RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 A0A1W2PPR1 153 aa8.55□□□□□ -1.04
CCDC88A-207ENST00000436346 Q6ZSN1 163 aa8.55□□□□□ -1.04
CCDC88A-207ENST00000436346 KMT2BQ9UMN6 2715 aaPredicted RBP8.55□□□□□ -1.04
CCDC88A-207ENST00000436346 XGP55808 180 aa8.54□□□□□ -1.04
CCDC88A-207ENST00000436346 ADAMTSL4-AS1Q5T5F5 129 aa8.54□□□□□ -1.04
CCDC88A-207ENST00000436346 DMBT1Q9UGM3 2413 aaPredicted RBP8.54□□□□□ -1.04
CCDC88A-207ENST00000436346 LINC00575Q6W349 94 aa8.54□□□□□ -1.04
CCDC88A-207ENST00000436346 LINC00208Q96KT6 92 aa8.54□□□□□ -1.04
CCDC88A-207ENST00000436346 CCDC179H3BU77 68 aa8.53□□□□□ -1.04
CCDC88A-207ENST00000436346 CSDC2Q9Y534 153 aaKnown RBP8.53□□□□□ -1.04
CCDC88A-207ENST00000436346 TSPEAR-AS2P59090 65 aa8.52□□□□□ -1.04
CCDC88A-207ENST00000436346 BAHCC1Q9P281 2608 aa8.52□□□□□ -1.05
CCDC88A-207ENST00000436346 IGKV2D-30A0A075B6S6 120 aa8.52□□□□□ -1.05
CCDC88A-207ENST00000436346 IGKV2-30P06310 120 aa8.52□□□□□ -1.05
CCDC88A-207ENST00000436346 H0Y9P7 68 aa8.52□□□□□ -1.05
CCDC88A-207ENST00000436346 Q6Q795 121 aa8.52□□□□□ -1.05
CCDC88A-207ENST00000436346 A0A087WSZ3 146 aa8.51□□□□□ -1.05
CCDC88A-207ENST00000436346 COX7CP15954 63 aa8.51□□□□□ -1.05
CCDC88A-207ENST00000436346 BEAN1Q3B7T3 259 aa8.51□□□□□ -1.05
CCDC88A-207ENST00000436346 PCOTHQ58A44 107 aa8.51□□□□□ -1.05
CCDC88A-207ENST00000436346 XIRP2A4UGR9 3374 aa8.5□□□□□ -1.05
CCDC88A-207ENST00000436346 AMELXQ99217 191 aa8.5□□□□□ -1.05
CCDC88A-207ENST00000436346 C7orf65Q6ZTY9 151 aa8.5□□□□□ -1.05
CCDC88A-207ENST00000436346 TRAV7A0A075B6U4 112 aa8.49□□□□□ -1.05
CCDC88A-207ENST00000436346 HCG22E2RYF7 251 aa8.49□□□□□ -1.05
CCDC88A-207ENST00000436346 ZNF292O60281 2723 aa8.49□□□□□ -1.05
CCDC88A-207ENST00000436346 SPACA4Q8TDM5 124 aa8.49□□□□□ -1.05
CCDC88A-207ENST00000436346 ZNF580Q9UK33 172 aa8.49□□□□□ -1.05
CCDC88A-207ENST00000436346 MOBPQ13875 183 aa8.49□□□□□ -1.05
CCDC88A-207ENST00000436346 CRYGAP11844 174 aa8.48□□□□□ -1.05
CCDC88A-207ENST00000436346 Q6ZRU5 148 aa8.47□□□□□ -1.05
CCDC88A-207ENST00000436346 CHTF8P0CG12 524 aa8.46□□□□□ -1.06
CCDC88A-207ENST00000436346 Q8N2B8 174 aa8.46□□□□□ -1.06
CCDC88A-207ENST00000436346 PSPHP1O15172 72 aa8.45□□□□□ -1.06
CCDC88A-207ENST00000436346 Q8N3U1 123 aa8.45□□□□□ -1.06
CCDC88A-207ENST00000436346 TRANK1O15050 2925 aa8.45□□□□□ -1.06
CCDC88A-207ENST00000436346 FAM229AH3BQW9 127 aa8.44□□□□□ -1.06
CCDC88A-207ENST00000436346 hDV103S1A0JD37 113 aa8.43□□□□□ -1.06
CCDC88A-207ENST00000436346 C16orf90A8MZG2 172 aa8.43□□□□□ -1.06
CCDC88A-207ENST00000436346 A0A087WVE0 104 aa8.42□□□□□ -1.06
CCDC88A-207ENST00000436346 PMAIP1Q13794 54 aa8.42□□□□□ -1.06
CCDC88A-207ENST00000436346 SOSTDC1Q6X4U4 206 aa8.42□□□□□ -1.06
CCDC88A-207ENST00000436346 C22orf24Q9Y442 160 aa8.42□□□□□ -1.06
CCDC88A-207ENST00000436346 DSPP15924 2871 aaKnown RBP8.41□□□□□ -1.06
CCDC88A-207ENST00000436346 LINC01561Q8N1V8 128 aa8.41□□□□□ -1.06
CCDC88A-207ENST00000436346 STAB2Q8WWQ8 2551 aa8.4□□□□□ -1.06
CCDC88A-207ENST00000436346 C11orf72Q8NBR9 251 aa8.4□□□□□ -1.06
CCDC88A-207ENST00000436346 MGAQ8IWI9 3026 aa8.4□□□□□ -1.06
CCDC88A-207ENST00000436346 C1orf64Q8NEQ6 169 aa8.39□□□□□ -1.07
CCDC88A-207ENST00000436346 RTL8CO15255 209 aa8.39□□□□□ -1.07
CCDC88A-207ENST00000436346 TRBV7-7A0A0K0K1E9 115 aa8.38□□□□□ -1.07
CCDC88A-207ENST00000436346 CXCL6P80162 114 aa8.38□□□□□ -1.07
CCDC88A-207ENST00000436346 SMCR5Q8TEV8 140 aa8.37□□□□□ -1.07
CCDC88A-207ENST00000436346 LINC00310P59036 64 aa8.37□□□□□ -1.07
CCDC88A-207ENST00000436346 COX8CQ7Z4L0 72 aa8.36□□□□□ -1.07
CCDC88A-207ENST00000436346 KIAA0087Q14695 138 aa8.36□□□□□ -1.07
CCDC88A-207ENST00000436346 Q9UF83 564 aa8.36□□□□□ -1.07
CCDC88A-207ENST00000436346 SMIM26A0A096LP01 95 aa8.35□□□□□ -1.07
CCDC88A-207ENST00000436346 C6orf48Q9UBA6 75 aa8.35□□□□□ -1.07
CCDC88A-207ENST00000436346 LINC00315P59091 139 aa8.35□□□□□ -1.07
CCDC88A-207ENST00000436346 CHD7Q9P2D1 2997 aa8.35□□□□□ -1.07
CCDC88A-207ENST00000436346 C1orf195Q5TG92 126 aa8.35□□□□□ -1.07
CCDC88A-207ENST00000436346 TYMSOSQ8TAI1 123 aa8.35□□□□□ -1.07
CCDC88A-207ENST00000436346 J3QL48 77 aa8.34□□□□□ -1.07
CCDC88A-207ENST00000436346 C10orf142B7Z368 130 aa8.34□□□□□ -1.07
CCDC88A-207ENST00000436346 URB1-AS1Q96HZ7 61 aa8.34□□□□□ -1.07
CCDC88A-207ENST00000436346 APCP25054 2843 aa8.33□□□□□ -1.08
CCDC88A-207ENST00000436346 TMEM254Q8TBM7 123 aa8.33□□□□□ -1.08
CCDC88A-207ENST00000436346 PLA2G1BP04054 148 aaKnown RBP8.33□□□□□ -1.08
CCDC88A-207ENST00000436346 MKI67P46013 3256 aaKnown RBP8.33□□□□□ -1.08
CCDC88A-207ENST00000436346 FRYLO94915 3013 aa8.32□□□□□ -1.08
CCDC88A-207ENST00000436346 NBDYA0A0U1RRE5 68 aa8.32□□□□□ -1.08
CCDC88A-207ENST00000436346 VPS13AQ96RL7 3174 aa8.32□□□□□ -1.08
CCDC88A-207ENST00000436346 Q6ZRP5 223 aa8.32□□□□□ -1.08
CCDC88A-207ENST00000436346 LINC00167Q96N53 147 aa8.32□□□□□ -1.08
CCDC88A-207ENST00000436346 EPM2AB3EWF7 344 aa8.32□□□□□ -1.08
CCDC88A-207ENST00000436346 SMIM29Q86T20 159 aa8.32□□□□□ -1.08
CCDC88A-207ENST00000436346 TP53AIP1Q9HCN2 124 aa8.31□□□□□ -1.08
CCDC88A-207ENST00000436346 PHF5AQ7RTV0 110 aaKnown RBP8.31□□□□□ -1.08
CCDC88A-207ENST00000436346 KRTAP24-1Q3LI83 254 aa8.3□□□□□ -1.08
CCDC88A-207ENST00000436346 LINC00313P59037 77 aa8.3□□□□□ -1.08
CCDC88A-207ENST00000436346 KIF25-AS1Q9Y6Z4 181 aa8.29□□□□□ -1.08
CCDC88A-207ENST00000436346 IGLV5-39A0A0G2JS06 123 aa8.29□□□□□ -1.08
CCDC88A-207ENST00000436346 UTP20O75691 2785 aaKnown RBP8.29□□□□□ -1.08
CCDC88A-207ENST00000436346 TRIOO75962 3097 aa8.29□□□□□ -1.08
CCDC88A-207ENST00000436346 LINC00846Q9NV44 126 aa8.29□□□□□ -1.08
CCDC88A-207ENST00000436346 Q6ZRX8 168 aa8.29□□□□□ -1.08
CCDC88A-207ENST00000436346 A0A096LNJ9 63 aa8.28□□□□□ -1.08
CCDC88A-207ENST00000436346 RPL37AP61513 92 aaKnown RBP8.28□□□□□ -1.08
CCDC88A-207ENST00000436346 Q8NBF4 154 aa8.28□□□□□ -1.08
CCDC88A-207ENST00000436346 LINC01546A6NGU7 62 aa8.28□□□□□ -1.08
CCDC88A-207ENST00000436346 IGHV3OR16-9A0A0B4J2B5 98 aa8.27□□□□□ -1.08
CCDC88A-207ENST00000436346 LINC00588Q9Y4M8 146 aa8.27□□□□□ -1.08
CCDC88A-207ENST00000436346 H3BNG1 76 aa8.27□□□□□ -1.09
CCDC88A-207ENST00000436346 A0A1B0GU69 56 aa8.27□□□□□ -1.09
CCDC88A-207ENST00000436346 ACYP2P14621 99 aa8.27□□□□□ -1.09
CCDC88A-207ENST00000436346 PRUNE2Q8WUY3 3088 aa8.26□□□□□ -1.09
CCDC88A-207ENST00000436346 ATP11AUNQ6ZP68 121 aa8.26□□□□□ -1.09
CCDC88A-207ENST00000436346 SPATA3Q8NHX4 192 aa8.26□□□□□ -1.09
CCDC88A-207ENST00000436346 FAM168BA1KXE4 195 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 126.4 ms