSH6-204ENST00000445503 C3orf84H3BNL1 204 aa8.07□□□□□ -1.12
MSH6-204ENST00000445503 NANOS2P60321 138 aaKnown RBP8.07□□□□□ -1.12
MSH6-204ENST00000445503 Q6ZVQ6 151 aa8.07□□□□□ -1.12
MSH6-204ENST00000445503 VPREB1P12018 145 aa8.06□□□□□ -1.12
MSH6-204ENST00000445503 C6orf48Q9UBA6 75 aa8.06□□□□□ -1.12
MSH6-204ENST00000445503 TEP1Q99973 2627 aaKnown RBP8.06□□□□□ -1.12
MSH6-204ENST00000445503 LINC01547P58512 204 aaPredicted RBP8.05□□□□□ -1.12
MSH6-204ENST00000445503 LYPD5Q6UWN5 251 aa8.05□□□□□ -1.12
MSH6-204ENST00000445503 PDE6GP18545 87 aa8.05□□□□□ -1.12
MSH6-204ENST00000445503 KRTAP1-1Q07627 177 aa8.04□□□□□ -1.12
MSH6-204ENST00000445503 M0R2N4 97 aa8.04□□□□□ -1.12
MSH6-204ENST00000445503 Q8NDZ9 215 aa8.04□□□□□ -1.12
MSH6-204ENST00000445503 C4orf48Q5BLP8 95 aa8.03□□□□□ -1.12
MSH6-204ENST00000445503 Q6ZTC4 211 aa8.03□□□□□ -1.12
MSH6-204ENST00000445503 Q8N9L7 120 aa8.03□□□□□ -1.12
MSH6-204ENST00000445503 C2orf48Q96LS8 159 aa8.03□□□□□ -1.12
MSH6-204ENST00000445503 Q6ZRU5 148 aa8.03□□□□□ -1.12
MSH6-204ENST00000445503 MUC7Q8TAX7 377 aa8.03□□□□□ -1.12
MSH6-204ENST00000445503 CYSTM1Q9H1C7 97 aa8.03□□□□□ -1.12
MSH6-204ENST00000445503 RPL37AP8A6NKH3 93 aa8.03□□□□□ -1.12
MSH6-204ENST00000445503 Q6ZQT0 140 aa8.03□□□□□ -1.12
MSH6-204ENST00000445503 NDUFC2-KCTD14E9PQ53 114 aa8.02□□□□□ -1.13
MSH6-204ENST00000445503 ETDCA0A1B0GVM5 59 aa8.02□□□□□ -1.13
MSH6-204ENST00000445503 M0R378 163 aa8.02□□□□□ -1.13
MSH6-204ENST00000445503 LINC00612Q8N6U2 182 aa8.02□□□□□ -1.13
MSH6-204ENST00000445503 UBE2BP63146 152 aa8.01□□□□□ -1.13
MSH6-204ENST00000445503 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.01□□□□□ -1.13
MSH6-204ENST00000445503 SYCNQ0VAF6 134 aa8.01□□□□□ -1.13
MSH6-204ENST00000445503 Q8NAQ8 132 aa8.01□□□□□ -1.13
MSH6-204ENST00000445503 OBSCN-AS1Q96MR7 158 aa8.01□□□□□ -1.13
MSH6-204ENST00000445503 DEFB131BA0A096LNP1 70 aa8.01□□□□□ -1.13
MSH6-204ENST00000445503 TRAV10A0A0B4J240 114 aa8□□□□□ -1.13
MSH6-204ENST00000445503 BPY2O14599 106 aa8□□□□□ -1.13
MSH6-204ENST00000445503 RMI2Q96E14 147 aa8□□□□□ -1.13
MSH6-204ENST00000445503 DPH3Q96FX2 82 aa8□□□□□ -1.13
MSH6-204ENST00000445503 MAST4O15021 2626 aa8□□□□□ -1.13
MSH6-204ENST00000445503 F8WEM9 126 aa7.99□□□□□ -1.13
MSH6-204ENST00000445503 H3BQ85 93 aa7.99□□□□□ -1.13
MSH6-204ENST00000445503 FUSP35637 526 aaKnown RBP eCLIP7.99□□□□□ -1.13
MSH6-204ENST00000445503 TRAV7A0A075B6U4 112 aa7.98□□□□□ -1.13
MSH6-204ENST00000445503 A0A0J9YWU9 116 aa7.98□□□□□ -1.13
MSH6-204ENST00000445503 C11orf45Q8TAV5 145 aa7.98□□□□□ -1.13
MSH6-204ENST00000445503 EGFEM1PQ0D2K5 195 aa7.98□□□□□ -1.13
MSH6-204ENST00000445503 NOTCH1P46531 2555 aa7.98□□□□□ -1.13
MSH6-204ENST00000445503 IGLV6-57P01721 117 aa7.97□□□□□ -1.13
MSH6-204ENST00000445503 SMIM26A0A096LP01 95 aa7.96□□□□□ -1.13
MSH6-204ENST00000445503 SERTAD4-AS1Q5TG53 156 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms